Wall clock time and date at job start Tue Mar 31 2020 11:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 Si 1.63107 * 113.99866 * 2 1 4 4 C 1.86301 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47212 * 179.97438 * 6 5 4 8 8 C 1.46493 * 119.99899 * 270.00188 * 7 6 5 9 9 C 1.34773 * 119.99455 * 90.00023 * 7 6 5 10 10 O 1.21282 * 120.00692 * 0.02562 * 9 7 6 11 11 C 1.50705 * 119.99759 * 180.02562 * 9 7 6 12 12 H 1.08997 * 115.54906 * 34.27177 * 11 9 7 13 13 C 1.53000 * 117.49837 * 248.60889 * 11 9 7 14 14 C 1.52997 * 60.00033 * 252.50640 * 13 11 9 15 15 C 1.50694 * 117.49989 * 252.50817 * 14 13 11 16 16 N 1.27951 * 119.99841 * 43.62088 * 15 14 13 17 17 Si 1.86795 * 120.00175 * 223.62431 * 15 14 13 18 18 H 1.48493 * 109.47537 * 59.99908 * 17 15 14 19 19 H 1.48503 * 109.47097 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46827 * 299.99767 * 17 15 14 21 21 O 1.63098 * 109.46938 * 60.00012 * 3 2 1 22 22 C 1.42903 * 114.00287 * 60.00082 * 21 3 2 23 23 O 1.63095 * 109.47207 * 300.00108 * 3 2 1 24 24 C 1.42908 * 113.99888 * 299.99765 * 23 3 2 25 25 H 1.09000 * 109.47431 * 299.99868 * 1 2 3 26 26 H 1.09001 * 109.47018 * 60.00119 * 1 2 3 27 27 H 1.09006 * 109.47086 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47148 * 60.00019 * 4 3 2 29 29 H 1.09001 * 109.46900 * 300.00171 * 4 3 2 30 30 H 1.09002 * 109.47103 * 59.99797 * 5 4 3 31 31 H 1.08998 * 109.46862 * 300.00610 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 34 34 H 1.08994 * 109.47405 * 90.00269 * 8 7 6 35 35 H 1.09006 * 109.46911 * 209.99921 * 8 7 6 36 36 H 1.08996 * 109.47170 * 329.99434 * 8 7 6 37 37 H 1.09005 * 117.50055 * 0.02562 * 13 11 9 38 38 H 1.08998 * 117.50115 * 145.01119 * 13 11 9 39 39 H 1.09000 * 117.49741 * 107.48682 * 14 13 11 40 40 H 0.96994 * 119.99843 * 179.97438 * 16 15 14 41 41 H 1.08999 * 109.46975 * 59.99472 * 22 21 3 42 42 H 1.08999 * 109.47290 * 179.97438 * 22 21 3 43 43 H 1.09005 * 109.46833 * 299.99656 * 22 21 3 44 44 H 1.09003 * 109.46825 * 60.00524 * 24 23 3 45 45 H 1.09000 * 109.46769 * 179.97438 * 24 23 3 46 46 H 1.08994 * 109.47007 * 300.00032 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 14 2.0923 1.4901 0.0000 4 6 3.9495 1.3430 0.0008 5 6 4.5718 2.7407 0.0014 6 6 6.0970 2.6199 0.0014 7 7 6.6929 3.9583 0.0014 8 6 6.9907 4.6274 -1.2672 9 6 6.9669 4.5738 1.1687 10 8 6.7207 4.0197 2.2190 11 6 7.5793 5.9508 1.1687 12 1 7.2642 6.6055 0.3562 13 6 9.0211 6.0827 1.6635 14 6 7.8664 6.5963 2.5259 15 6 7.6916 8.0889 2.6374 16 7 7.7918 8.8244 1.5952 17 14 7.3288 8.8654 4.2971 18 1 8.4370 8.5628 5.2381 19 1 7.2016 10.3364 4.1382 20 1 6.0588 8.3144 4.8344 21 8 1.6110 2.2994 1.3317 22 6 1.9843 1.6717 2.5600 23 8 1.6110 2.2995 -1.3316 24 6 1.9844 1.6717 -2.5600 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.2715 0.8019 -0.8890 29 1 4.2708 0.8022 0.8910 30 1 4.2498 3.2814 0.8914 31 1 4.2505 3.2818 -0.8885 32 1 6.4187 2.0794 -0.8888 33 1 6.4186 2.0786 0.8912 34 1 6.1259 5.2114 -1.5819 35 1 7.8476 5.2886 -1.1369 36 1 7.2206 3.8803 -2.0269 37 1 9.5269 5.1735 1.9885 38 1 9.6544 6.8244 1.1767 39 1 7.6123 6.0250 3.4187 40 1 7.6789 9.7851 1.6669 41 1 3.0699 1.5873 2.6097 42 1 1.6281 2.2715 3.3975 43 1 1.5399 0.6776 2.6097 44 1 1.5400 0.6776 -2.6097 45 1 1.6274 2.2711 -3.3975 46 1 3.0699 1.5874 -2.6096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186976415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:30 Heat of formation + Delta-G solvation = -173.736951 kcal Electronic energy + Delta-G solvation = -25471.283366 eV Core-core repulsion = 21713.238540 eV Total energy + Delta-G solvation = -3758.044826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30812 -38.67283 -38.26580 -38.02526 -37.34154 -36.91964 -35.02006 -34.10078 -28.60523 -27.73671 -27.54514 -27.31305 -27.02907 -25.69095 -24.30148 -22.46256 -20.55083 -20.00321 -18.74583 -18.46254 -17.71915 -17.46188 -17.42656 -17.02323 -16.51892 -16.28689 -16.18366 -15.75371 -15.66431 -15.56377 -15.31251 -15.08605 -15.03231 -14.90656 -14.46635 -14.19533 -13.91379 -13.67672 -13.45641 -13.18890 -12.95364 -12.94307 -12.70657 -12.58501 -12.39050 -12.15722 -12.04650 -11.98645 -11.72965 -11.59413 -11.38535 -11.29120 -11.20711 -11.04357 -10.81667 -10.56249 -9.91254 -9.65452 0.69175 0.99499 1.07528 1.40887 1.44474 1.74287 1.88382 1.89769 1.95947 2.06371 2.13073 2.94921 3.35548 3.62808 3.78786 3.93542 3.96920 4.11695 4.19374 4.23914 4.28382 4.34805 4.37799 4.40827 4.43736 4.45600 4.48217 4.51411 4.63926 4.67282 4.72988 4.78835 4.84889 4.86326 4.87379 4.90379 4.91274 4.97750 5.05410 5.09449 5.15390 5.16294 5.34686 5.54921 5.78764 6.30194 6.88174 7.09028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.688 6.688 3 Si 1.649 2.351 4 C -0.524 4.524 5 C -0.112 4.112 6 C 0.115 3.885 7 N -0.614 5.614 8 C 0.070 3.930 9 C 0.534 3.466 10 O -0.579 6.579 11 C -0.170 4.170 12 H 0.141 0.859 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.020 3.980 16 N -0.651 5.651 17 Si 0.988 3.012 18 H -0.239 1.239 19 H -0.251 1.251 20 H -0.254 1.254 21 O -0.689 6.689 22 C 0.049 3.951 23 O -0.685 6.685 24 C 0.045 3.955 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.348 0.652 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -0.598 -3.570 3.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.648 6.648 3 Si 1.686 2.314 4 C -0.600 4.600 5 C -0.151 4.151 6 C -0.007 4.007 7 N -0.346 5.346 8 C -0.072 4.072 9 C 0.324 3.676 10 O -0.460 6.460 11 C -0.192 4.192 12 H 0.159 0.841 13 C -0.145 4.145 14 C -0.136 4.136 15 C -0.227 4.227 16 N -0.265 5.265 17 Si 0.804 3.196 18 H -0.162 1.162 19 H -0.174 1.174 20 H -0.177 1.177 21 O -0.650 6.650 22 C -0.045 4.045 23 O -0.646 6.646 24 C -0.049 4.049 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.761 -0.507 -3.281 3.406 hybrid contribution 0.228 0.290 0.381 0.530 sum 0.989 -0.217 -2.900 3.072 Atomic orbital electron populations 1.22342 0.77321 1.04315 1.01131 1.85555 1.24610 1.64299 1.90384 0.72586 0.61002 0.44831 0.53024 1.27680 1.26833 0.99275 1.06216 1.21262 0.95343 0.96718 1.01788 1.21679 0.92662 0.82909 1.03447 1.47955 1.61497 1.18210 1.06918 1.22091 1.02108 0.98938 0.84062 1.20178 0.77328 0.86948 0.83192 1.90665 1.55116 1.67629 1.32576 1.22245 1.02176 0.94392 1.00338 0.84103 1.23055 0.88544 1.03237 0.99642 1.21601 1.04837 0.91918 0.95227 1.29679 0.92345 0.96674 1.03984 1.68023 1.11261 1.12725 1.34465 0.84969 0.81664 0.78618 0.74348 1.16239 1.17427 1.17748 1.85404 1.82632 1.66934 1.30030 1.22345 0.99877 0.97554 0.84756 1.85430 1.82603 1.66588 1.29994 1.22428 1.00498 0.97478 0.84496 0.93099 0.92762 0.88482 0.88409 0.90054 0.93755 0.90958 0.88079 0.91762 0.91831 0.89527 0.88968 0.87613 0.86069 0.85393 0.83394 0.92846 0.89096 0.91899 0.92368 0.88759 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.01 10.19 113.37 1.16 1.16 16 2 O -0.69 -2.16 8.92 -121.90 -1.09 -3.25 16 3 Si 1.65 5.44 9.84 68.60 0.67 6.12 16 4 C -0.52 -0.73 4.14 71.98 0.30 -0.43 16 5 C -0.11 -0.42 4.91 30.59 0.15 -0.27 16 6 C 0.12 0.32 5.45 86.38 0.47 0.79 16 7 N -0.61 -1.85 2.87 -846.77 -2.43 -4.29 16 8 C 0.07 -0.29 10.05 127.77 1.28 1.00 16 9 C 0.53 4.10 7.46 87.66 0.65 4.75 16 10 O -0.58 -8.74 15.84 -3.04 -0.05 -8.78 16 11 C -0.17 -0.48 4.30 -11.54 -0.05 -0.53 16 12 H 0.14 0.18 6.94 -2.39 -0.02 0.17 16 13 C -0.11 0.00 9.82 30.59 0.30 0.31 16 14 C -0.12 -0.30 5.25 -11.54 -0.06 -0.36 16 15 C 0.02 0.01 5.45 88.67 0.48 0.50 16 16 N -0.65 -0.74 13.03 24.11 0.31 -0.42 16 17 Si 0.99 -1.25 29.58 68.60 2.03 0.78 16 18 H -0.24 0.14 7.11 99.48 0.71 0.85 16 19 H -0.25 0.28 7.11 99.48 0.71 0.98 16 20 H -0.25 -0.43 7.11 99.48 0.71 0.28 16 21 O -0.69 -5.02 8.92 -121.90 -1.09 -6.11 16 22 C 0.05 0.13 10.20 113.37 1.16 1.29 16 23 O -0.69 -3.15 8.92 -121.90 -1.09 -4.24 16 24 C 0.05 -0.09 10.20 113.37 1.16 1.07 16 25 H 0.05 -0.02 7.83 -2.39 -0.02 -0.04 16 26 H 0.05 -0.07 7.83 -2.39 -0.02 -0.08 16 27 H 0.10 -0.30 8.14 -2.38 -0.02 -0.32 16 28 H 0.10 -0.21 7.48 -2.39 -0.02 -0.23 16 29 H 0.08 0.15 7.48 -2.39 -0.02 0.13 16 30 H 0.04 0.40 7.97 -2.39 -0.02 0.38 16 31 H 0.07 0.15 7.96 -2.39 -0.02 0.13 16 32 H 0.10 -0.25 7.89 -2.39 -0.02 -0.27 16 33 H 0.06 0.44 7.42 -2.39 -0.02 0.42 16 34 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.09 -0.49 6.64 -2.38 -0.02 -0.51 16 36 H 0.09 -0.71 7.89 -2.39 -0.02 -0.73 16 37 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 38 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.13 0.47 7.42 -2.39 -0.02 0.45 16 40 H 0.35 -0.65 8.23 -92.71 -0.76 -1.41 16 41 H 0.05 0.09 7.21 -2.39 -0.02 0.07 16 42 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.06 -0.04 7.83 -2.38 -0.02 -0.06 16 44 H 0.06 -0.23 7.83 -2.39 -0.02 -0.25 16 45 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.06 -0.36 7.22 -2.39 -0.02 -0.37 16 Total: 0.00 -17.53 384.56 5.23 -12.30 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: 0.95 Total: -1.39 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 7.00 Total: 9.27 kcal Atomic # 7 Polarization: -2.59 SS G_CDS: -2.12 Total: -4.71 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -3.31 Total: -22.38 kcal Atomic # 14 Polarization: 4.20 SS G_CDS: 2.70 Total: 6.90 kcal Total: -17.53 5.23 -12.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186976415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.433 kcal (2) G-P(sol) polarization free energy of solvation -17.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds