Wall clock time and date at job start Tue Mar 31 2020 11:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21266 * 120.00184 * 2 1 4 4 N 1.34782 * 119.99612 * 180.02562 * 2 1 3 5 5 C 1.38977 * 119.99657 * 185.08761 * 4 2 1 6 6 C 1.39264 * 119.52747 * 174.91105 * 5 4 2 7 7 C 1.36943 * 119.38060 * 180.02562 * 6 5 4 8 8 C 1.40279 * 118.48182 * 0.02562 * 7 6 5 9 9 C 1.47607 * 120.48212 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99995 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00182 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00542 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.40702 * 324.85814 * 12 11 9 14 14 C 1.52959 * 109.41675 * 84.64209 * 12 11 9 15 15 C 1.53222 * 109.40323 * 183.70820 * 14 12 11 16 16 C 1.51264 * 108.53739 * 305.37137 * 15 14 12 17 17 C 1.37877 * 120.85338 * 231.32553 * 16 15 14 18 18 N 1.31512 * 120.00176 * 180.02562 * 17 16 15 19 19 Si 1.86804 * 119.99809 * 0.02686 * 17 16 15 20 20 H 1.48496 * 109.47106 * 89.99877 * 19 17 16 21 21 H 1.48497 * 109.46876 * 209.99609 * 19 17 16 22 22 H 1.48496 * 109.47069 * 329.99608 * 19 17 16 23 23 C 1.51273 * 118.29974 * 51.35602 * 16 15 14 24 24 C 1.52953 * 109.41452 * 205.00318 * 12 11 9 25 25 C 1.39555 * 119.03519 * 359.96433 * 8 7 6 26 26 N 1.31681 * 120.51147 * 0.03750 * 25 8 7 27 27 H 1.09003 * 109.46716 * 269.99917 * 1 2 3 28 28 H 1.08997 * 109.46919 * 29.99628 * 1 2 3 29 29 H 1.09002 * 109.47241 * 149.99456 * 1 2 3 30 30 H 0.96997 * 120.00424 * 5.08819 * 4 2 1 31 31 H 1.07992 * 120.30713 * 359.74895 * 6 5 4 32 32 H 1.07997 * 120.76090 * 179.97438 * 7 6 5 33 33 H 0.97000 * 120.00024 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.48010 * 303.69085 * 14 12 11 35 35 H 1.09005 * 109.47789 * 63.72573 * 14 12 11 36 36 H 1.09002 * 109.62167 * 185.66172 * 15 14 12 37 37 H 1.08996 * 109.62918 * 65.09312 * 15 14 12 38 38 H 0.97000 * 119.99812 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.62316 * 188.93988 * 23 16 15 40 40 H 1.08993 * 109.78932 * 68.45220 * 23 16 15 41 41 H 1.08999 * 109.48008 * 296.26683 * 24 12 11 42 42 H 1.08998 * 109.48650 * 56.29852 * 24 12 11 43 43 H 1.08000 * 119.74791 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5665 -1.1697 0.1062 6 6 4.2446 -2.3815 0.2119 7 6 5.6100 -2.3804 0.3175 8 6 6.2800 -1.1480 0.3157 9 6 7.7509 -1.0952 0.4277 10 8 8.3906 -2.1248 0.5229 11 7 8.3848 0.0941 0.4245 12 6 9.8447 0.1465 0.5351 13 1 10.1872 -0.6539 1.1909 14 6 10.4665 -0.0327 -0.8509 15 6 11.9929 -0.0706 -0.7230 16 6 12.4454 1.1746 0.0068 17 6 13.4385 1.9774 -0.5131 18 7 13.8193 3.0560 0.1358 19 14 14.2430 1.5329 -2.1394 20 1 13.4918 2.1663 -3.2527 21 1 15.6454 2.0214 -2.1476 22 1 14.2316 0.0579 -2.3105 23 6 11.7810 1.5163 1.3222 24 6 10.2621 1.4967 1.1202 25 6 5.5358 0.0275 0.2062 26 7 4.2236 -0.0189 0.1068 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6987 -2.0056 -0.0754 31 1 3.6985 -3.3131 0.2152 32 1 6.1583 -3.3070 0.4010 33 1 7.8745 0.9155 0.3481 34 1 10.1149 -0.9669 -1.2890 35 1 10.1757 0.8009 -1.4902 36 1 12.4428 -0.0971 -1.7155 37 1 12.2912 -0.9543 -0.1591 38 1 14.5178 3.6209 -0.2302 39 1 12.0947 2.5095 1.6436 40 1 12.0592 0.7819 2.0779 41 1 9.9763 2.2941 0.4342 42 1 9.7658 1.6466 2.0789 43 1 6.0399 0.9826 0.2032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189913625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:01 Heat of formation + Delta-G solvation = -61.393933 kcal Electronic energy + Delta-G solvation = -25662.932861 eV Core-core repulsion = 21899.810557 eV Total energy + Delta-G solvation = -3763.122304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.06592 -40.95369 -39.79659 -38.37912 -36.08803 -35.44000 -33.61735 -33.56828 -32.01556 -31.48555 -30.24654 -28.80249 -25.44231 -25.05650 -23.88806 -23.31418 -21.70215 -21.57671 -21.26969 -19.37684 -18.95916 -18.18882 -17.82361 -17.24803 -16.67407 -16.41933 -16.31996 -15.99880 -15.95652 -15.46107 -15.05890 -14.85430 -14.74110 -14.51288 -14.23753 -14.08951 -13.91569 -13.90024 -13.47921 -13.29687 -13.05452 -12.79792 -12.70317 -12.56770 -11.93572 -11.89741 -11.82588 -11.52127 -11.41480 -11.21287 -11.02097 -10.85896 -10.68558 -10.54383 -10.17553 -9.97066 -9.40698 -8.17524 -6.11495 -0.44917 0.22324 1.37654 1.41486 1.47971 1.50104 1.83775 1.97112 2.16755 2.40763 2.86275 3.10799 3.21022 3.66771 3.79188 3.83650 3.92465 4.05335 4.08631 4.19790 4.48459 4.50756 4.54712 4.68191 4.70234 4.76513 4.83584 4.95958 5.03125 5.06590 5.06858 5.14004 5.17434 5.22249 5.23000 5.55144 5.56501 5.60684 5.67219 5.75584 5.81945 6.14558 6.34555 6.56444 6.81662 6.94011 7.20465 7.25862 7.46624 8.93085 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.002481 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.579155 B =11285.101793 C =11673.087389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.491 3.509 3 O -0.533 6.533 4 N -0.645 5.645 5 C 0.366 3.634 6 C -0.191 4.191 7 C 0.002 3.998 8 C -0.227 4.227 9 C 0.563 3.437 10 O -0.579 6.579 11 N -0.710 5.710 12 C 0.167 3.833 13 H 0.061 0.939 14 C -0.107 4.107 15 C -0.015 4.015 16 C -0.499 4.499 17 C 0.025 3.975 18 N -0.928 5.928 19 Si 0.939 3.061 20 H -0.272 1.272 21 H -0.291 1.291 22 H -0.258 1.258 23 C 0.008 3.992 24 C -0.103 4.103 25 C 0.166 3.834 26 N -0.515 5.515 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.442 0.558 31 H 0.189 0.811 32 H 0.156 0.844 33 H 0.408 0.592 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.034 0.966 40 H -0.002 1.002 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.874 -11.419 -0.927 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.281 3.719 3 O -0.406 6.406 4 N -0.294 5.294 5 C 0.133 3.867 6 C -0.214 4.214 7 C -0.024 4.024 8 C -0.234 4.234 9 C 0.351 3.649 10 O -0.460 6.460 11 N -0.360 5.360 12 C 0.063 3.937 13 H 0.079 0.921 14 C -0.146 4.146 15 C -0.053 4.053 16 C -0.518 4.518 17 C -0.174 4.174 18 N -0.567 5.567 19 Si 0.765 3.235 20 H -0.198 1.198 21 H -0.217 1.217 22 H -0.183 1.183 23 C -0.029 4.029 24 C -0.141 4.141 25 C 0.007 3.993 26 N -0.230 5.230 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.284 0.716 31 H 0.206 0.794 32 H 0.174 0.826 33 H 0.245 0.755 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -29.491 -10.411 -0.923 31.289 hybrid contribution 1.237 -0.444 -0.641 1.463 sum -28.254 -10.855 -1.564 30.308 Atomic orbital electron populations 1.21941 0.86292 1.06912 1.06669 1.22174 0.92724 0.82606 0.74443 1.90852 1.71518 1.32543 1.45670 1.43759 1.02785 1.12150 1.70691 1.19134 0.86239 0.89996 0.91336 1.21522 0.94192 0.98564 1.07102 1.21427 0.94140 0.97676 0.89185 1.20832 0.93078 0.96666 1.12827 1.18331 0.87451 0.83473 0.75678 1.90745 1.68574 1.34602 1.52111 1.46095 1.08082 1.08504 1.73334 1.20677 0.77810 0.98378 0.96841 0.92129 1.21800 0.97073 0.99462 0.96256 1.19718 0.93107 0.95971 0.96528 1.20580 1.18274 1.07159 1.05827 1.25564 0.96883 0.94712 1.00232 1.69953 1.30842 1.15477 1.40456 0.85830 0.77597 0.79148 0.80888 1.19751 1.21745 1.18297 1.19298 0.91478 0.97215 0.94955 1.21720 0.98159 0.94934 0.99276 1.23016 0.88385 0.97911 0.90017 1.67757 1.09486 1.28338 1.17430 0.86774 0.88800 0.86352 0.71624 0.79429 0.82626 0.75480 0.93965 0.92599 0.94900 0.96748 0.92732 0.94734 0.98313 0.92418 0.92244 0.81294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 10.31 71.24 0.73 0.16 16 2 C 0.49 7.43 7.90 87.66 0.69 8.12 16 3 O -0.53 -14.78 15.34 -2.99 -0.05 -14.82 16 4 N -0.64 -7.00 5.37 -308.50 -1.66 -8.66 16 5 C 0.37 6.75 7.41 133.07 0.99 7.74 16 6 C -0.19 -2.64 9.86 22.21 0.22 -2.42 16 7 C 0.00 0.04 9.65 22.46 0.22 0.26 16 8 C -0.23 -5.79 5.89 -19.99 -0.12 -5.90 16 9 C 0.56 18.18 7.73 86.72 0.67 18.86 16 10 O -0.58 -22.86 16.07 -3.98 -0.06 -22.92 16 11 N -0.71 -22.39 5.03 -445.77 -2.24 -24.63 16 12 C 0.17 6.50 2.35 44.96 0.11 6.61 16 13 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 14 C -0.11 -4.46 5.50 30.66 0.17 -4.29 16 15 C -0.02 -0.72 5.59 30.10 0.17 -0.55 16 16 C -0.50 -26.57 5.51 -16.17 -0.09 -26.66 16 17 C 0.02 1.36 5.46 84.65 0.46 1.82 16 18 N -0.93 -54.44 12.73 21.45 0.27 -54.16 16 19 Si 0.94 43.89 27.27 68.60 1.87 45.76 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.26 -11.61 6.46 99.48 0.64 -10.97 16 23 C 0.01 0.43 5.97 30.11 0.18 0.61 16 24 C -0.10 -4.16 5.40 30.66 0.17 -3.99 16 25 C 0.17 4.08 10.71 85.03 0.91 4.99 16 26 N -0.52 -13.35 7.85 -192.08 -1.51 -14.86 16 27 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.12 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.44 0.13 8.69 -92.71 -0.81 -0.67 16 31 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 32 H 0.16 2.96 7.73 -2.91 -0.02 2.94 16 33 H 0.41 10.49 6.65 -92.71 -0.62 9.87 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.03 1.53 4.78 -2.39 -0.01 1.52 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 39 H 0.03 1.90 7.07 -2.39 -0.02 1.88 16 40 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.17 3.64 6.41 -2.91 -0.02 3.62 16 Total: -1.00 -80.56 354.15 1.68 -78.88 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -0.42 Total: 10.08 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.47 Total: 5.34 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -5.13 Total: -102.31 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.11 Total: -37.74 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.87 Total: 45.76 kcal Total: -80.56 1.68 -78.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189913625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.485 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds