Wall clock time and date at job start Tue Mar 31 2020 11:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35642 * 116.99583 * 2 1 4 4 C 1.46388 * 126.59381 * 270.24609 * 3 2 1 5 5 C 1.39844 * 133.59248 * 359.33444 * 4 3 2 6 6 C 1.36539 * 119.79387 * 180.41531 * 5 4 3 7 7 C 1.38894 * 120.53238 * 0.26207 * 6 5 4 8 8 C 1.37674 * 120.69768 * 359.97438 * 7 6 5 9 9 C 1.39293 * 119.82514 * 0.02562 * 8 7 6 10 10 N 1.37496 * 133.00319 * 179.97438 * 9 8 7 11 11 H 0.97000 * 125.11498 * 0.07790 * 10 9 8 12 12 C 1.36685 * 126.59539 * 90.03159 * 3 2 1 13 13 C 1.46309 * 125.41538 * 359.95909 * 12 3 2 14 14 O 1.21741 * 120.00305 * 359.97438 * 13 12 3 15 15 N 1.34777 * 119.99913 * 179.97438 * 13 12 3 16 16 C 1.46499 * 120.00108 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47116 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46998 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47041 * 179.97438 * 18 17 16 20 20 C 1.36936 * 119.99734 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00187 * 0.02562 * 20 19 18 22 22 C 1.38818 * 120.00010 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99900 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00301 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46942 * 89.99604 * 24 22 20 26 26 H 1.48498 * 109.46903 * 209.99899 * 24 22 20 27 27 H 1.48501 * 109.46730 * 329.99639 * 24 22 20 28 28 H 1.08992 * 109.47390 * 59.99995 * 1 2 3 29 29 H 1.09004 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46937 * 299.99369 * 1 2 3 31 31 H 1.08002 * 120.10671 * 0.70209 * 5 4 3 32 32 H 1.07996 * 119.72764 * 180.23484 * 6 5 4 33 33 H 1.08001 * 119.65102 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.09133 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99880 * 359.97438 * 15 13 12 36 36 H 1.09000 * 109.46785 * 300.00154 * 16 15 13 37 37 H 1.09000 * 109.46950 * 59.99246 * 16 15 13 38 38 H 1.08996 * 109.47113 * 299.99701 * 17 16 15 39 39 H 1.08996 * 109.47244 * 60.00015 * 17 16 15 40 40 H 1.08996 * 109.47128 * 299.99917 * 18 17 16 41 41 H 1.08999 * 109.47421 * 60.00031 * 18 17 16 42 42 H 0.96995 * 120.00064 * 0.02562 * 19 18 17 43 43 H 0.97000 * 120.00265 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 2.4364 1.9885 -1.1753 5 6 2.3334 1.7735 -2.5533 6 6 2.8119 2.7104 -3.4237 7 6 3.4055 3.8740 -2.9518 8 6 3.5223 4.1050 -1.5996 9 6 3.0417 3.1639 -0.6920 10 7 3.0157 3.1141 0.6818 11 1 3.3646 3.8005 1.2717 12 6 2.4151 1.9344 1.0974 13 6 2.2100 1.5318 2.4890 14 8 1.6685 0.4713 2.7424 15 7 2.6205 2.3351 3.4904 16 6 2.4155 1.9317 4.8838 17 6 2.9686 3.0130 5.8143 18 6 2.7540 2.5920 7.2695 19 7 3.2841 3.6271 8.1605 20 6 3.2032 3.4687 9.5183 21 1 2.7490 2.5806 9.9322 22 6 3.7050 4.4497 10.3626 23 7 4.2590 5.5318 9.8581 24 14 3.5953 4.2334 12.2148 25 1 4.8129 3.5388 12.7049 26 1 3.4902 5.5652 12.8632 27 1 2.3956 3.4243 12.5484 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8727 0.8714 -2.9279 32 1 2.7284 2.5450 -4.4877 33 1 3.7795 4.6053 -3.6530 34 1 3.9861 5.0130 -1.2434 35 1 3.0522 3.1798 3.2885 36 1 1.3497 1.8009 5.0711 37 1 2.9351 0.9918 5.0701 38 1 4.0344 3.1433 5.6268 39 1 2.4493 3.9530 5.6280 40 1 1.6881 2.4620 7.4567 41 1 3.2730 1.6519 7.4561 42 1 3.6917 4.4248 7.7887 43 1 4.6100 6.2171 10.4480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177151129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:29 Heat of formation + Delta-G solvation = -29.582740 kcal Electronic energy + Delta-G solvation = -24995.884137 eV Core-core repulsion = 21234.141270 eV Total energy + Delta-G solvation = -3761.742867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.56771 -40.54512 -39.07541 -37.70191 -37.52626 -35.99341 -33.82435 -32.59036 -31.64774 -30.36483 -29.95988 -27.87609 -27.12456 -25.26145 -23.92218 -23.15393 -22.64856 -22.16893 -21.20748 -19.67079 -19.07779 -18.27801 -17.62560 -17.37963 -17.12082 -16.79693 -16.56225 -16.44191 -15.79289 -15.70199 -15.45222 -15.30840 -15.11088 -14.96882 -14.83892 -14.66958 -14.06411 -13.90145 -13.34042 -12.84418 -12.81590 -12.72032 -12.63670 -12.58984 -12.48078 -12.11485 -12.08788 -11.99575 -11.82733 -11.44815 -10.96434 -10.92335 -10.68235 -10.31488 -9.34741 -9.03791 -8.75728 -7.98507 -5.27577 -0.38803 0.57819 0.84543 1.46870 1.48381 1.56938 1.66802 1.91814 2.03087 2.54609 2.76011 2.92964 3.35498 3.48754 3.68459 3.70063 4.03719 4.10409 4.19094 4.21406 4.23181 4.39508 4.39978 4.44963 4.49969 4.54201 4.65275 4.68683 4.69044 4.75437 4.84113 5.08317 5.14334 5.20822 5.27892 5.28239 5.40035 5.47504 5.53142 5.64826 6.03183 6.23842 6.25853 6.40598 6.50432 6.93691 7.30941 8.05308 8.29083 9.24915 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.002059 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.667422 B =13598.530300 C =14680.380190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.081 3.919 4 C -0.162 4.162 5 C -0.069 4.069 6 C -0.147 4.147 7 C -0.078 4.078 8 C -0.140 4.140 9 C 0.123 3.877 10 N -0.565 5.565 11 H 0.434 0.566 12 C -0.010 4.010 13 C 0.579 3.421 14 O -0.551 6.551 15 N -0.710 5.710 16 C 0.134 3.866 17 C -0.118 4.118 18 C 0.152 3.848 19 N -0.747 5.747 20 C -0.249 4.249 21 H 0.075 0.925 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.975 3.025 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.270 1.270 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.034 0.966 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.376 0.624 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 -3.180 -31.221 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.236 6.236 3 C 0.027 3.973 4 C -0.167 4.167 5 C -0.088 4.088 6 C -0.166 4.166 7 C -0.097 4.097 8 C -0.160 4.160 9 C 0.013 3.987 10 N -0.175 5.175 11 H 0.275 0.725 12 C -0.120 4.120 13 C 0.366 3.634 14 O -0.429 6.429 15 N -0.362 5.362 16 C 0.010 3.990 17 C -0.157 4.157 18 C 0.025 3.975 19 N -0.390 5.390 20 C -0.381 4.381 21 H 0.093 0.907 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.803 3.197 25 H -0.213 1.213 26 H -0.220 1.220 27 H -0.195 1.195 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.053 0.947 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.208 0.792 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.251 -4.170 -30.688 31.261 hybrid contribution 0.338 0.949 1.511 1.816 sum -3.913 -3.221 -29.177 29.614 Atomic orbital electron populations 1.23116 0.77445 1.04453 1.00488 1.85904 1.21346 1.22733 1.93609 1.19013 1.00760 0.87343 0.90176 1.19556 1.07542 0.95522 0.94069 1.20560 0.98333 0.99944 0.89936 1.21051 1.00425 0.94285 1.00810 1.21378 0.96351 0.97470 0.94472 1.20506 1.04265 0.99130 0.92119 1.18446 1.00607 0.96646 0.82957 1.41634 1.52997 1.17358 1.05516 0.72477 1.20150 1.08564 0.90477 0.92823 1.17130 0.78792 0.83927 0.83543 1.90879 1.44152 1.23881 1.83968 1.45757 1.61164 1.23326 1.05961 1.21187 1.01342 0.97835 0.78629 1.21705 1.02119 0.98541 0.93294 1.20674 0.96408 0.91535 0.88909 1.42528 1.71905 1.22050 1.02483 1.19645 1.31440 1.02959 0.84067 0.90702 1.25593 1.01795 0.96811 1.02608 1.69799 1.46502 1.10379 1.35184 0.85122 0.77971 0.76527 0.80033 1.21338 1.21987 1.19504 0.92201 0.87079 0.94711 0.85179 0.83077 0.82170 0.83109 0.75301 0.91287 0.91486 0.90629 0.90525 0.95855 0.95943 0.79210 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 11.13 113.37 1.26 2.07 16 2 O -0.32 -8.86 9.74 -77.98 -0.76 -9.62 16 3 C 0.08 2.11 6.47 24.03 0.16 2.27 16 4 C -0.16 -3.46 6.35 -20.15 -0.13 -3.59 16 5 C -0.07 -1.14 10.06 22.26 0.22 -0.92 16 6 C -0.15 -1.66 9.97 22.03 0.22 -1.44 16 7 C -0.08 -0.75 10.01 22.29 0.22 -0.52 16 8 C -0.14 -1.67 10.08 22.39 0.23 -1.45 16 9 C 0.12 2.17 7.25 39.13 0.28 2.45 16 10 N -0.57 -9.56 6.04 -176.84 -1.07 -10.62 16 11 H 0.43 4.49 8.08 -92.71 -0.75 3.74 16 12 C -0.01 -0.25 6.98 39.78 0.28 0.03 16 13 C 0.58 15.77 7.77 86.34 0.67 16.44 16 14 O -0.55 -19.13 16.19 7.10 0.11 -19.02 16 15 N -0.71 -15.71 5.55 -467.43 -2.59 -18.31 16 16 C 0.13 3.44 5.67 86.38 0.49 3.93 16 17 C -0.12 -3.35 5.44 30.59 0.17 -3.18 16 18 C 0.15 5.85 6.26 86.38 0.54 6.39 16 19 N -0.75 -37.47 5.60 -343.45 -1.92 -39.40 16 20 C -0.25 -13.96 9.99 84.04 0.84 -13.12 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 23 N -0.97 -58.62 13.06 21.65 0.28 -58.33 16 24 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 1.82 8.14 -2.38 -0.02 1.81 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.41 6.47 7.49 -92.71 -0.69 5.78 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.38 19.68 7.67 -92.71 -0.71 18.96 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -76.01 370.86 0.90 -75.10 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -1.10 Total: 26.70 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.92 Total: 5.48 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -5.30 Total: -126.66 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.64 Total: -28.63 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.01 0.90 -75.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177151129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.521 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds