Wall clock time and date at job start Tue Mar 31 2020 11:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21266 * 120.00184 * 2 1 4 4 N 1.34782 * 119.99612 * 180.02562 * 2 1 3 5 5 C 1.38977 * 119.99657 * 185.08761 * 4 2 1 6 6 C 1.39264 * 119.52747 * 174.91105 * 5 4 2 7 7 C 1.36943 * 119.38060 * 180.02562 * 6 5 4 8 8 C 1.40279 * 118.48182 * 0.02562 * 7 6 5 9 9 C 1.47607 * 120.48212 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99995 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00182 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00542 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.40702 * 324.85814 * 12 11 9 14 14 C 1.52959 * 109.41675 * 84.64209 * 12 11 9 15 15 C 1.53222 * 109.40323 * 183.70820 * 14 12 11 16 16 C 1.51264 * 108.53739 * 305.37137 * 15 14 12 17 17 C 1.37877 * 120.85338 * 231.32553 * 16 15 14 18 18 N 1.31512 * 120.00176 * 180.02562 * 17 16 15 19 19 Si 1.86804 * 119.99809 * 0.02686 * 17 16 15 20 20 H 1.48496 * 109.47106 * 89.99877 * 19 17 16 21 21 H 1.48497 * 109.46876 * 209.99609 * 19 17 16 22 22 H 1.48496 * 109.47069 * 329.99608 * 19 17 16 23 23 C 1.51273 * 118.29974 * 51.35602 * 16 15 14 24 24 C 1.52953 * 109.41452 * 205.00318 * 12 11 9 25 25 C 1.39555 * 119.03519 * 359.96433 * 8 7 6 26 26 N 1.31681 * 120.51147 * 0.03750 * 25 8 7 27 27 H 1.09003 * 109.46716 * 269.99917 * 1 2 3 28 28 H 1.08997 * 109.46919 * 29.99628 * 1 2 3 29 29 H 1.09002 * 109.47241 * 149.99456 * 1 2 3 30 30 H 0.96997 * 120.00424 * 5.08819 * 4 2 1 31 31 H 1.07992 * 120.30713 * 359.74895 * 6 5 4 32 32 H 1.07997 * 120.76090 * 179.97438 * 7 6 5 33 33 H 0.97000 * 120.00024 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.48010 * 303.69085 * 14 12 11 35 35 H 1.09005 * 109.47789 * 63.72573 * 14 12 11 36 36 H 1.09002 * 109.62167 * 185.66172 * 15 14 12 37 37 H 1.08996 * 109.62918 * 65.09312 * 15 14 12 38 38 H 0.97000 * 119.99812 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.62316 * 188.93988 * 23 16 15 40 40 H 1.08993 * 109.78932 * 68.45220 * 23 16 15 41 41 H 1.08999 * 109.48008 * 296.26683 * 24 12 11 42 42 H 1.08998 * 109.48650 * 56.29852 * 24 12 11 43 43 H 1.08000 * 119.74791 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5665 -1.1697 0.1062 6 6 4.2446 -2.3815 0.2119 7 6 5.6100 -2.3804 0.3175 8 6 6.2800 -1.1480 0.3157 9 6 7.7509 -1.0952 0.4277 10 8 8.3906 -2.1248 0.5229 11 7 8.3848 0.0941 0.4245 12 6 9.8447 0.1465 0.5351 13 1 10.1872 -0.6539 1.1909 14 6 10.4665 -0.0327 -0.8509 15 6 11.9929 -0.0706 -0.7230 16 6 12.4454 1.1746 0.0068 17 6 13.4385 1.9774 -0.5131 18 7 13.8193 3.0560 0.1358 19 14 14.2430 1.5329 -2.1394 20 1 13.4918 2.1663 -3.2527 21 1 15.6454 2.0214 -2.1476 22 1 14.2316 0.0579 -2.3105 23 6 11.7810 1.5163 1.3222 24 6 10.2621 1.4967 1.1202 25 6 5.5358 0.0275 0.2062 26 7 4.2236 -0.0189 0.1068 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6987 -2.0056 -0.0754 31 1 3.6985 -3.3131 0.2152 32 1 6.1583 -3.3070 0.4010 33 1 7.8745 0.9155 0.3481 34 1 10.1149 -0.9669 -1.2890 35 1 10.1757 0.8009 -1.4902 36 1 12.4428 -0.0971 -1.7155 37 1 12.2912 -0.9543 -0.1591 38 1 14.5178 3.6209 -0.2302 39 1 12.0947 2.5095 1.6436 40 1 12.0592 0.7819 2.0779 41 1 9.9763 2.2941 0.4342 42 1 9.7658 1.6466 2.0789 43 1 6.0399 0.9826 0.2032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189913625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:02 Heat of formation + Delta-G solvation = -36.298533 kcal Electronic energy + Delta-G solvation = -25661.844643 eV Core-core repulsion = 21899.810557 eV Total energy + Delta-G solvation = -3762.034086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22783 -39.85873 -38.75708 -36.71940 -35.28983 -33.80040 -32.73656 -31.90626 -31.09673 -29.70502 -29.46280 -27.15328 -24.38900 -24.20732 -22.24065 -21.50340 -20.89763 -20.34536 -19.55868 -18.62598 -17.73266 -17.35776 -16.20734 -15.98444 -15.96288 -15.16390 -15.08558 -14.78466 -14.48573 -14.40143 -13.95853 -13.92761 -13.34177 -13.13555 -13.09747 -12.91643 -12.72975 -12.64145 -12.25007 -12.05300 -11.67349 -11.09862 -11.00158 -10.80697 -10.72786 -10.60401 -10.18111 -10.16914 -9.97964 -9.89969 -9.61374 -9.28911 -9.00116 -8.86857 -8.63689 -8.45771 -8.29570 -6.09467 -3.99969 0.45809 1.04454 2.19905 2.41642 3.04037 3.28264 3.37490 3.40186 3.46479 3.80924 3.94016 4.37721 4.40064 4.52844 4.64353 4.68662 4.78769 4.88050 4.93716 5.19048 5.25582 5.31132 5.55953 5.73001 5.81480 5.88577 5.95730 6.20646 6.35164 6.47005 6.49495 6.69736 6.72599 6.76726 6.90454 6.97539 7.10772 7.24216 7.45178 7.55859 7.66042 7.72246 7.76366 7.87142 7.91210 8.39060 8.49045 8.97264 9.55784 11.00061 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.002481 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.579155 B =11285.101793 C =11673.087389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.497 3.503 3 O -0.471 6.471 4 N -0.662 5.662 5 C 0.373 3.627 6 C -0.214 4.214 7 C 0.008 3.992 8 C -0.212 4.212 9 C 0.560 3.440 10 O -0.541 6.541 11 N -0.717 5.717 12 C 0.154 3.846 13 H 0.080 0.920 14 C -0.114 4.114 15 C -0.013 4.013 16 C -0.489 4.489 17 C 0.076 3.924 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.013 3.987 24 C -0.115 4.115 25 C 0.168 3.832 26 N -0.481 5.481 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.418 0.582 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.393 0.607 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.061 0.939 40 H 0.006 0.994 41 H 0.055 0.945 42 H 0.036 0.964 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.534 -9.510 -0.106 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.283 3.717 3 O -0.339 6.339 4 N -0.309 5.309 5 C 0.141 3.859 6 C -0.237 4.237 7 C -0.018 4.018 8 C -0.218 4.218 9 C 0.346 3.654 10 O -0.420 6.420 11 N -0.367 5.367 12 C 0.052 3.948 13 H 0.098 0.902 14 C -0.153 4.153 15 C -0.051 4.051 16 C -0.508 4.508 17 C -0.127 4.127 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.192 1.192 23 C -0.025 4.025 24 C -0.154 4.154 25 C 0.009 3.991 26 N -0.195 5.195 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.255 0.745 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.228 0.772 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.081 -8.460 -0.095 27.419 hybrid contribution 0.331 -0.973 -0.960 1.406 sum -25.751 -9.433 -1.054 27.444 Atomic orbital electron populations 1.21910 0.90568 1.05311 1.05173 1.21162 0.90774 0.83337 0.76383 1.90872 1.69946 1.30316 1.42741 1.43730 1.04047 1.11061 1.72072 1.18687 0.84787 0.90060 0.92341 1.21175 0.95220 0.97451 1.09876 1.21232 0.92962 0.98345 0.89273 1.21096 0.95310 0.95269 1.10157 1.17907 0.86163 0.84345 0.77020 1.90770 1.67447 1.33446 1.50293 1.46370 1.09575 1.07445 1.73280 1.21102 0.75722 0.99753 0.98219 0.90186 1.21921 0.99014 0.99112 0.95264 1.19715 0.91095 0.97403 0.96920 1.20043 1.18687 1.06684 1.05354 1.24840 0.96083 0.94524 0.97227 1.69831 1.29863 1.14230 1.38842 0.86658 0.78529 0.79021 0.84166 1.20449 1.21661 1.19163 1.19335 0.88420 0.99127 0.95593 1.21946 1.01153 0.94377 0.97896 1.22961 0.88311 0.97777 0.90081 1.67737 1.09266 1.26377 1.16105 0.88440 0.88367 0.89981 0.74452 0.84091 0.83135 0.77248 0.94417 0.92971 0.95069 0.96205 0.92597 0.92056 0.97532 0.92606 0.94486 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.50 4.29 7.90 -10.98 -0.09 4.20 16 3 O -0.47 -6.61 15.34 5.57 0.09 -6.53 16 4 N -0.66 -4.65 5.37 -11.44 -0.06 -4.71 16 5 C 0.37 3.91 7.41 -154.89 -1.15 2.76 16 6 C -0.21 -1.85 9.86 -39.67 -0.39 -2.24 16 7 C 0.01 0.09 9.65 -39.28 -0.38 -0.29 16 8 C -0.21 -2.80 5.89 -104.82 -0.62 -3.42 16 9 C 0.56 9.19 7.73 -12.44 -0.10 9.10 16 10 O -0.54 -10.72 16.07 5.29 0.09 -10.63 16 11 N -0.72 -11.56 5.03 -54.87 -0.28 -11.83 16 12 C 0.15 3.04 2.35 -67.97 -0.16 2.88 16 13 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 14 C -0.11 -2.42 5.50 -26.64 -0.15 -2.56 16 15 C -0.01 -0.32 5.59 -27.49 -0.15 -0.47 16 16 C -0.49 -12.85 5.51 -98.92 -0.55 -13.40 16 17 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 18 N -0.89 -25.49 12.73 55.43 0.71 -24.78 16 19 Si 0.89 21.30 27.27 -169.99 -4.64 16.67 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.26 6.46 56.52 0.37 -5.90 16 23 C 0.01 0.32 5.97 -27.48 -0.16 0.16 16 24 C -0.12 -2.35 5.40 -26.63 -0.14 -2.49 16 25 C 0.17 2.12 10.71 -17.13 -0.18 1.94 16 26 N -0.48 -6.46 7.85 -12.06 -0.09 -6.56 16 27 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.42 1.02 8.69 -40.82 -0.35 0.67 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.15 1.58 7.73 -52.49 -0.41 1.17 16 33 H 0.39 5.24 6.65 -40.82 -0.27 4.97 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.16 1.77 6.41 -52.49 -0.34 1.44 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -35.60 354.15 -8.57 -44.17 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.78 Total: 0.96 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -3.94 Total: -2.09 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.27 Total: -47.89 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.17 Total: -17.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.64 Total: 16.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.60 -8.57 -44.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189913625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.871 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds