Wall clock time and date at job start Tue Mar 31 2020 11:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47064 * 89.99918 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47160 * 90.00265 * 12 11 9 14 14 H 1.08005 * 120.00138 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99887 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00076 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99799 * 179.97438 * 15 13 12 18 18 H 1.48488 * 109.47128 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46887 * 120.00260 * 17 15 13 20 20 H 1.48504 * 109.46907 * 239.99984 * 17 15 13 21 21 C 1.46499 * 120.00259 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47084 * 90.00100 * 21 11 9 23 23 C 1.47194 * 109.47031 * 180.02562 * 22 21 11 24 24 N 8.18529 * 96.64161 * 308.31562 * 2 1 3 25 25 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 26 26 C 1.38141 * 120.05541 * 359.45293 * 25 6 5 27 27 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 28 28 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 29 29 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 33 33 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 34 34 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 35 35 H 1.09002 * 109.46764 * 209.99954 * 12 11 9 36 36 H 1.08993 * 109.47395 * 329.99746 * 12 11 9 37 37 H 0.97002 * 120.00054 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47249 * 210.00175 * 21 11 9 39 39 H 1.09001 * 109.46741 * 330.00185 * 21 11 9 40 40 H 1.09002 * 109.47139 * 300.00142 * 22 21 11 41 41 H 1.09004 * 109.46828 * 59.99777 * 22 21 11 42 42 H 1.07999 * 119.97019 * 179.70188 * 25 6 5 43 43 H 1.07998 * 120.03323 * 180.24999 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 7 4.2073 5.4551 -1.3781 9 6 4.8083 6.6362 -1.6233 10 8 5.1674 7.3392 -0.6986 11 7 5.0112 7.0381 -2.8937 12 6 5.6650 8.3218 -3.1602 13 6 7.1550 8.1168 -3.2535 14 1 7.5733 7.1291 -3.1265 15 6 7.9844 9.1901 -3.5010 16 7 7.4752 10.3928 -3.6551 17 14 9.8315 8.9361 -3.6160 18 1 10.1478 7.5006 -3.4054 19 1 10.3063 9.3564 -4.9588 20 1 10.5088 9.7496 -2.5744 21 6 4.5780 6.1913 -4.0079 22 6 3.1420 6.5516 -4.3939 23 6 2.7066 5.7004 -5.5131 24 7 2.3758 5.0408 -6.3791 25 6 1.9211 3.6047 0.0080 26 6 1.2915 2.3751 0.0013 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.0209 0.3799 -0.0005 31 1 5.1345 2.5749 -0.0008 32 1 4.9444 4.9376 0.5161 33 1 3.3584 5.7457 0.5177 34 1 3.9204 4.8944 -2.1158 35 1 5.2948 8.7296 -4.1008 36 1 5.4439 9.0172 -2.3506 37 1 8.0587 11.1479 -3.8288 38 1 5.2351 6.3514 -4.8628 39 1 4.6217 5.1446 -3.7071 40 1 2.4849 6.3915 -3.5391 41 1 3.0984 7.5984 -4.6947 42 1 1.3343 4.5113 0.0141 43 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185534172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:19 Heat of formation + Delta-G solvation = -9.487914 kcal Electronic energy + Delta-G solvation = -25561.244632 eV Core-core repulsion = 21800.373142 eV Total energy + Delta-G solvation = -3760.871490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.45964 -39.56257 -37.94285 -36.82389 -35.26063 -34.36661 -32.77278 -31.37840 -30.84704 -30.65488 -28.02999 -27.14905 -25.30373 -23.96942 -22.91886 -22.63131 -21.29512 -19.40667 -18.46129 -17.86253 -17.27791 -16.55352 -16.43245 -16.08299 -15.94029 -15.42283 -14.86002 -14.75342 -14.59379 -14.35919 -14.12004 -13.81549 -13.63161 -13.53671 -13.18861 -12.85598 -12.63501 -12.43749 -12.35994 -12.29127 -12.01399 -11.70308 -11.58842 -11.34451 -11.22627 -11.05641 -10.95925 -10.83962 -10.58669 -10.14640 -9.65582 -9.34946 -9.24797 -8.69104 -8.43177 -8.40254 -7.73098 -6.04247 -4.08052 1.07698 1.11460 2.73558 2.81284 2.94905 3.21662 3.30969 3.39049 3.43059 3.63802 3.88725 4.07887 4.44304 4.49836 4.60866 4.65489 4.67546 4.75450 4.78168 5.06123 5.08564 5.12911 5.14732 5.18762 5.30730 5.37985 5.44613 5.60570 5.78147 5.83298 5.86933 6.01556 6.07421 6.09539 6.45078 6.49481 6.74963 6.85203 7.08064 7.35061 7.49609 7.58628 7.72263 7.94863 8.23717 8.63817 8.93827 9.31794 9.58000 11.03707 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.003007 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.003188 B = 9309.276164 C =10327.634315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.154 4.154 5 C -0.060 4.060 6 C -0.138 4.138 7 C 0.185 3.815 8 N -0.755 5.755 9 C 0.702 3.298 10 O -0.579 6.579 11 N -0.611 5.611 12 C 0.259 3.741 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.121 3.879 22 C -0.051 4.051 23 C 0.216 3.784 24 N -0.446 5.446 25 C -0.060 4.060 26 C -0.211 4.211 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.390 0.610 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.262 0.738 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.546 -16.927 6.413 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.173 4.173 5 C -0.078 4.078 6 C -0.139 4.139 7 C 0.060 3.940 8 N -0.415 5.415 9 C 0.403 3.597 10 O -0.455 6.455 11 N -0.346 5.346 12 C 0.140 3.860 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.006 4.006 22 C -0.093 4.093 23 C -0.102 4.102 24 N -0.124 5.124 25 C -0.079 4.079 26 C -0.230 4.230 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.225 0.775 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.609 -17.333 5.785 23.395 hybrid contribution 0.723 0.011 -0.155 0.740 sum -13.886 -17.322 5.630 22.903 Atomic orbital electron populations 1.23061 0.78349 1.03937 1.01450 1.86071 1.21439 1.27085 1.88650 1.19101 0.92441 0.84129 0.96011 1.20446 0.91317 0.98759 1.06750 1.20988 1.00257 0.90800 0.95790 1.19920 0.93646 0.95139 1.05189 1.19860 0.99825 0.90756 0.83524 1.45419 1.66692 1.21608 1.07750 1.15923 0.78753 0.81038 0.83939 1.90911 1.56607 1.55234 1.42795 1.47519 1.61627 1.23493 1.01973 1.19257 0.91599 0.77816 0.97335 1.21499 0.91762 0.94519 1.48616 0.92381 1.24912 0.98901 0.94999 0.95258 1.69927 1.35305 0.99107 1.49064 0.86474 0.85369 0.78261 0.77488 1.19843 1.21068 1.20943 1.21187 0.92154 0.94436 0.92778 1.19946 0.99164 0.98633 0.91576 1.29227 0.93116 0.93608 0.94220 1.81279 1.09378 1.10530 1.11191 1.20923 0.93923 0.97172 0.95855 1.21228 1.00039 0.92304 1.09428 0.92595 0.92559 0.88275 0.85125 0.84875 0.91020 0.91090 0.77470 0.94747 0.93497 0.92797 0.88692 0.91392 0.87658 0.86398 0.85382 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 10.50 -19.42 -0.20 -3.22 16 3 C 0.13 1.27 6.69 -39.21 -0.26 1.01 16 4 C -0.15 -1.51 9.99 -39.43 -0.39 -1.91 16 5 C -0.06 -0.59 9.69 -39.61 -0.38 -0.97 16 6 C -0.14 -1.41 5.25 -104.60 -0.55 -1.96 16 7 C 0.18 2.28 5.80 -5.19 -0.03 2.25 16 8 N -0.76 -10.46 5.41 -66.41 -0.36 -10.82 16 9 C 0.70 13.37 8.28 -86.92 -0.72 12.65 16 10 O -0.58 -13.90 15.92 5.29 0.08 -13.81 16 11 N -0.61 -11.40 2.46 -180.81 -0.44 -11.84 16 12 C 0.26 6.19 5.16 -5.19 -0.03 6.17 16 13 C -0.52 -14.14 9.39 -34.44 -0.32 -14.46 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.12 1.65 5.13 -4.04 -0.02 1.63 16 22 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 23 C 0.22 2.65 15.44 -20.70 -0.32 2.33 16 24 N -0.45 -6.63 18.55 42.22 0.78 -5.84 16 25 C -0.06 -0.56 9.69 -39.60 -0.38 -0.94 16 26 C -0.21 -1.88 9.04 -39.43 -0.36 -2.23 16 27 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.39 4.52 6.19 -40.82 -0.25 4.26 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 39 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 40 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -34.29 376.45 -7.66 -41.94 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.85 Total: 0.89 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -3.05 Total: 5.58 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.72 Total: -53.44 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.12 Total: -17.03 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.29 -7.66 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185534172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.457 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds