Wall clock time and date at job start Tue Mar 31 2020 11:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47038 * 269.98132 * 8 7 6 10 10 C 1.34779 * 119.99854 * 180.02562 * 9 8 7 11 11 O 1.21578 * 120.00009 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99897 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00107 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47340 * 89.99710 * 13 12 10 15 15 H 1.07999 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00061 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99799 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47372 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.47045 * 209.99720 * 18 16 14 21 21 H 1.48502 * 109.47203 * 329.99676 * 18 16 14 22 22 C 1.46502 * 120.00289 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.47045 * 89.99659 * 22 12 10 24 24 C 1.47203 * 109.47012 * 180.02562 * 23 22 12 25 25 N 8.23928 * 113.92751 * 302.07658 * 2 1 3 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 34 34 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 35 35 H 0.97000 * 120.00390 * 359.97438 * 9 8 7 36 36 H 1.09004 * 109.47194 * 209.99956 * 13 12 10 37 37 H 1.09003 * 109.46767 * 329.99453 * 13 12 10 38 38 H 0.97002 * 120.00174 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47286 * 210.00120 * 22 12 10 40 40 H 1.09005 * 109.46800 * 330.00428 * 22 12 10 41 41 H 1.08996 * 109.47455 * 300.00357 * 23 22 12 42 42 H 1.09005 * 109.46694 * 60.00703 * 23 22 12 43 43 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 7 6.0484 2.6242 -1.3810 10 6 7.3717 2.6950 -1.6272 11 8 8.1605 2.7377 -0.7031 12 7 7.8204 2.7183 -2.8978 13 6 9.2586 2.7958 -3.1655 14 6 9.8284 1.4036 -3.2563 15 1 9.1836 0.5468 -3.1279 16 6 11.1727 1.2237 -3.5043 17 7 11.6701 0.0089 -3.5830 18 14 12.2878 2.7057 -3.7271 19 1 12.8392 3.1129 -2.4097 20 1 13.4026 2.3532 -4.6426 21 1 11.5082 3.8292 -4.3060 22 6 6.8699 2.6663 -4.0115 23 6 6.4612 4.0886 -4.4000 24 6 5.5057 4.0362 -5.5186 25 7 4.7707 3.9995 -6.3815 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.8756 3.5067 0.5138 34 1 5.9714 1.7293 0.5143 35 1 5.4191 2.5898 -2.1183 36 1 9.4253 3.3187 -4.1073 37 1 9.7499 3.3375 -2.3572 38 1 12.6159 -0.1177 -3.7571 39 1 7.3373 2.1763 -4.8656 40 1 5.9862 2.1042 -3.7089 41 1 5.9937 4.5785 -3.5460 42 1 7.3448 4.6506 -4.7026 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186198719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:24 Heat of formation + Delta-G solvation = -27.583575 kcal Electronic energy + Delta-G solvation = -25680.738758 eV Core-core repulsion = 21919.082581 eV Total energy + Delta-G solvation = -3761.656177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34736 -40.87929 -38.69727 -38.02592 -36.76254 -35.78921 -34.67452 -32.39711 -32.24603 -31.31623 -29.63600 -28.19251 -26.83333 -25.24668 -24.10351 -23.47837 -22.08283 -20.84082 -19.34641 -19.07420 -18.54295 -18.22501 -17.44278 -17.25988 -16.93330 -16.63629 -16.37536 -16.02225 -15.86259 -15.45860 -15.22322 -14.94254 -14.75638 -14.49433 -14.35850 -14.05038 -13.74619 -13.67774 -13.50893 -13.49034 -13.23962 -12.98679 -12.79063 -12.68395 -12.45592 -12.33848 -12.02148 -11.95895 -11.91119 -11.74375 -11.64985 -11.07247 -10.72841 -10.11474 -9.91020 -9.30906 -9.17245 -8.23694 -6.28119 0.20876 0.48279 1.42133 1.47243 1.54217 1.68804 1.85417 1.92493 2.35287 2.39560 2.40924 2.73796 3.01533 3.13225 3.40268 3.67223 3.88031 4.00919 4.09101 4.13750 4.24652 4.35261 4.39965 4.40166 4.49858 4.54445 4.69977 4.74079 4.81138 4.83539 4.88577 5.02223 5.05395 5.09269 5.32199 5.47613 5.54846 5.57878 5.62264 5.64601 5.80345 6.09626 6.37788 6.46241 6.61046 6.75004 7.16075 7.33818 7.76948 8.93628 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.003169 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.039982 B = 8833.025108 C = 9647.744203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.110 3.890 4 C -0.201 4.201 5 C -0.079 4.079 6 C -0.136 4.136 7 C -0.066 4.066 8 C 0.182 3.818 9 N -0.731 5.731 10 C 0.702 3.298 11 O -0.631 6.631 12 N -0.609 5.609 13 C 0.239 3.761 14 C -0.533 4.533 15 H 0.025 0.975 16 C 0.006 3.994 17 N -0.952 5.952 18 Si 0.947 3.053 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.224 1.224 22 C 0.115 3.885 23 C -0.037 4.037 24 C 0.244 3.756 25 N -0.488 5.488 26 C -0.153 4.153 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.237 10.625 5.786 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.065 3.935 4 C -0.220 4.220 5 C -0.097 4.097 6 C -0.155 4.155 7 C -0.067 4.067 8 C 0.059 3.941 9 N -0.390 5.390 10 C 0.403 3.597 11 O -0.512 6.512 12 N -0.342 5.342 13 C 0.116 3.884 14 C -0.572 4.572 15 H 0.043 0.957 16 C -0.191 4.191 17 N -0.593 5.593 18 Si 0.770 3.230 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.146 1.146 22 C -0.010 4.010 23 C -0.078 4.078 24 C -0.073 4.073 25 N -0.166 5.166 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.243 0.757 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.531 10.312 5.130 27.100 hybrid contribution 0.794 -0.471 0.025 0.923 sum -23.737 9.841 5.155 26.208 Atomic orbital electron populations 1.23330 0.76393 1.05423 1.02381 1.86069 1.23559 1.27208 1.88783 1.19157 0.92173 0.85088 0.97131 1.21582 1.01224 0.91925 1.07234 1.21301 0.94365 0.97908 0.96147 1.21261 0.94183 0.98126 1.01902 1.19518 0.93924 0.92927 1.00294 1.19959 0.89018 1.02636 0.82518 1.45108 1.04584 1.80299 1.08977 1.16040 0.82675 0.77708 0.83256 1.90872 1.56312 1.59555 1.44440 1.46978 1.07575 1.76267 1.03429 1.19329 0.76861 0.94948 0.97220 1.21680 0.94203 0.93103 1.48208 0.95663 1.25893 0.99741 0.99074 0.94415 1.70076 1.14175 1.23686 1.51369 0.85731 0.78685 0.80171 0.78435 1.20400 1.21059 1.14594 1.21404 0.93199 0.95570 0.90797 1.19858 0.96279 0.99590 0.92050 1.29098 0.92847 0.91842 0.93553 1.81175 1.12802 1.09857 1.12761 1.20431 0.92118 0.98365 1.06300 0.91355 0.91601 0.86859 0.83193 0.82655 0.83722 0.89991 0.92764 0.75659 0.91795 0.95462 0.92595 0.89417 0.89456 0.84818 0.84929 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.88 10.50 -92.48 -0.97 -7.85 16 3 C 0.11 2.20 6.69 22.50 0.15 2.35 16 4 C -0.20 -2.95 9.04 22.37 0.20 -2.74 16 5 C -0.08 -1.02 10.04 22.26 0.22 -0.80 16 6 C -0.14 -2.09 9.70 22.28 0.22 -1.88 16 7 C -0.07 -1.33 5.25 -19.88 -0.10 -1.43 16 8 C 0.18 4.52 5.80 85.63 0.50 5.01 16 9 N -0.73 -19.59 5.41 -482.30 -2.61 -22.20 16 10 C 0.70 26.15 8.28 179.05 1.48 27.64 16 11 O -0.63 -30.24 15.92 -3.96 -0.06 -30.30 16 12 N -0.61 -21.54 2.46 -844.20 -2.07 -23.61 16 13 C 0.24 10.43 4.23 85.63 0.36 10.79 16 14 C -0.53 -30.01 9.94 25.60 0.25 -29.75 16 15 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 16 C 0.01 0.34 5.47 84.66 0.46 0.80 16 17 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 18 Si 0.95 42.49 27.47 68.60 1.88 44.38 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.22 -8.47 6.54 99.48 0.65 -7.82 16 22 C 0.12 2.85 5.13 86.38 0.44 3.29 16 23 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 24 C 0.24 5.06 15.43 89.46 1.38 6.44 16 25 N -0.49 -13.15 18.52 19.98 0.37 -12.78 16 26 C -0.15 -3.43 9.64 22.36 0.22 -3.21 16 27 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 28 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.15 1.41 6.30 -2.91 -0.02 1.39 16 31 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 33 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.41 8.62 6.19 -92.71 -0.57 8.04 16 36 H 0.06 2.41 7.13 -2.38 -0.02 2.39 16 37 H 0.03 1.28 6.85 -2.39 -0.02 1.27 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 40 H 0.09 1.87 6.36 -2.38 -0.02 1.85 16 41 H 0.13 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -82.39 372.82 4.31 -78.08 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.41 Total: 16.48 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 7.07 Total: 17.38 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -4.02 Total: -118.17 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.03 Total: -38.15 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Total: -82.39 4.31 -78.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186198719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.494 kcal (2) G-P(sol) polarization free energy of solvation -82.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds