Wall clock time and date at job start Tue Mar 31 2020 11:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 109.47062 * 2 1 4 4 C 1.46901 * 109.47403 * 119.99523 * 2 1 3 5 5 C 1.46894 * 109.47615 * 239.99773 * 2 1 3 6 6 C 1.53002 * 109.46992 * 63.53903 * 5 2 1 7 7 H 1.09001 * 109.46919 * 52.40827 * 6 5 2 8 8 C 1.50694 * 109.47379 * 172.40949 * 6 5 2 9 9 H 1.08003 * 120.00581 * 238.79823 * 8 6 5 10 10 C 1.37875 * 120.00150 * 58.79560 * 8 6 5 11 11 N 1.31516 * 119.99746 * 6.78929 * 10 8 6 12 12 Si 1.86803 * 120.00381 * 186.79178 * 10 8 6 13 13 H 1.48509 * 109.46952 * 94.99431 * 12 10 8 14 14 H 1.48491 * 109.47459 * 214.99426 * 12 10 8 15 15 H 1.48498 * 109.47104 * 334.99774 * 12 10 8 16 16 O 1.42899 * 109.46887 * 292.40921 * 6 5 2 17 17 C 1.35747 * 116.99822 * 156.13757 * 16 6 5 18 18 C 1.39436 * 120.81390 * 184.81730 * 17 16 6 19 19 C 1.37827 * 119.21954 * 179.97438 * 18 17 16 20 20 N 1.32052 * 120.89225 * 359.97438 * 19 18 17 21 21 C 1.32346 * 121.78350 * 0.02562 * 20 19 18 22 22 O 1.35679 * 119.65480 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00021 * 0.02562 * 22 21 20 24 24 F 1.39905 * 109.47196 * 299.99489 * 23 22 21 25 25 F 1.39892 * 109.47573 * 59.99906 * 23 22 21 26 26 C 1.38686 * 120.68603 * 359.74529 * 21 20 19 27 27 H 1.08998 * 109.46747 * 49.98382 * 1 2 3 28 28 H 1.09001 * 109.46577 * 169.98061 * 1 2 3 29 29 H 1.08995 * 109.47087 * 289.98025 * 1 2 3 30 30 H 1.08999 * 109.46755 * 59.99492 * 3 2 1 31 31 H 1.09001 * 109.47152 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.46779 * 299.99970 * 3 2 1 33 33 H 1.09000 * 109.46538 * 60.00183 * 4 2 1 34 34 H 1.08991 * 109.47674 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47139 * 300.00953 * 4 2 1 36 36 H 1.09004 * 109.47418 * 183.53289 * 5 2 1 37 37 H 1.08998 * 109.47697 * 303.53835 * 5 2 1 38 38 H 0.97006 * 119.99737 * 180.02562 * 11 10 8 39 39 H 1.08004 * 120.39462 * 359.97438 * 18 17 16 40 40 H 1.07995 * 119.55723 * 179.97438 * 19 18 17 41 41 H 1.09009 * 109.47011 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.47444 * 180.25893 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3851 0.0000 4 6 1.9587 -0.6924 1.1995 5 6 1.9588 -0.6925 -1.1993 6 6 1.5228 0.0783 -2.4470 7 1 1.8217 1.1222 -2.3521 8 6 2.1779 -0.5232 -3.6636 9 1 2.8131 0.0846 -4.2910 10 6 1.9666 -1.8494 -3.9757 11 7 1.0912 -2.5542 -3.2926 12 14 2.9235 -2.6452 -5.3687 13 1 4.1195 -3.3324 -4.8183 14 1 2.0593 -3.6344 -6.0612 15 1 3.3528 -1.6015 -6.3338 16 8 0.1025 0.0000 -2.5832 17 6 -0.5038 0.9853 -3.2934 18 6 -1.8934 1.0429 -3.3924 19 6 -2.4744 2.0580 -4.1216 20 7 -1.7335 2.9707 -4.7230 21 6 -0.4120 2.9519 -4.6539 22 8 0.3072 3.9118 -5.2883 23 6 -0.4278 4.9046 -6.0066 24 9 -1.1933 4.2886 -7.0026 25 9 -1.2722 5.5883 -5.1255 26 6 0.2452 1.9647 -3.9349 27 1 -0.3633 0.6608 -0.7871 28 1 -0.3632 -1.0120 -0.1788 29 1 -0.3633 0.3511 0.9658 30 1 1.5952 1.8988 0.8899 31 1 3.0487 1.3851 0.0005 32 1 1.5953 1.8988 -0.8899 33 1 1.5954 -1.7201 1.1995 34 1 3.0486 -0.6920 1.1998 35 1 1.5953 -0.1786 2.0894 36 1 3.0470 -0.7476 -1.1682 37 1 1.5447 -1.7002 -1.2317 38 1 0.9428 -3.4874 -3.5119 39 1 -2.5073 0.3009 -2.9035 40 1 -3.5502 2.1076 -4.2023 41 1 0.2660 5.6090 -6.4657 42 1 1.3237 1.9551 -3.8773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229086673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:46 Heat of formation + Delta-G solvation = -43.031873 kcal Electronic energy + Delta-G solvation = -28491.958506 eV Core-core repulsion = 24227.173082 eV Total energy + Delta-G solvation = -4264.785424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.00175 -48.14432 -42.85437 -41.56949 -39.68523 -38.27868 -35.27584 -32.55571 -31.92172 -31.14296 -29.57080 -29.46735 -27.94819 -27.18143 -25.36494 -24.34044 -23.63916 -22.42615 -20.56454 -19.32448 -18.98957 -18.80185 -18.52218 -17.92897 -17.64630 -17.57791 -17.00912 -16.69878 -16.43185 -16.19832 -16.19447 -15.44844 -15.13054 -14.86530 -14.62663 -14.49996 -14.44061 -14.18229 -13.92884 -13.73472 -13.40352 -13.35969 -13.26624 -13.22795 -13.19173 -13.16309 -12.95355 -12.92979 -12.89418 -12.59275 -12.44592 -11.50256 -11.41766 -10.89695 -10.70077 -9.84419 -9.56997 -8.46343 -6.62574 0.13675 0.41865 0.97496 1.28672 1.42760 1.48354 1.52786 2.23293 2.28835 2.66672 2.77609 2.79594 3.02333 3.08888 3.20625 3.30432 3.69031 3.80449 3.83688 4.00572 4.04637 4.11981 4.19366 4.23079 4.29469 4.32294 4.35518 4.47423 4.54108 4.59203 4.70471 4.75363 4.81200 4.83880 4.92364 5.03836 5.14416 5.35602 5.52678 5.69258 5.88167 6.31188 6.66864 6.85432 7.20266 8.52609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.260 5.260 3 C -0.054 4.054 4 C -0.042 4.042 5 C 0.020 3.980 6 C 0.182 3.818 7 H 0.074 0.926 8 C -0.569 4.569 9 H 0.060 0.940 10 C 0.075 3.925 11 N -0.860 5.860 12 Si 0.913 3.087 13 H -0.269 1.269 14 H -0.301 1.301 15 H -0.285 1.285 16 O -0.287 6.287 17 C 0.219 3.781 18 C -0.238 4.238 19 C 0.159 3.841 20 N -0.581 5.581 21 C 0.314 3.686 22 O -0.327 6.327 23 C 0.417 3.583 24 F -0.212 7.212 25 F -0.206 7.206 26 C -0.268 4.268 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.161 0.839 40 H 0.187 0.813 41 H 0.229 0.771 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.396 5.760 19.347 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.082 4.918 3 C -0.195 4.195 4 C -0.183 4.183 5 C -0.101 4.101 6 C 0.129 3.871 7 H 0.091 0.909 8 C -0.607 4.607 9 H 0.078 0.922 10 C -0.133 4.133 11 N -0.495 5.495 12 Si 0.743 3.257 13 H -0.194 1.194 14 H -0.228 1.228 15 H -0.210 1.210 16 O -0.197 6.197 17 C 0.163 3.837 18 C -0.260 4.260 19 C 0.006 3.994 20 N -0.307 5.307 21 C 0.138 3.862 22 O -0.239 6.239 23 C 0.328 3.672 24 F -0.194 7.194 25 F -0.188 7.188 26 C -0.290 4.290 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.179 0.821 40 H 0.203 0.797 41 H 0.245 0.755 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.110 6.054 19.031 20.082 hybrid contribution 0.658 -1.372 -1.507 2.142 sum 2.768 4.682 17.523 18.348 Atomic orbital electron populations 1.24245 0.76686 1.08840 1.08470 1.46017 1.15261 1.15387 1.15117 1.24284 1.06218 0.80141 1.08825 1.24224 1.05835 1.01827 0.86383 1.24050 1.04047 1.00982 0.81010 1.20583 0.76427 0.96650 0.93475 0.90877 1.21435 1.31571 0.95504 1.12148 0.92187 1.25112 0.93838 0.97927 0.96459 1.69786 1.30076 1.09484 1.40124 0.86241 0.79600 0.78513 0.81392 1.19381 1.22810 1.21007 1.86353 1.25433 1.43179 1.64708 1.19034 0.91890 0.84848 0.87938 1.21609 0.92467 1.03778 1.08101 1.22614 1.00536 0.87345 0.88950 1.67403 1.05054 1.31182 1.27100 1.19602 0.87996 0.88004 0.90622 1.86771 1.36254 1.37233 1.63691 1.24030 0.83238 0.83415 0.76492 1.93069 1.79305 1.84787 1.62239 1.93060 1.75181 1.79550 1.71031 1.21144 1.02320 0.98016 1.07500 0.88022 0.87555 0.84120 0.83741 0.84942 0.88676 0.87033 0.85564 0.84082 0.84067 0.85124 0.92050 0.82127 0.79654 0.75504 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.84 7.11 127.69 0.91 1.75 16 2 N -0.26 5.97 0.05 ******* -0.07 5.91 16 3 C -0.05 1.39 7.57 127.69 0.97 2.35 16 4 C -0.04 1.23 8.00 127.69 1.02 2.25 16 5 C 0.02 -0.21 3.48 86.31 0.30 0.10 16 6 C 0.18 0.06 1.39 29.85 0.04 0.10 16 7 H 0.07 -0.31 4.06 -2.39 -0.01 -0.32 16 8 C -0.57 -7.60 8.00 25.60 0.20 -7.39 16 9 H 0.06 1.02 7.82 -2.91 -0.02 0.99 16 10 C 0.08 1.35 5.20 84.65 0.44 1.79 16 11 N -0.86 -15.09 11.08 21.45 0.24 -14.85 16 12 Si 0.91 17.88 29.54 68.60 2.03 19.90 16 13 H -0.27 -5.01 7.11 99.48 0.71 -4.30 16 14 H -0.30 -7.05 7.11 99.48 0.71 -6.35 16 15 H -0.28 -6.33 7.11 99.48 0.71 -5.62 16 16 O -0.29 -0.92 6.17 -90.71 -0.56 -1.48 16 17 C 0.22 1.29 6.11 22.74 0.14 1.43 16 18 C -0.24 -0.96 10.07 22.46 0.23 -0.74 16 19 C 0.16 0.95 11.17 84.56 0.94 1.90 16 20 N -0.58 -6.72 8.07 -309.13 -2.50 -9.21 16 21 C 0.31 3.50 7.18 84.72 0.61 4.11 16 22 O -0.33 -2.84 10.41 -89.96 -0.94 -3.78 16 23 C 0.42 1.87 6.05 113.37 0.69 2.55 16 24 F -0.21 -2.32 16.57 44.97 0.75 -1.57 16 25 F -0.21 -1.67 16.57 44.97 0.75 -0.92 16 26 C -0.27 -2.23 8.70 22.56 0.20 -2.03 16 27 H 0.10 -1.51 5.29 -2.39 -0.01 -1.52 16 28 H 0.11 -1.75 7.94 -2.39 -0.02 -1.77 16 29 H 0.14 -3.95 7.99 -2.39 -0.02 -3.97 16 30 H 0.14 -4.57 8.14 -2.39 -0.02 -4.59 16 31 H 0.13 -3.75 8.14 -2.39 -0.02 -3.77 16 32 H 0.09 -1.94 5.85 -2.39 -0.01 -1.95 16 33 H 0.11 -3.00 8.14 -2.39 -0.02 -3.02 16 34 H 0.13 -3.87 8.13 -2.39 -0.02 -3.89 16 35 H 0.14 -4.82 8.07 -2.39 -0.02 -4.84 16 36 H 0.14 -1.84 8.10 -2.39 -0.02 -1.85 16 37 H 0.13 -0.52 6.33 -2.39 -0.02 -0.53 16 38 H 0.27 5.23 8.31 -92.70 -0.77 4.46 16 39 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16 40 H 0.19 0.00 8.06 -2.91 -0.02 -0.03 16 41 H 0.23 -1.69 8.14 -2.38 -0.02 -1.71 16 42 H 0.15 1.11 5.84 -2.91 -0.02 1.09 16 Total: 0.00 -48.86 342.21 7.42 -41.44 By element: Atomic # 1 Polarization: -44.64 SS G_CDS: 1.04 Total: -43.60 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.68 Total: 8.17 kcal Atomic # 7 Polarization: -15.83 SS G_CDS: -2.33 Total: -18.16 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -1.50 Total: -5.26 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 1.49 Total: -2.50 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: 2.03 Total: 19.90 kcal Total: -48.86 7.42 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229086673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.589 kcal (2) G-P(sol) polarization free energy of solvation -48.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds