Wall clock time and date at job start Tue Mar 31 2020 11:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 109.47062 * 2 1 4 4 C 1.46901 * 109.47403 * 119.99523 * 2 1 3 5 5 C 1.46894 * 109.47615 * 239.99773 * 2 1 3 6 6 C 1.53002 * 109.46992 * 63.53903 * 5 2 1 7 7 H 1.09001 * 109.46919 * 52.40827 * 6 5 2 8 8 C 1.50694 * 109.47379 * 172.40949 * 6 5 2 9 9 H 1.08003 * 120.00581 * 238.79823 * 8 6 5 10 10 C 1.37875 * 120.00150 * 58.79560 * 8 6 5 11 11 N 1.31516 * 119.99746 * 6.78929 * 10 8 6 12 12 Si 1.86803 * 120.00381 * 186.79178 * 10 8 6 13 13 H 1.48509 * 109.46952 * 94.99431 * 12 10 8 14 14 H 1.48491 * 109.47459 * 214.99426 * 12 10 8 15 15 H 1.48498 * 109.47104 * 334.99774 * 12 10 8 16 16 O 1.42899 * 109.46887 * 292.40921 * 6 5 2 17 17 C 1.35747 * 116.99822 * 156.13757 * 16 6 5 18 18 C 1.39436 * 120.81390 * 184.81730 * 17 16 6 19 19 C 1.37827 * 119.21954 * 179.97438 * 18 17 16 20 20 N 1.32052 * 120.89225 * 359.97438 * 19 18 17 21 21 C 1.32346 * 121.78350 * 0.02562 * 20 19 18 22 22 O 1.35679 * 119.65480 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00021 * 0.02562 * 22 21 20 24 24 F 1.39905 * 109.47196 * 299.99489 * 23 22 21 25 25 F 1.39892 * 109.47573 * 59.99906 * 23 22 21 26 26 C 1.38686 * 120.68603 * 359.74529 * 21 20 19 27 27 H 1.08998 * 109.46747 * 49.98382 * 1 2 3 28 28 H 1.09001 * 109.46577 * 169.98061 * 1 2 3 29 29 H 1.08995 * 109.47087 * 289.98025 * 1 2 3 30 30 H 1.08999 * 109.46755 * 59.99492 * 3 2 1 31 31 H 1.09001 * 109.47152 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.46779 * 299.99970 * 3 2 1 33 33 H 1.09000 * 109.46538 * 60.00183 * 4 2 1 34 34 H 1.08991 * 109.47674 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47139 * 300.00953 * 4 2 1 36 36 H 1.09004 * 109.47418 * 183.53289 * 5 2 1 37 37 H 1.08998 * 109.47697 * 303.53835 * 5 2 1 38 38 H 0.97006 * 119.99737 * 180.02562 * 11 10 8 39 39 H 1.08004 * 120.39462 * 359.97438 * 18 17 16 40 40 H 1.07995 * 119.55723 * 179.97438 * 19 18 17 41 41 H 1.09009 * 109.47011 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.47444 * 180.25893 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3851 0.0000 4 6 1.9587 -0.6924 1.1995 5 6 1.9588 -0.6925 -1.1993 6 6 1.5228 0.0783 -2.4470 7 1 1.8217 1.1222 -2.3521 8 6 2.1779 -0.5232 -3.6636 9 1 2.8131 0.0846 -4.2910 10 6 1.9666 -1.8494 -3.9757 11 7 1.0912 -2.5542 -3.2926 12 14 2.9235 -2.6452 -5.3687 13 1 4.1195 -3.3324 -4.8183 14 1 2.0593 -3.6344 -6.0612 15 1 3.3528 -1.6015 -6.3338 16 8 0.1025 0.0000 -2.5832 17 6 -0.5038 0.9853 -3.2934 18 6 -1.8934 1.0429 -3.3924 19 6 -2.4744 2.0580 -4.1216 20 7 -1.7335 2.9707 -4.7230 21 6 -0.4120 2.9519 -4.6539 22 8 0.3072 3.9118 -5.2883 23 6 -0.4278 4.9046 -6.0066 24 9 -1.1933 4.2886 -7.0026 25 9 -1.2722 5.5883 -5.1255 26 6 0.2452 1.9647 -3.9349 27 1 -0.3633 0.6608 -0.7871 28 1 -0.3632 -1.0120 -0.1788 29 1 -0.3633 0.3511 0.9658 30 1 1.5952 1.8988 0.8899 31 1 3.0487 1.3851 0.0005 32 1 1.5953 1.8988 -0.8899 33 1 1.5954 -1.7201 1.1995 34 1 3.0486 -0.6920 1.1998 35 1 1.5953 -0.1786 2.0894 36 1 3.0470 -0.7476 -1.1682 37 1 1.5447 -1.7002 -1.2317 38 1 0.9428 -3.4874 -3.5119 39 1 -2.5073 0.3009 -2.9035 40 1 -3.5502 2.1076 -4.2023 41 1 0.2660 5.6090 -6.4657 42 1 1.3237 1.9551 -3.8773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229086673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:47 Heat of formation + Delta-G solvation = -34.991525 kcal Electronic energy + Delta-G solvation = -28491.609850 eV Core-core repulsion = 24227.173082 eV Total energy + Delta-G solvation = -4264.436768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.76978 -47.89245 -43.49258 -41.42262 -39.56879 -38.10292 -34.89563 -32.39047 -31.73789 -31.12941 -30.48389 -30.32754 -27.98000 -27.02846 -25.32649 -24.55977 -23.49413 -22.53538 -20.35011 -19.22811 -19.07546 -18.74112 -18.56640 -18.51148 -18.15519 -17.55419 -16.99221 -16.40691 -16.24228 -16.03072 -15.86865 -15.31052 -15.18670 -14.91111 -14.79968 -14.59975 -14.50093 -14.25096 -14.21365 -14.18030 -14.05270 -13.87149 -13.69344 -13.56296 -13.39942 -13.10135 -12.94212 -12.80922 -12.35915 -12.23859 -11.88637 -11.32182 -11.06473 -10.46903 -10.25893 -9.60564 -9.36720 -7.88315 -6.10999 0.18806 0.36332 0.65041 1.66423 2.00945 2.11660 2.19835 2.21288 2.21921 2.26140 2.50807 2.78667 2.92608 3.00746 3.05353 3.10343 3.30447 3.38634 3.44125 3.52822 3.55752 3.63926 3.66618 3.69410 3.74095 3.98127 3.98701 4.05345 4.09768 4.16348 4.29205 4.34961 4.47025 4.78197 4.87025 5.03669 5.24960 5.52960 5.95642 6.09906 6.14985 6.62214 7.07721 7.08891 7.74341 9.13765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.274 5.274 3 C -0.048 4.048 4 C -0.040 4.040 5 C 0.001 3.999 6 C 0.188 3.812 7 H 0.051 0.949 8 C -0.568 4.568 9 H 0.081 0.919 10 C 0.091 3.909 11 N -0.855 5.855 12 Si 0.902 3.098 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.265 1.265 16 O -0.293 6.293 17 C 0.223 3.777 18 C -0.243 4.243 19 C 0.168 3.832 20 N -0.555 5.555 21 C 0.335 3.665 22 O -0.320 6.320 23 C 0.426 3.574 24 F -0.192 7.192 25 F -0.195 7.195 26 C -0.262 4.262 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.155 0.845 38 H 0.280 0.720 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.176 0.824 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 4.733 16.513 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.068 4.932 3 C -0.190 4.190 4 C -0.182 4.182 5 C -0.117 4.117 6 C 0.134 3.866 7 H 0.068 0.932 8 C -0.605 4.605 9 H 0.099 0.901 10 C -0.120 4.120 11 N -0.488 5.488 12 Si 0.728 3.272 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.189 1.189 16 O -0.204 6.204 17 C 0.168 3.832 18 C -0.265 4.265 19 C 0.014 3.986 20 N -0.281 5.281 21 C 0.158 3.842 22 O -0.232 6.232 23 C 0.336 3.664 24 F -0.174 7.174 25 F -0.176 7.176 26 C -0.284 4.284 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.173 0.827 38 H 0.090 0.910 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.192 0.808 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.975 5.028 16.180 17.058 hybrid contribution 0.690 -1.125 -0.628 1.461 sum 2.665 3.904 15.552 16.254 Atomic orbital electron populations 1.24272 0.76326 1.10324 1.07194 1.46386 1.15675 1.14864 1.16304 1.24095 1.05162 0.81358 1.08364 1.24013 1.04998 1.01988 0.87204 1.24769 1.03523 1.03109 0.80302 1.20467 0.77792 0.94919 0.93424 0.93153 1.21225 1.32523 0.96493 1.10213 0.90066 1.25067 0.93241 0.97035 0.96661 1.69737 1.29124 1.10099 1.39836 0.86320 0.79814 0.79712 0.81359 1.19616 1.20133 1.18934 1.86313 1.25175 1.43620 1.65294 1.18839 0.91381 0.84876 0.88113 1.21400 0.92566 1.03806 1.08698 1.22148 0.99492 0.87651 0.89321 1.67382 1.04692 1.30008 1.26057 1.19339 0.87732 0.87271 0.89873 1.86787 1.35835 1.37008 1.63565 1.23096 0.82919 0.83295 0.77122 1.93116 1.78544 1.84239 1.61469 1.93093 1.74542 1.79481 1.70525 1.21087 1.02285 0.97814 1.07177 0.85592 0.85893 0.87974 0.86979 0.86427 0.86390 0.86442 0.86738 0.87094 0.85509 0.82713 0.91030 0.84086 0.81927 0.80794 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.38 7.11 60.06 0.43 0.81 16 2 N -0.27 2.90 0.05 -395.63 -0.02 2.88 16 3 C -0.05 0.56 7.57 60.07 0.45 1.02 16 4 C -0.04 0.53 8.00 60.07 0.48 1.01 16 5 C 0.00 -0.01 3.48 -3.83 -0.01 -0.02 16 6 C 0.19 0.00 1.39 -27.88 -0.04 -0.04 16 7 H 0.05 -0.11 4.06 -51.93 -0.21 -0.32 16 8 C -0.57 -3.39 8.00 -34.44 -0.28 -3.67 16 9 H 0.08 0.60 7.82 -52.48 -0.41 0.19 16 10 C 0.09 0.73 5.20 -17.82 -0.09 0.64 16 11 N -0.85 -6.83 11.08 55.43 0.61 -6.22 16 12 Si 0.90 7.69 29.54 -169.99 -5.02 2.66 16 13 H -0.27 -2.30 7.11 56.52 0.40 -1.90 16 14 H -0.28 -2.79 7.11 56.52 0.40 -2.39 16 15 H -0.27 -2.54 7.11 56.52 0.40 -2.14 16 16 O -0.29 -0.40 6.17 -18.95 -0.12 -0.51 16 17 C 0.22 0.58 6.11 -38.86 -0.24 0.35 16 18 C -0.24 -0.47 10.07 -39.29 -0.40 -0.86 16 19 C 0.17 0.47 11.17 -17.61 -0.20 0.27 16 20 N -0.56 -2.93 8.07 -13.40 -0.11 -3.04 16 21 C 0.33 1.66 7.18 -17.16 -0.12 1.53 16 22 O -0.32 -1.24 10.41 -18.74 -0.20 -1.43 16 23 C 0.43 0.89 6.05 101.05 0.61 1.50 16 24 F -0.19 -0.95 16.57 2.25 0.04 -0.92 16 25 F -0.19 -0.73 16.57 2.25 0.04 -0.70 16 26 C -0.26 -0.93 8.70 -39.14 -0.34 -1.27 16 27 H 0.13 -0.90 5.29 -51.93 -0.27 -1.18 16 28 H 0.12 -0.99 7.94 -51.93 -0.41 -1.41 16 29 H 0.10 -1.27 7.99 -51.93 -0.41 -1.69 16 30 H 0.11 -1.56 8.14 -51.93 -0.42 -1.98 16 31 H 0.12 -1.50 8.14 -51.93 -0.42 -1.92 16 32 H 0.12 -1.14 5.85 -51.93 -0.30 -1.45 16 33 H 0.12 -1.48 8.14 -51.93 -0.42 -1.90 16 34 H 0.11 -1.58 8.13 -51.93 -0.42 -2.00 16 35 H 0.11 -1.66 8.07 -51.93 -0.42 -2.08 16 36 H 0.13 -0.75 8.10 -51.93 -0.42 -1.17 16 37 H 0.16 -0.33 6.33 -51.93 -0.33 -0.65 16 38 H 0.28 2.43 8.31 -40.82 -0.34 2.09 16 39 H 0.14 0.01 8.06 -52.48 -0.42 -0.42 16 40 H 0.16 0.01 8.06 -52.49 -0.42 -0.41 16 41 H 0.18 -0.55 8.14 -51.92 -0.42 -0.97 16 42 H 0.15 0.45 5.84 -52.48 -0.31 0.14 16 LS Contribution 342.21 15.07 5.16 5.16 Total: 0.00 -19.46 342.21 -4.95 -24.41 By element: Atomic # 1 Polarization: -17.96 SS G_CDS: -5.60 Total: -23.56 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.26 Total: 1.27 kcal Atomic # 7 Polarization: -6.86 SS G_CDS: 0.49 Total: -6.37 kcal Atomic # 8 Polarization: -1.64 SS G_CDS: -0.31 Total: -1.95 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.07 Total: -1.61 kcal Atomic # 14 Polarization: 7.69 SS G_CDS: -5.02 Total: 2.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -19.46 -4.95 -24.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229086673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.584 kcal (2) G-P(sol) polarization free energy of solvation -19.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds