Wall clock time and date at job start Tue Mar 31 2020 11:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34947 * 126.03959 * 2 1 4 4 C 1.35315 * 107.74815 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.03882 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47249 * 105.87273 * 5 4 3 7 7 C 1.46845 * 110.99655 * 163.41365 * 6 5 4 8 8 C 1.53038 * 109.50981 * 185.84378 * 7 6 5 9 9 C 1.53114 * 109.28110 * 300.80683 * 8 7 6 10 10 C 1.50702 * 109.57856 * 177.60083 * 9 8 7 11 11 H 1.07995 * 120.00388 * 240.29170 * 10 9 8 12 12 C 1.37883 * 119.99513 * 60.29226 * 10 9 8 13 13 N 1.31514 * 120.00326 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99644 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47337 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46908 * 120.00206 * 14 12 10 17 17 H 1.48498 * 109.47238 * 239.99946 * 14 12 10 18 18 C 1.53113 * 109.15584 * 57.66799 * 9 8 7 19 19 C 1.46846 * 110.99758 * 287.62245 * 6 5 4 20 20 C 1.39865 * 107.92093 * 0.26649 * 4 3 2 21 21 C 1.50698 * 125.90211 * 179.73833 * 20 4 3 22 22 F 1.39896 * 109.47540 * 91.63951 * 21 20 4 23 23 F 1.39899 * 109.47124 * 211.64622 * 21 20 4 24 24 F 1.39902 * 109.46832 * 331.64423 * 21 20 4 25 25 N 1.30844 * 108.19898 * 359.55434 * 20 4 3 26 26 H 1.08998 * 109.46839 * 89.99517 * 1 2 3 27 27 H 1.08997 * 109.47192 * 209.99679 * 1 2 3 28 28 H 1.09002 * 109.47171 * 329.99306 * 1 2 3 29 29 H 1.08004 * 126.12486 * 359.96236 * 3 2 1 30 30 H 1.09005 * 109.47169 * 345.87180 * 5 4 3 31 31 H 1.09005 * 109.46824 * 225.87108 * 5 4 3 32 32 H 1.09001 * 109.46381 * 305.85336 * 7 6 5 33 33 H 1.09000 * 109.46676 * 65.83816 * 7 6 5 34 34 H 1.09003 * 109.50313 * 60.75664 * 8 7 6 35 35 H 1.09003 * 109.50318 * 180.86958 * 8 7 6 36 36 H 1.09001 * 109.53153 * 297.76257 * 9 8 7 37 37 H 0.96995 * 119.99852 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.51033 * 182.40269 * 18 9 8 39 39 H 1.09000 * 109.53513 * 62.30371 * 18 9 8 40 40 H 1.09000 * 109.45990 * 294.17712 * 19 6 5 41 41 H 1.08997 * 109.46169 * 54.15778 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 7 5.3861 1.5229 1.3339 7 6 6.7637 2.0288 1.2835 8 6 7.4223 1.8555 2.6540 9 6 6.6148 2.6240 3.7037 10 6 7.2237 2.4099 5.0655 11 1 6.6410 1.9538 5.8520 12 6 8.5250 2.7964 5.3072 13 7 9.2346 3.3523 4.3495 14 14 9.2801 2.5304 6.9949 15 1 8.2815 1.8911 7.8889 16 1 10.4693 1.6495 6.8719 17 1 9.6902 3.8386 7.5655 18 6 5.1720 2.1112 3.7021 19 6 4.5785 2.2768 2.3012 20 6 3.5347 -0.7321 -0.0052 21 6 4.7496 -1.6236 -0.0123 22 9 5.1070 -1.9355 1.3038 23 9 4.4594 -2.8019 -0.7085 24 9 5.8106 -0.9610 -0.6389 25 7 2.2891 -1.1327 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9282 2.1193 -0.0006 30 1 4.4822 2.5668 -0.2495 31 1 5.4808 1.1759 -0.7360 32 1 7.3283 1.4712 0.5361 33 1 6.7531 3.0856 1.0167 34 1 7.4456 0.7976 2.9154 35 1 8.4397 2.2452 2.6207 36 1 6.6237 3.6872 3.4638 37 1 10.1499 3.6245 4.5197 38 1 4.5815 2.6836 4.4174 39 1 5.1594 1.0574 3.9804 40 1 4.5781 3.3324 2.0294 41 1 3.5561 1.8993 2.2932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232087663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:20 Heat of formation + Delta-G solvation = -69.708616 kcal Electronic energy + Delta-G solvation = -27911.788679 eV Core-core repulsion = 23606.449083 eV Total energy + Delta-G solvation = -4305.339596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.91806 -47.49047 -47.35615 -41.61732 -38.10156 -34.50366 -33.55659 -31.79310 -30.44767 -29.55481 -28.55860 -26.66838 -25.14821 -23.77392 -22.04488 -21.41366 -21.26729 -20.46571 -18.49958 -18.27389 -18.02006 -17.65435 -16.39069 -16.34534 -15.85458 -15.03491 -14.71077 -14.39546 -14.28987 -14.25254 -14.04445 -13.77201 -13.65097 -13.54460 -13.50933 -13.20619 -13.04843 -12.93091 -12.57410 -12.30687 -12.16361 -12.11860 -11.47065 -11.22997 -10.96598 -10.91846 -10.70795 -10.37689 -10.13739 -9.90495 -9.84890 -9.37563 -8.89017 -8.73634 -8.61171 -8.23189 -7.68370 -5.91564 -3.96193 1.41297 1.89355 2.20375 2.89578 3.34504 3.42604 3.46976 3.75973 4.05722 4.46051 4.50238 4.53189 4.59389 4.68950 4.77596 5.03610 5.05636 5.21439 5.38949 5.47555 5.68832 5.80664 5.84997 6.00501 6.07020 6.17857 6.28886 6.39249 6.62555 6.68141 6.69367 6.93318 7.14566 7.17946 7.25267 7.51378 7.69504 7.76193 7.90545 8.12866 8.23325 8.55537 9.07568 9.67936 11.14646 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.003818 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.959579 B = 7332.662909 C = 7879.219953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.360 5.360 3 C 0.060 3.940 4 C -0.172 4.172 5 C 0.116 3.884 6 N -0.530 5.530 7 C 0.060 3.940 8 C -0.103 4.103 9 C 0.048 3.952 10 C -0.508 4.508 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.105 4.105 19 C 0.064 3.936 20 C 0.005 3.995 21 C 0.560 3.440 22 F -0.158 7.158 23 F -0.178 7.178 24 F -0.161 7.161 25 N -0.247 5.247 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.183 0.817 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.020 0.980 37 H 0.258 0.742 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.072 -4.683 -12.977 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.143 5.143 3 C -0.086 4.086 4 C -0.184 4.184 5 C -0.013 4.013 6 N -0.255 5.255 7 C -0.067 4.067 8 C -0.142 4.142 9 C 0.030 3.970 10 C -0.546 4.546 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.143 4.143 19 C -0.063 4.063 20 C -0.162 4.162 21 C 0.503 3.497 22 F -0.140 7.140 23 F -0.159 7.159 24 F -0.143 7.143 25 N -0.071 5.071 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.200 0.800 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.788 -6.103 -12.836 21.997 hybrid contribution 0.947 1.315 0.670 1.754 sum -15.841 -4.787 -12.166 20.539 Atomic orbital electron populations 1.21980 0.73230 1.05094 1.03750 1.48423 1.06830 1.03322 1.55737 1.22416 0.90025 0.93631 1.02550 1.19805 0.95238 0.91679 1.11670 1.20524 0.92089 0.95683 0.93030 1.61938 1.02879 1.55776 1.04907 1.22273 0.87333 0.96304 1.00807 1.21652 1.01623 1.00001 0.90892 1.18678 0.89022 0.94806 0.94514 1.21254 0.97444 1.39308 0.96620 0.92800 1.24957 0.97259 0.95175 0.96597 1.69884 1.09493 1.41963 1.31800 0.86602 0.79252 0.77690 0.84834 1.19880 1.21082 1.21215 1.21661 0.99092 1.00967 0.92608 1.22080 0.95843 0.94202 0.94208 1.21884 0.92529 0.94335 1.07466 1.16795 0.81263 0.77099 0.74532 1.93288 1.92387 1.92950 1.35331 1.93198 1.93456 1.49715 1.79567 1.93194 1.58193 1.80448 1.82427 1.77287 0.99918 1.08336 1.21578 0.90279 0.88880 0.88870 0.79982 0.94096 0.89463 0.92430 0.95918 0.93743 0.88975 0.96211 0.93226 0.93480 0.92570 0.95928 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.85 0.69 1.24 16 2 N -0.36 -3.84 4.01 -68.16 -0.27 -4.11 16 3 C 0.06 0.63 11.00 -17.22 -0.19 0.44 16 4 C -0.17 -2.33 4.79 -105.06 -0.50 -2.84 16 5 C 0.12 1.65 4.77 -4.97 -0.02 1.63 16 6 N -0.53 -9.39 4.60 -236.11 -1.09 -10.48 16 7 C 0.06 1.17 5.44 -3.83 -0.02 1.15 16 8 C -0.10 -2.47 5.12 -26.65 -0.14 -2.60 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.51 -14.13 8.57 -34.44 -0.29 -14.43 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 13 N -0.89 -25.55 11.38 55.43 0.63 -24.92 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 19 C 0.06 1.15 5.30 -3.83 -0.02 1.13 16 20 C 0.00 0.07 6.56 -82.41 -0.54 -0.47 16 21 C 0.56 8.68 3.51 36.00 0.13 8.81 16 22 F -0.16 -2.76 17.30 2.25 0.04 -2.72 16 23 F -0.18 -2.64 17.26 2.25 0.04 -2.60 16 24 F -0.16 -2.47 14.88 2.25 0.03 -2.44 16 25 N -0.25 -3.50 12.52 33.67 0.42 -3.08 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.04 0.52 8.03 -51.93 -0.42 0.11 16 31 H 0.09 1.23 6.23 -51.93 -0.32 0.91 16 32 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 2.44 6.18 -51.93 -0.32 2.12 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.86 7.05 -51.93 -0.37 0.49 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -31.63 344.95 -6.98 -38.61 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -5.61 Total: -4.29 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.35 Total: -5.73 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.31 Total: -42.59 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.63 -6.98 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232087663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.102 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds