Wall clock time and date at job start Tue Mar 31 2020 11:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34947 * 126.03959 * 2 1 4 4 C 1.35315 * 107.74815 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.03882 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47249 * 105.87273 * 5 4 3 7 7 C 1.46845 * 110.99655 * 163.41365 * 6 5 4 8 8 C 1.53038 * 109.50981 * 185.84378 * 7 6 5 9 9 C 1.53114 * 109.28110 * 300.80683 * 8 7 6 10 10 C 1.50702 * 109.57856 * 177.60083 * 9 8 7 11 11 H 1.07995 * 120.00388 * 240.29170 * 10 9 8 12 12 C 1.37883 * 119.99513 * 60.29226 * 10 9 8 13 13 N 1.31514 * 120.00326 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99644 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47337 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46908 * 120.00206 * 14 12 10 17 17 H 1.48498 * 109.47238 * 239.99946 * 14 12 10 18 18 C 1.53113 * 109.15584 * 57.66799 * 9 8 7 19 19 C 1.46846 * 110.99758 * 287.62245 * 6 5 4 20 20 C 1.39865 * 107.92093 * 0.26649 * 4 3 2 21 21 C 1.50698 * 125.90211 * 179.73833 * 20 4 3 22 22 F 1.39896 * 109.47540 * 91.63951 * 21 20 4 23 23 F 1.39899 * 109.47124 * 211.64622 * 21 20 4 24 24 F 1.39902 * 109.46832 * 331.64423 * 21 20 4 25 25 N 1.30844 * 108.19898 * 359.55434 * 20 4 3 26 26 H 1.08998 * 109.46839 * 89.99517 * 1 2 3 27 27 H 1.08997 * 109.47192 * 209.99679 * 1 2 3 28 28 H 1.09002 * 109.47171 * 329.99306 * 1 2 3 29 29 H 1.08004 * 126.12486 * 359.96236 * 3 2 1 30 30 H 1.09005 * 109.47169 * 345.87180 * 5 4 3 31 31 H 1.09005 * 109.46824 * 225.87108 * 5 4 3 32 32 H 1.09001 * 109.46381 * 305.85336 * 7 6 5 33 33 H 1.09000 * 109.46676 * 65.83816 * 7 6 5 34 34 H 1.09003 * 109.50313 * 60.75664 * 8 7 6 35 35 H 1.09003 * 109.50318 * 180.86958 * 8 7 6 36 36 H 1.09001 * 109.53153 * 297.76257 * 9 8 7 37 37 H 0.96995 * 119.99852 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.51033 * 182.40269 * 18 9 8 39 39 H 1.09000 * 109.53513 * 62.30371 * 18 9 8 40 40 H 1.09000 * 109.45990 * 294.17712 * 19 6 5 41 41 H 1.08997 * 109.46169 * 54.15778 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 7 5.3861 1.5229 1.3339 7 6 6.7637 2.0288 1.2835 8 6 7.4223 1.8555 2.6540 9 6 6.6148 2.6240 3.7037 10 6 7.2237 2.4099 5.0655 11 1 6.6410 1.9538 5.8520 12 6 8.5250 2.7964 5.3072 13 7 9.2346 3.3523 4.3495 14 14 9.2801 2.5304 6.9949 15 1 8.2815 1.8911 7.8889 16 1 10.4693 1.6495 6.8719 17 1 9.6902 3.8386 7.5655 18 6 5.1720 2.1112 3.7021 19 6 4.5785 2.2768 2.3012 20 6 3.5347 -0.7321 -0.0052 21 6 4.7496 -1.6236 -0.0123 22 9 5.1070 -1.9355 1.3038 23 9 4.4594 -2.8019 -0.7085 24 9 5.8106 -0.9610 -0.6389 25 7 2.2891 -1.1327 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9282 2.1193 -0.0006 30 1 4.4822 2.5668 -0.2495 31 1 5.4808 1.1759 -0.7360 32 1 7.3283 1.4712 0.5361 33 1 6.7531 3.0856 1.0167 34 1 7.4456 0.7976 2.9154 35 1 8.4397 2.2452 2.6207 36 1 6.6237 3.6872 3.4638 37 1 10.1499 3.6245 4.5197 38 1 4.5815 2.6836 4.4174 39 1 5.1594 1.0574 3.9804 40 1 4.5781 3.3324 2.0294 41 1 3.5561 1.8993 2.2932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232087663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:19 Heat of formation + Delta-G solvation = -89.547550 kcal Electronic energy + Delta-G solvation = -27912.648960 eV Core-core repulsion = 23606.449083 eV Total energy + Delta-G solvation = -4306.199877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.12610 -48.67420 -48.61549 -42.50984 -39.64492 -35.99964 -34.68164 -33.44291 -31.81080 -31.11268 -29.44909 -28.14969 -26.55058 -25.02362 -23.67571 -23.00697 -22.21673 -21.52799 -20.26508 -19.49882 -19.19151 -18.65818 -18.41139 -17.22787 -16.90893 -16.56323 -16.07806 -15.88893 -15.50632 -15.50116 -15.25502 -15.01698 -14.82751 -14.79229 -14.74925 -14.60467 -14.32427 -14.11023 -13.90040 -13.61145 -13.38064 -13.29334 -12.98168 -12.82980 -12.68632 -12.57377 -12.22184 -11.94056 -11.83692 -11.78630 -11.32038 -10.77070 -10.67848 -10.61062 -10.34516 -9.62540 -9.04736 -8.05193 -6.17639 0.51996 1.06570 1.24044 1.40100 1.42565 1.53438 1.88546 2.45675 2.71478 2.98965 3.20723 3.23653 3.42826 3.74878 3.86005 4.14903 4.29685 4.35113 4.40335 4.46073 4.53074 4.57944 4.60759 4.72959 4.78150 4.86711 4.93045 4.98617 5.03859 5.09653 5.17695 5.29257 5.40345 5.61878 5.67353 5.92026 6.06137 6.09518 6.26940 6.38541 6.44193 6.46015 6.93852 7.49605 8.99288 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.003818 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.959579 B = 7332.662909 C = 7879.219953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.350 5.350 3 C 0.083 3.917 4 C -0.199 4.199 5 C 0.121 3.879 6 N -0.543 5.543 7 C 0.073 3.927 8 C -0.094 4.094 9 C 0.046 3.954 10 C -0.532 4.532 11 H 0.046 0.954 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 0.949 3.051 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.279 1.279 18 C -0.099 4.099 19 C 0.075 3.925 20 C -0.015 4.015 21 C 0.555 3.445 22 F -0.176 7.176 23 F -0.178 7.178 24 F -0.164 7.164 25 N -0.278 5.278 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.227 0.773 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.022 0.978 35 H 0.061 0.939 36 H -0.006 1.006 37 H 0.259 0.741 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.503 -3.804 -13.630 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.133 5.133 3 C -0.064 4.064 4 C -0.211 4.211 5 C -0.007 4.007 6 N -0.268 5.268 7 C -0.054 4.054 8 C -0.132 4.132 9 C 0.028 3.972 10 C -0.571 4.571 11 H 0.064 0.936 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.776 3.224 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.204 1.204 18 C -0.137 4.137 19 C -0.052 4.052 20 C -0.180 4.180 21 C 0.499 3.501 22 F -0.157 7.157 23 F -0.160 7.160 24 F -0.145 7.145 25 N -0.104 5.104 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.144 0.856 29 H 0.244 0.756 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.012 0.988 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.248 -5.243 -13.499 24.088 hybrid contribution 1.608 1.032 0.854 2.093 sum -17.640 -4.211 -12.646 22.110 Atomic orbital electron populations 1.22462 0.70241 1.06746 1.05625 1.48877 1.08361 1.02473 1.53553 1.23014 0.88798 0.95190 0.99388 1.19817 0.96197 0.90894 1.14232 1.20484 0.92381 0.97266 0.90548 1.61830 1.01987 1.55725 1.07228 1.21984 0.88774 0.96699 0.97978 1.21400 1.00406 0.97921 0.93512 1.18641 0.91562 0.93434 0.93609 1.21619 0.98031 1.39517 0.97893 0.93564 1.25689 0.97707 0.94965 1.00074 1.70009 1.09688 1.42404 1.33409 0.85640 0.78314 0.77784 0.80712 1.19495 1.20782 1.20431 1.21520 0.97003 0.99529 0.95626 1.21942 0.96559 0.94947 0.91778 1.21785 0.92332 0.94848 1.09003 1.17001 0.81900 0.77400 0.73782 1.93246 1.92661 1.93167 1.36649 1.93186 1.93449 1.49879 1.79443 1.93178 1.58515 1.80445 1.82352 1.77224 1.00034 1.10380 1.22781 0.88262 0.88898 0.85606 0.75647 0.91629 0.89784 0.91372 0.95735 0.95937 0.92096 0.98757 0.93133 0.93005 0.94276 0.95004 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.47 127.77 1.47 2.06 16 2 N -0.35 -6.21 4.01 -369.56 -1.48 -7.69 16 3 C 0.08 1.39 11.00 83.54 0.92 2.31 16 4 C -0.20 -4.87 4.79 -20.15 -0.10 -4.96 16 5 C 0.12 3.16 4.77 85.56 0.41 3.57 16 6 N -0.54 -18.49 4.60 -900.90 -4.14 -22.63 16 7 C 0.07 2.85 5.44 86.33 0.47 3.32 16 8 C -0.09 -4.63 5.12 30.65 0.16 -4.47 16 9 C 0.05 2.36 2.16 -11.46 -0.02 2.34 16 10 C -0.53 -30.38 8.57 25.60 0.22 -30.16 16 11 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 12 C 0.01 0.80 5.31 84.66 0.45 1.25 16 13 N -0.92 -53.64 11.38 21.45 0.24 -53.40 16 14 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C -0.10 -4.21 5.32 30.64 0.16 -4.05 16 19 C 0.08 2.53 5.30 86.33 0.46 2.98 16 20 C -0.01 -0.42 6.56 43.10 0.28 -0.14 16 21 C 0.56 17.34 3.51 71.24 0.25 17.59 16 22 F -0.18 -6.28 17.30 44.97 0.78 -5.50 16 23 F -0.18 -5.36 17.26 44.97 0.78 -4.58 16 24 F -0.16 -5.04 14.88 44.97 0.67 -4.38 16 25 N -0.28 -7.44 12.52 -47.39 -0.59 -8.04 16 26 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.07 1.41 8.03 -2.38 -0.02 1.39 16 31 H 0.08 2.24 6.23 -2.38 -0.01 2.22 16 32 H 0.07 2.48 7.95 -2.39 -0.02 2.46 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 3.36 6.18 -2.39 -0.01 3.34 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 2.26 7.05 -2.39 -0.02 2.24 16 Total: -1.00 -71.23 344.95 4.44 -66.79 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.04 Total: 0.90 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.12 Total: -8.35 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -5.97 Total: -91.76 kcal Atomic # 9 Polarization: -16.68 SS G_CDS: 2.22 Total: -14.46 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.23 4.44 -66.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232087663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.762 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds