Wall clock time and date at job start Tue Mar 31 2020 11:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47064 * 89.99918 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47160 * 90.00265 * 12 11 9 14 14 H 1.08005 * 120.00138 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99887 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00076 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99799 * 179.97438 * 15 13 12 18 18 H 1.48488 * 109.47128 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46887 * 120.00260 * 17 15 13 20 20 H 1.48504 * 109.46907 * 239.99984 * 17 15 13 21 21 C 1.46499 * 120.00259 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47084 * 90.00100 * 21 11 9 23 23 C 1.47194 * 109.47031 * 180.02562 * 22 21 11 24 24 N 8.18529 * 96.64161 * 308.31562 * 2 1 3 25 25 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 26 26 C 1.38141 * 120.05541 * 359.45293 * 25 6 5 27 27 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 28 28 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 29 29 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 33 33 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 34 34 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 35 35 H 1.09002 * 109.46764 * 209.99954 * 12 11 9 36 36 H 1.08993 * 109.47395 * 329.99746 * 12 11 9 37 37 H 0.97002 * 120.00054 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47249 * 210.00175 * 21 11 9 39 39 H 1.09001 * 109.46741 * 330.00185 * 21 11 9 40 40 H 1.09002 * 109.47139 * 300.00142 * 22 21 11 41 41 H 1.09004 * 109.46828 * 59.99777 * 22 21 11 42 42 H 1.07999 * 119.97019 * 179.70188 * 25 6 5 43 43 H 1.07998 * 120.03323 * 180.24999 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 7 4.2073 5.4551 -1.3781 9 6 4.8083 6.6362 -1.6233 10 8 5.1674 7.3392 -0.6986 11 7 5.0112 7.0381 -2.8937 12 6 5.6650 8.3218 -3.1602 13 6 7.1550 8.1168 -3.2535 14 1 7.5733 7.1291 -3.1265 15 6 7.9844 9.1901 -3.5010 16 7 7.4752 10.3928 -3.6551 17 14 9.8315 8.9361 -3.6160 18 1 10.1478 7.5006 -3.4054 19 1 10.3063 9.3564 -4.9588 20 1 10.5088 9.7496 -2.5744 21 6 4.5780 6.1913 -4.0079 22 6 3.1420 6.5516 -4.3939 23 6 2.7066 5.7004 -5.5131 24 7 2.3758 5.0408 -6.3791 25 6 1.9211 3.6047 0.0080 26 6 1.2915 2.3751 0.0013 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.0209 0.3799 -0.0005 31 1 5.1345 2.5749 -0.0008 32 1 4.9444 4.9376 0.5161 33 1 3.3584 5.7457 0.5177 34 1 3.9204 4.8944 -2.1158 35 1 5.2948 8.7296 -4.1008 36 1 5.4439 9.0172 -2.3506 37 1 8.0587 11.1479 -3.8288 38 1 5.2351 6.3514 -4.8628 39 1 4.6217 5.1446 -3.7071 40 1 2.4849 6.3915 -3.5391 41 1 3.0984 7.5984 -4.6947 42 1 1.3343 4.5113 0.0141 43 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185534172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:19 Heat of formation + Delta-G solvation = -30.899453 kcal Electronic energy + Delta-G solvation = -25562.173106 eV Core-core repulsion = 21800.373142 eV Total energy + Delta-G solvation = -3761.799964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29349 -40.84578 -38.71618 -37.96330 -36.68002 -35.66254 -34.67734 -32.14344 -32.09695 -31.64011 -29.16680 -28.30499 -26.38292 -25.31952 -24.32657 -23.58007 -22.12261 -20.81973 -19.23193 -19.03080 -18.54880 -18.29309 -17.40444 -17.24129 -16.63181 -16.45614 -16.28879 -16.08078 -15.76701 -15.31174 -15.06159 -15.01716 -14.64830 -14.47212 -14.38317 -14.25354 -13.65791 -13.59686 -13.50400 -13.41361 -13.12038 -12.90855 -12.79228 -12.69779 -12.48606 -12.40552 -12.14341 -12.00013 -11.88696 -11.71935 -11.61055 -10.97335 -10.54516 -10.06194 -9.94773 -9.30537 -9.14955 -8.12963 -6.24705 0.31435 0.40437 1.41484 1.44233 1.54483 1.68033 1.81849 1.98427 2.38387 2.39182 2.49022 2.75221 3.03156 3.18130 3.44296 3.78548 3.85507 3.97603 4.03798 4.11718 4.24678 4.41205 4.43526 4.44422 4.49528 4.63201 4.74097 4.78658 4.80571 4.86154 5.02942 5.11169 5.11378 5.27138 5.36838 5.38316 5.63096 5.66995 5.67661 5.79881 5.89721 6.19376 6.23890 6.44409 6.59512 6.85256 7.25618 7.42162 7.85077 8.93265 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.003007 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.003188 B = 9309.276164 C =10327.634315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.121 3.879 4 C -0.166 4.166 5 C -0.063 4.063 6 C -0.144 4.144 7 C 0.188 3.812 8 N -0.732 5.732 9 C 0.700 3.300 10 O -0.635 6.635 11 N -0.612 5.612 12 C 0.275 3.725 13 C -0.536 4.536 14 H 0.051 0.949 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.285 1.285 21 C 0.118 3.882 22 C -0.037 4.037 23 C 0.244 3.756 24 N -0.487 5.487 25 C -0.058 4.058 26 C -0.211 4.211 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.037 0.963 36 H 0.005 0.995 37 H 0.265 0.735 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -18.631 6.180 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.076 3.924 4 C -0.184 4.184 5 C -0.081 4.081 6 C -0.145 4.145 7 C 0.064 3.936 8 N -0.391 5.391 9 C 0.401 3.599 10 O -0.515 6.515 11 N -0.346 5.346 12 C 0.154 3.846 13 C -0.575 4.575 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.211 1.211 21 C -0.007 4.007 22 C -0.078 4.078 23 C -0.073 4.073 24 N -0.165 5.165 25 C -0.077 4.077 26 C -0.229 4.229 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.161 0.839 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.728 -19.112 5.520 25.359 hybrid contribution 0.979 0.457 -0.038 1.081 sum -14.749 -18.655 5.482 24.405 Atomic orbital electron populations 1.23342 0.76468 1.05519 1.02318 1.86054 1.23466 1.26997 1.88499 1.19306 0.92677 0.84769 0.95657 1.20597 0.91803 0.98966 1.07069 1.21055 1.00575 0.90813 0.95693 1.19695 0.94112 0.93802 1.06888 1.19870 0.99470 0.92023 0.82249 1.45201 1.64977 1.19746 1.09133 1.16084 0.78695 0.81839 0.83242 1.90873 1.58962 1.57207 1.44498 1.47248 1.61422 1.22611 1.03360 1.18719 0.90688 0.79557 0.95645 1.21804 0.93491 0.94154 1.48054 0.93097 1.25700 1.03177 0.94842 0.95115 1.70024 1.36790 0.99799 1.49999 0.85523 0.80296 0.78177 0.77723 1.19402 1.19905 1.21130 1.21379 0.93602 0.94821 0.90917 1.19837 0.97540 0.98532 0.91936 1.29220 0.91943 0.92601 0.93518 1.81323 1.10769 1.11926 1.12487 1.21093 0.93496 0.98038 0.95066 1.21454 1.01183 0.91660 1.08637 0.91542 0.91778 0.86528 0.84468 0.84496 0.92322 0.91212 0.75745 0.94459 0.97648 0.92629 0.89480 0.88881 0.85109 0.85865 0.83921 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.72 10.50 -92.39 -0.97 -6.69 16 3 C 0.12 2.18 6.69 22.51 0.15 2.33 16 4 C -0.17 -3.03 9.99 22.37 0.22 -2.80 16 5 C -0.06 -1.16 9.69 22.25 0.22 -0.94 16 6 C -0.14 -2.72 5.25 -19.85 -0.10 -2.82 16 7 C 0.19 4.48 5.80 85.63 0.50 4.98 16 8 N -0.73 -19.31 5.41 -482.29 -2.61 -21.92 16 9 C 0.70 26.55 8.28 179.05 1.48 28.04 16 10 O -0.63 -31.25 15.92 -3.98 -0.06 -31.31 16 11 N -0.61 -22.61 2.46 -844.21 -2.07 -24.69 16 12 C 0.28 13.42 5.16 85.63 0.44 13.86 16 13 C -0.54 -29.22 9.39 25.60 0.24 -28.98 16 14 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 15 C 0.01 0.59 5.46 84.66 0.46 1.05 16 16 N -0.93 -53.83 13.29 21.45 0.28 -53.54 16 17 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 C 0.12 3.01 5.13 86.38 0.44 3.45 16 22 C -0.04 -0.70 6.03 28.79 0.17 -0.53 16 23 C 0.24 5.43 15.44 89.42 1.38 6.81 16 24 N -0.49 -13.62 18.55 20.03 0.37 -13.25 16 25 C -0.06 -0.94 9.69 22.25 0.22 -0.72 16 26 C -0.21 -3.20 9.04 22.37 0.20 -2.99 16 27 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 28 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 29 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.41 8.36 6.19 -92.71 -0.57 7.78 16 35 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 36 H 0.01 0.31 7.42 -2.39 -0.02 0.29 16 37 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.09 2.41 8.07 -2.39 -0.02 2.39 16 39 H 0.09 1.91 6.36 -2.39 -0.02 1.90 16 40 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.15 1.54 6.30 -2.91 -0.02 1.52 16 Total: -1.00 -75.62 376.45 4.56 -71.06 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.46 Total: 12.28 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.14 Total: 21.99 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.03 Total: -113.40 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.03 Total: -38.00 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -75.62 4.56 -71.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185534172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.163 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds