Wall clock time and date at job start Tue Mar 31 2020 11:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 Si 1.63107 * 113.99866 * 2 1 4 4 C 1.86301 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47212 * 179.97438 * 6 5 4 8 8 C 1.46493 * 119.99899 * 270.00188 * 7 6 5 9 9 C 1.34773 * 119.99455 * 90.00023 * 7 6 5 10 10 O 1.21282 * 120.00692 * 0.02562 * 9 7 6 11 11 C 1.50705 * 119.99759 * 180.02562 * 9 7 6 12 12 H 1.08997 * 115.54906 * 34.27177 * 11 9 7 13 13 C 1.53000 * 117.49837 * 248.60889 * 11 9 7 14 14 C 1.52997 * 60.00033 * 252.50640 * 13 11 9 15 15 C 1.50694 * 117.49989 * 252.50817 * 14 13 11 16 16 N 1.27951 * 119.99841 * 43.62088 * 15 14 13 17 17 Si 1.86795 * 120.00175 * 223.62431 * 15 14 13 18 18 H 1.48493 * 109.47537 * 59.99908 * 17 15 14 19 19 H 1.48503 * 109.47097 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46827 * 299.99767 * 17 15 14 21 21 O 1.63098 * 109.46938 * 60.00012 * 3 2 1 22 22 C 1.42903 * 114.00287 * 60.00082 * 21 3 2 23 23 O 1.63095 * 109.47207 * 300.00108 * 3 2 1 24 24 C 1.42908 * 113.99888 * 299.99765 * 23 3 2 25 25 H 1.09000 * 109.47431 * 299.99868 * 1 2 3 26 26 H 1.09001 * 109.47018 * 60.00119 * 1 2 3 27 27 H 1.09006 * 109.47086 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47148 * 60.00019 * 4 3 2 29 29 H 1.09001 * 109.46900 * 300.00171 * 4 3 2 30 30 H 1.09002 * 109.47103 * 59.99797 * 5 4 3 31 31 H 1.08998 * 109.46862 * 300.00610 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 34 34 H 1.08994 * 109.47405 * 90.00269 * 8 7 6 35 35 H 1.09006 * 109.46911 * 209.99921 * 8 7 6 36 36 H 1.08996 * 109.47170 * 329.99434 * 8 7 6 37 37 H 1.09005 * 117.50055 * 0.02562 * 13 11 9 38 38 H 1.08998 * 117.50115 * 145.01119 * 13 11 9 39 39 H 1.09000 * 117.49741 * 107.48682 * 14 13 11 40 40 H 0.96994 * 119.99843 * 179.97438 * 16 15 14 41 41 H 1.08999 * 109.46975 * 59.99472 * 22 21 3 42 42 H 1.08999 * 109.47290 * 179.97438 * 22 21 3 43 43 H 1.09005 * 109.46833 * 299.99656 * 22 21 3 44 44 H 1.09003 * 109.46825 * 60.00524 * 24 23 3 45 45 H 1.09000 * 109.46769 * 179.97438 * 24 23 3 46 46 H 1.08994 * 109.47007 * 300.00032 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 14 2.0923 1.4901 0.0000 4 6 3.9495 1.3430 0.0008 5 6 4.5718 2.7407 0.0014 6 6 6.0970 2.6199 0.0014 7 7 6.6929 3.9583 0.0014 8 6 6.9907 4.6274 -1.2672 9 6 6.9669 4.5738 1.1687 10 8 6.7207 4.0197 2.2190 11 6 7.5793 5.9508 1.1687 12 1 7.2642 6.6055 0.3562 13 6 9.0211 6.0827 1.6635 14 6 7.8664 6.5963 2.5259 15 6 7.6916 8.0889 2.6374 16 7 7.7918 8.8244 1.5952 17 14 7.3288 8.8654 4.2971 18 1 8.4370 8.5628 5.2381 19 1 7.2016 10.3364 4.1382 20 1 6.0588 8.3144 4.8344 21 8 1.6110 2.2994 1.3317 22 6 1.9843 1.6717 2.5600 23 8 1.6110 2.2995 -1.3316 24 6 1.9844 1.6717 -2.5600 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.2715 0.8019 -0.8890 29 1 4.2708 0.8022 0.8910 30 1 4.2498 3.2814 0.8914 31 1 4.2505 3.2818 -0.8885 32 1 6.4187 2.0794 -0.8888 33 1 6.4186 2.0786 0.8912 34 1 6.1259 5.2114 -1.5819 35 1 7.8476 5.2886 -1.1369 36 1 7.2206 3.8803 -2.0269 37 1 9.5269 5.1735 1.9885 38 1 9.6544 6.8244 1.1767 39 1 7.6123 6.0250 3.4187 40 1 7.6789 9.7851 1.6669 41 1 3.0699 1.5873 2.6097 42 1 1.6281 2.2715 3.3975 43 1 1.5399 0.6776 2.6097 44 1 1.5400 0.6776 -2.6097 45 1 1.6274 2.2711 -3.3975 46 1 3.0699 1.5874 -2.6096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186976415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:30 Heat of formation + Delta-G solvation = -179.375859 kcal Electronic energy + Delta-G solvation = -25471.527887 eV Core-core repulsion = 21713.238540 eV Total energy + Delta-G solvation = -3758.289347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14839 -38.61087 -38.19612 -37.97555 -37.24414 -36.76408 -34.95982 -34.02408 -28.58828 -27.75055 -27.50619 -27.29866 -27.03552 -25.65036 -24.23897 -22.36734 -20.49751 -19.89281 -18.68762 -18.37562 -17.61276 -17.40721 -17.37619 -16.95759 -16.41238 -16.24666 -16.12268 -15.71610 -15.60788 -15.53575 -15.24244 -15.09269 -14.99565 -14.86405 -14.44800 -14.06455 -13.85426 -13.70932 -13.52341 -13.12355 -12.92554 -12.90917 -12.63400 -12.57635 -12.40393 -12.15534 -12.04552 -11.96729 -11.62670 -11.51927 -11.35358 -11.25866 -11.16897 -10.95268 -10.67733 -10.47144 -9.89414 -9.54616 0.70469 1.02017 1.05467 1.39161 1.56472 1.75114 1.86422 1.96520 2.01407 2.12010 2.18109 3.02295 3.38434 3.66327 3.86015 3.98111 4.04554 4.12143 4.22186 4.24237 4.25788 4.29547 4.34698 4.38188 4.39274 4.43352 4.45506 4.50067 4.54366 4.72137 4.73130 4.74524 4.77970 4.81703 4.83700 4.86545 4.91310 5.05131 5.07345 5.18003 5.18755 5.20147 5.40011 5.62371 5.80686 6.41361 6.85475 7.27254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.681 6.681 3 Si 1.648 2.352 4 C -0.529 4.529 5 C -0.116 4.116 6 C 0.118 3.882 7 N -0.615 5.615 8 C 0.076 3.924 9 C 0.543 3.457 10 O -0.537 6.537 11 C -0.168 4.168 12 H 0.135 0.865 13 C -0.121 4.121 14 C -0.104 4.104 15 C 0.021 3.979 16 N -0.639 5.639 17 Si 0.947 3.053 18 H -0.234 1.234 19 H -0.250 1.250 20 H -0.235 1.235 21 O -0.667 6.667 22 C 0.060 3.940 23 O -0.666 6.666 24 C 0.060 3.940 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.341 0.659 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.085 0.915 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -0.623 -2.402 2.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.642 6.642 3 Si 1.684 2.316 4 C -0.604 4.604 5 C -0.155 4.155 6 C -0.005 4.005 7 N -0.348 5.348 8 C -0.067 4.067 9 C 0.331 3.669 10 O -0.414 6.414 11 C -0.190 4.190 12 H 0.153 0.847 13 C -0.160 4.160 14 C -0.124 4.124 15 C -0.226 4.226 16 N -0.252 5.252 17 Si 0.763 3.237 18 H -0.157 1.157 19 H -0.173 1.173 20 H -0.157 1.157 21 O -0.627 6.627 22 C -0.035 4.035 23 O -0.627 6.627 24 C -0.035 4.035 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.205 -0.539 -2.068 2.147 hybrid contribution 0.436 0.320 0.057 0.544 sum 0.641 -0.220 -2.012 2.123 Atomic orbital electron populations 1.22128 0.77856 1.03211 1.00674 1.85555 1.23882 1.64407 1.90365 0.72649 0.60669 0.44866 0.53413 1.27762 1.27457 0.99730 1.05481 1.21319 0.95084 0.96336 1.02763 1.21631 0.92880 0.82751 1.03200 1.47811 1.62482 1.18208 1.06334 1.21872 1.01484 0.98264 0.85106 1.19771 0.77590 0.86325 0.83227 1.90693 1.53173 1.66509 1.31055 1.22291 1.01297 0.95441 0.99983 0.84734 1.23029 0.89149 1.03158 1.00645 1.21516 1.04031 0.91389 0.95418 1.29568 0.92555 0.97081 1.03406 1.68049 1.11002 1.12086 1.34109 0.85543 0.83112 0.79393 0.75664 1.15712 1.17269 1.15728 1.85399 1.82189 1.66072 1.29045 1.22158 0.99467 0.96780 0.85083 1.85422 1.82224 1.66018 1.28992 1.22142 0.99200 0.96926 0.85196 0.93287 0.93328 0.89883 0.90090 0.89869 0.91187 0.91620 0.90584 0.89850 0.92341 0.90418 0.90886 0.87765 0.87078 0.84772 0.84242 0.93099 0.89586 0.93271 0.93241 0.89625 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.00 10.19 101.05 1.03 1.03 16 2 O -0.68 -1.04 8.92 -63.55 -0.57 -1.60 16 3 Si 1.65 2.28 9.84 -169.99 -1.67 0.60 16 4 C -0.53 -0.31 4.14 37.15 0.15 -0.15 16 5 C -0.12 -0.18 4.91 -26.74 -0.13 -0.31 16 6 C 0.12 0.15 5.45 -4.04 -0.02 0.12 16 7 N -0.62 -0.85 2.87 -181.57 -0.52 -1.37 16 8 C 0.08 -0.12 10.05 59.84 0.60 0.48 16 9 C 0.54 1.78 7.46 -10.98 -0.08 1.69 16 10 O -0.54 -3.47 15.84 5.56 0.09 -3.38 16 11 C -0.17 -0.20 4.30 -91.77 -0.39 -0.59 16 12 H 0.13 0.09 6.94 -51.93 -0.36 -0.27 16 13 C -0.12 0.00 9.82 -26.73 -0.26 -0.26 16 14 C -0.10 -0.10 5.25 -91.78 -0.48 -0.58 16 15 C 0.02 0.00 5.45 -13.90 -0.08 -0.07 16 16 N -0.64 -0.44 13.03 56.23 0.73 0.29 16 17 Si 0.95 -0.71 29.58 -169.99 -5.03 -5.74 16 18 H -0.23 0.07 7.11 56.52 0.40 0.47 16 19 H -0.25 0.09 7.11 56.52 0.40 0.49 16 20 H -0.23 -0.08 7.11 56.52 0.40 0.32 16 21 O -0.67 -1.99 8.92 -63.55 -0.57 -2.56 16 22 C 0.06 0.04 10.20 101.05 1.03 1.07 16 23 O -0.67 -1.44 8.92 -63.55 -0.57 -2.01 16 24 C 0.06 -0.04 10.20 101.05 1.03 0.99 16 25 H 0.05 -0.02 7.83 -51.93 -0.41 -0.43 16 26 H 0.05 -0.03 7.83 -51.93 -0.41 -0.44 16 27 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 28 H 0.08 -0.05 7.48 -51.93 -0.39 -0.44 16 29 H 0.08 0.04 7.48 -51.93 -0.39 -0.34 16 30 H 0.07 0.24 7.97 -51.93 -0.41 -0.17 16 31 H 0.07 0.07 7.96 -51.93 -0.41 -0.35 16 32 H 0.08 -0.05 7.89 -51.93 -0.41 -0.46 16 33 H 0.08 0.23 7.42 -51.93 -0.39 -0.16 16 34 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 35 H 0.08 -0.18 6.64 -51.93 -0.34 -0.53 16 36 H 0.07 -0.21 7.89 -51.93 -0.41 -0.62 16 37 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.11 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.13 0.13 7.42 -51.93 -0.39 -0.25 16 40 H 0.34 -0.26 8.23 -40.82 -0.34 -0.60 16 41 H 0.05 0.00 7.21 -51.93 -0.37 -0.37 16 42 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 43 H 0.05 -0.03 7.83 -51.93 -0.41 -0.44 16 44 H 0.05 -0.08 7.83 -51.93 -0.41 -0.49 16 45 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 46 H 0.05 -0.11 7.22 -51.93 -0.37 -0.48 16 LS Contribution 384.56 15.07 5.80 5.80 Total: 0.00 -7.28 384.56 -7.85 -15.13 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -7.94 Total: -8.59 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 2.40 Total: 3.43 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: 0.21 Total: -1.08 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.61 Total: -9.54 kcal Atomic # 14 Polarization: 1.56 SS G_CDS: -6.70 Total: -5.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -7.28 -7.85 -15.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186976415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.245 kcal (2) G-P(sol) polarization free energy of solvation -7.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds