Wall clock time and date at job start Tue Mar 31 2020 11:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47038 * 269.98132 * 8 7 6 10 10 C 1.34779 * 119.99854 * 180.02562 * 9 8 7 11 11 O 1.21578 * 120.00009 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99897 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00107 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47340 * 89.99710 * 13 12 10 15 15 H 1.07999 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00061 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99799 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47372 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.47045 * 209.99720 * 18 16 14 21 21 H 1.48502 * 109.47203 * 329.99676 * 18 16 14 22 22 C 1.46502 * 120.00289 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.47045 * 89.99659 * 22 12 10 24 24 C 1.47203 * 109.47012 * 180.02562 * 23 22 12 25 25 N 8.23928 * 113.92751 * 302.07658 * 2 1 3 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 34 34 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 35 35 H 0.97000 * 120.00390 * 359.97438 * 9 8 7 36 36 H 1.09004 * 109.47194 * 209.99956 * 13 12 10 37 37 H 1.09003 * 109.46767 * 329.99453 * 13 12 10 38 38 H 0.97002 * 120.00174 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47286 * 210.00120 * 22 12 10 40 40 H 1.09005 * 109.46800 * 330.00428 * 22 12 10 41 41 H 1.08996 * 109.47455 * 300.00357 * 23 22 12 42 42 H 1.09005 * 109.46694 * 60.00703 * 23 22 12 43 43 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 7 6.0484 2.6242 -1.3810 10 6 7.3717 2.6950 -1.6272 11 8 8.1605 2.7377 -0.7031 12 7 7.8204 2.7183 -2.8978 13 6 9.2586 2.7958 -3.1655 14 6 9.8284 1.4036 -3.2563 15 1 9.1836 0.5468 -3.1279 16 6 11.1727 1.2237 -3.5043 17 7 11.6701 0.0089 -3.5830 18 14 12.2878 2.7057 -3.7271 19 1 12.8392 3.1129 -2.4097 20 1 13.4026 2.3532 -4.6426 21 1 11.5082 3.8292 -4.3060 22 6 6.8699 2.6663 -4.0115 23 6 6.4612 4.0886 -4.4000 24 6 5.5057 4.0362 -5.5186 25 7 4.7707 3.9995 -6.3815 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.8756 3.5067 0.5138 34 1 5.9714 1.7293 0.5143 35 1 5.4191 2.5898 -2.1183 36 1 9.4253 3.3187 -4.1073 37 1 9.7499 3.3375 -2.3572 38 1 12.6159 -0.1177 -3.7571 39 1 7.3373 2.1763 -4.8656 40 1 5.9862 2.1042 -3.7089 41 1 5.9937 4.5785 -3.5460 42 1 7.3448 4.6506 -4.7026 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186198719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:25 Heat of formation + Delta-G solvation = -3.589523 kcal Electronic energy + Delta-G solvation = -25679.698297 eV Core-core repulsion = 21919.082581 eV Total energy + Delta-G solvation = -3760.615717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46478 -39.65051 -37.91692 -36.94305 -35.40245 -34.54000 -32.72399 -31.41134 -30.98885 -30.54652 -28.03478 -27.57317 -25.75088 -24.01273 -22.80620 -22.34785 -21.24860 -19.46097 -18.26678 -17.78047 -17.20922 -16.77238 -16.54381 -16.23889 -16.11110 -15.95946 -14.95766 -14.92138 -14.45438 -14.35263 -13.99621 -13.85860 -13.71942 -13.45297 -13.15567 -12.83427 -12.63562 -12.53967 -12.44585 -12.28433 -12.18874 -11.81645 -11.70155 -11.53532 -11.38528 -11.07808 -11.05518 -10.86739 -10.51874 -10.18348 -9.62379 -9.46147 -9.10011 -8.77000 -8.57373 -8.45936 -7.79719 -6.06777 -4.05621 0.96632 1.20030 2.70260 2.78422 2.96660 3.14308 3.30681 3.35902 3.38772 3.58934 3.80154 4.01464 4.40520 4.47834 4.51092 4.54999 4.76422 4.80736 4.82265 4.99047 5.07778 5.08213 5.11785 5.16305 5.25839 5.27279 5.37976 5.56030 5.72884 5.78860 5.84546 6.01944 6.03618 6.15844 6.37717 6.48392 6.51354 6.75897 6.86784 7.12170 7.22298 7.50656 7.53835 7.63819 8.48704 8.50578 8.97573 9.21222 9.53361 11.06715 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.003169 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.039982 B = 8833.025108 C = 9647.744203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.123 3.877 4 C -0.205 4.205 5 C -0.084 4.084 6 C -0.138 4.138 7 C -0.063 4.063 8 C 0.180 3.820 9 N -0.753 5.753 10 C 0.705 3.295 11 O -0.578 6.578 12 N -0.606 5.606 13 C 0.230 3.770 14 C -0.529 4.529 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.120 3.880 23 C -0.052 4.052 24 C 0.216 3.784 25 N -0.443 5.443 26 C -0.131 4.131 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.392 0.608 36 H 0.032 0.968 37 H 0.040 0.960 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.150 7.366 6.231 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.078 3.922 4 C -0.224 4.224 5 C -0.102 4.102 6 C -0.157 4.157 7 C -0.063 4.063 8 C 0.056 3.944 9 N -0.412 5.412 10 C 0.407 3.593 11 O -0.454 6.454 12 N -0.341 5.341 13 C 0.109 3.891 14 C -0.568 4.568 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.006 4.006 23 C -0.094 4.094 24 C -0.102 4.102 25 N -0.120 5.120 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.227 0.773 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.340 7.042 5.609 24.086 hybrid contribution 0.292 0.689 -0.182 0.770 sum -22.048 7.731 5.428 23.986 Atomic orbital electron populations 1.23052 0.78429 1.04000 1.01251 1.86103 1.21326 1.26869 1.88691 1.19015 0.92291 0.84214 0.96654 1.21264 0.99995 0.92486 1.08628 1.20931 0.94573 0.96968 0.97718 1.21048 0.93634 0.98207 1.02764 1.19769 0.95409 0.92375 0.98766 1.19952 0.87487 1.03324 0.83646 1.45307 1.06181 1.81960 1.07718 1.15838 0.81668 0.78062 0.83741 1.90913 1.54557 1.57147 1.42779 1.47135 1.08272 1.76368 1.02287 1.19624 0.74683 0.98340 0.96412 1.21362 0.94437 0.91828 1.49184 0.90689 1.24856 0.97791 0.95691 0.94699 1.69895 1.13673 1.20704 1.49314 0.86870 0.80919 0.83352 0.78609 1.19913 1.21227 1.18969 1.21226 0.93793 0.92957 0.92671 1.19937 0.95839 1.01854 0.91771 1.29010 0.93759 0.93216 0.94239 1.81130 1.11128 1.08518 1.11243 1.20435 0.91331 0.98578 1.04692 0.92699 0.92671 0.88211 0.85592 0.85693 0.85469 0.90587 0.90610 0.77292 0.95021 0.94179 0.92589 0.88407 0.91015 0.87526 0.86579 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.26 10.50 -19.44 -0.20 -3.46 16 3 C 0.12 1.29 6.69 -39.22 -0.26 1.03 16 4 C -0.20 -1.78 9.04 -39.43 -0.36 -2.14 16 5 C -0.08 -0.69 10.04 -39.60 -0.40 -1.09 16 6 C -0.14 -1.25 9.70 -39.56 -0.38 -1.63 16 7 C -0.06 -0.66 5.25 -104.65 -0.55 -1.21 16 8 C 0.18 2.23 5.80 -5.19 -0.03 2.20 16 9 N -0.75 -10.35 5.41 -66.41 -0.36 -10.71 16 10 C 0.71 13.20 8.28 -86.92 -0.72 12.48 16 11 O -0.58 -13.54 15.92 5.30 0.08 -13.46 16 12 N -0.61 -11.00 2.46 -180.80 -0.44 -11.45 16 13 C 0.23 5.14 4.23 -5.20 -0.02 5.12 16 14 C -0.53 -14.53 9.94 -34.44 -0.34 -14.87 16 15 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 18 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 22 C 0.12 1.60 5.13 -4.04 -0.02 1.58 16 23 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 24 C 0.22 2.55 15.43 -20.82 -0.32 2.22 16 25 N -0.44 -6.40 18.52 42.08 0.78 -5.62 16 26 C -0.13 -1.46 9.64 -39.44 -0.38 -1.84 16 27 H 0.05 0.27 7.67 -51.93 -0.40 -0.13 16 28 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.13 0.82 6.30 -52.49 -0.33 0.49 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.08 1.03 8.08 -51.93 -0.42 0.62 16 35 H 0.39 4.50 6.19 -40.82 -0.25 4.24 16 36 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 37 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.10 1.40 8.07 -51.93 -0.42 0.98 16 40 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 41 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -35.61 372.82 -7.31 -42.92 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.82 Total: 2.23 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.07 Total: 4.25 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.75 Total: -54.21 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.12 Total: -16.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.61 -7.31 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186198719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.331 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds