Wall clock time and date at job start Tue Mar 31 2020 11:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34947 * 126.03804 * 2 1 4 4 C 1.35320 * 107.74510 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.03611 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46665 * 260.02179 * 5 4 3 7 7 C 1.46839 * 111.00012 * 66.05382 * 6 5 4 8 8 C 1.53041 * 109.52631 * 185.83575 * 7 6 5 9 9 C 1.53120 * 109.27383 * 300.81613 * 8 7 6 10 10 C 1.53122 * 109.15785 * 57.65704 * 9 8 7 11 11 H 1.08997 * 109.50361 * 62.28368 * 10 9 8 12 12 C 1.50706 * 109.50022 * 182.40123 * 10 9 8 13 13 H 1.07999 * 119.99742 * 119.99494 * 12 10 9 14 14 C 1.37873 * 119.99817 * 299.99776 * 12 10 9 15 15 N 1.31514 * 120.00588 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99856 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47145 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46882 * 119.99991 * 16 14 12 19 19 H 1.48499 * 109.47716 * 239.99826 * 16 14 12 20 20 C 1.46853 * 110.99619 * 190.25657 * 6 5 4 21 21 C 1.39869 * 107.91812 * 0.02562 * 4 3 2 22 22 C 1.50703 * 125.89477 * 179.97438 * 21 4 3 23 23 F 1.39905 * 109.47157 * 90.00056 * 22 21 4 24 24 F 1.39900 * 109.47159 * 330.00357 * 22 21 4 25 25 F 1.39897 * 109.47274 * 210.00048 * 22 21 4 26 26 N 1.30836 * 108.20480 * 0.26020 * 21 4 3 27 27 H 1.08999 * 109.46930 * 90.00234 * 1 2 3 28 28 H 1.08997 * 109.47236 * 209.99357 * 1 2 3 29 29 H 1.08998 * 109.47234 * 329.99900 * 1 2 3 30 30 H 1.08003 * 126.12546 * 0.03842 * 3 2 1 31 31 H 1.08994 * 109.47286 * 20.02592 * 5 4 3 32 32 H 1.08997 * 109.46762 * 140.02605 * 5 4 3 33 33 H 1.09007 * 109.46392 * 305.84980 * 7 6 5 34 34 H 1.09003 * 109.46833 * 65.81303 * 7 6 5 35 35 H 1.08997 * 109.50025 * 60.76084 * 8 7 6 36 36 H 1.08999 * 109.50250 * 180.87624 * 8 7 6 37 37 H 1.09003 * 109.51697 * 177.55697 * 9 8 7 38 38 H 1.08994 * 109.52452 * 297.68142 * 9 8 7 39 39 H 0.96998 * 120.00669 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.46498 * 294.18254 * 20 6 5 41 41 H 1.09000 * 109.45830 * 54.15155 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 4.7680 1.5453 0.0002 6 7 5.3060 1.6348 -1.3638 7 6 4.3718 2.3370 -2.2528 8 6 4.8957 2.2843 -3.6898 9 6 6.2773 2.9419 -3.7485 10 6 7.2179 2.2224 -2.7779 11 1 7.3318 1.1827 -3.0848 12 6 8.5638 2.9005 -2.7858 13 1 8.9598 3.3251 -1.8752 14 6 9.2893 2.9788 -3.9556 15 7 8.8068 2.4623 -5.0646 16 14 10.9571 3.8200 -3.9656 17 1 11.2704 4.3145 -2.6009 18 1 11.9981 2.8501 -4.3913 19 1 10.9293 4.9635 -4.9127 20 6 6.6267 2.2770 -1.3674 21 6 3.5346 -0.7322 0.0003 22 6 4.7497 -1.6237 0.0003 23 9 5.1256 -1.8998 1.3193 24 9 5.8015 -0.9785 -0.6590 25 9 4.4500 -2.8204 -0.6594 26 7 2.2891 -1.1328 -0.0060 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.9282 2.1193 0.0006 31 1 4.5001 2.5417 0.3514 32 1 5.5222 1.1178 0.6609 33 1 3.3943 1.8570 -2.2048 34 1 4.2815 3.3764 -1.9370 35 1 4.9730 1.2457 -4.0110 36 1 4.2099 2.8190 -4.3470 37 1 6.6730 2.8680 -4.7615 38 1 6.1936 3.9912 -3.4658 39 1 9.3173 2.5171 -5.8876 40 1 6.5260 3.3165 -1.0558 41 1 7.2870 1.7531 -0.6763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232088334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:39 Heat of formation + Delta-G solvation = -67.576581 kcal Electronic energy + Delta-G solvation = -27959.881356 eV Core-core repulsion = 23654.634212 eV Total energy + Delta-G solvation = -4305.247144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.85401 -47.44359 -47.24925 -41.61904 -38.08637 -34.44454 -33.47781 -31.98528 -30.49916 -29.63976 -28.52813 -26.20191 -24.89509 -24.37360 -21.97362 -21.43153 -21.24563 -20.30600 -18.52319 -18.28349 -17.89830 -17.65519 -16.44470 -16.23568 -15.83241 -14.98870 -14.58291 -14.43916 -14.28113 -14.11123 -13.97223 -13.78879 -13.59822 -13.42079 -13.38798 -13.26994 -13.06297 -12.97955 -12.60440 -12.30346 -12.12343 -12.05239 -11.64903 -11.27465 -10.93662 -10.89785 -10.62621 -10.58840 -10.06920 -9.83316 -9.77417 -9.41156 -9.05054 -8.66769 -8.62612 -8.24418 -7.56664 -5.91413 -3.97270 1.42066 1.90894 2.21251 2.93621 3.33862 3.41987 3.45542 3.78428 4.11629 4.45792 4.47630 4.58404 4.60259 4.75187 4.79046 5.03698 5.06735 5.21801 5.38742 5.48735 5.68056 5.78266 5.86386 5.99283 6.07796 6.12665 6.31463 6.46292 6.58179 6.63527 6.77340 6.81240 7.04290 7.18360 7.28839 7.46230 7.74134 7.81672 7.88325 8.16944 8.24944 8.54911 9.07292 9.66787 11.14522 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.003939 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.241944 B = 7107.596627 C = 7877.221288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.360 5.360 3 C 0.060 3.940 4 C -0.173 4.173 5 C 0.123 3.877 6 N -0.528 5.528 7 C 0.066 3.934 8 C -0.116 4.116 9 C -0.109 4.109 10 C 0.055 3.945 11 H 0.036 0.964 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.071 3.929 21 C 0.004 3.996 22 C 0.551 3.449 23 F -0.177 7.177 24 F -0.136 7.136 25 F -0.174 7.174 26 N -0.246 5.246 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.183 0.817 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.258 0.742 40 H 0.018 0.982 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.338 -3.356 10.975 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.143 5.143 3 C -0.086 4.086 4 C -0.185 4.185 5 C -0.006 4.006 6 N -0.253 5.253 7 C -0.062 4.062 8 C -0.154 4.154 9 C -0.147 4.147 10 C 0.036 3.964 11 H 0.054 0.946 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.056 4.056 21 C -0.163 4.163 22 C 0.494 3.506 23 F -0.158 7.158 24 F -0.117 7.117 25 F -0.156 7.156 26 N -0.071 5.071 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.200 0.800 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.145 -4.861 10.605 21.571 hybrid contribution 1.279 1.882 0.170 2.281 sum -16.866 -2.980 10.775 20.235 Atomic orbital electron populations 1.21977 0.73264 1.04850 1.03967 1.48432 1.06822 1.03345 1.55749 1.22408 0.90037 0.93599 1.02579 1.19821 0.95297 0.91697 1.11661 1.20396 0.92065 0.95694 0.92440 1.61978 1.03602 1.53669 1.06003 1.21998 0.94909 0.94773 0.94539 1.21660 0.98838 1.01249 0.93673 1.21642 0.91894 0.96763 1.04448 1.18660 0.92551 0.97159 0.88005 0.94625 1.21193 1.02327 1.36634 0.94935 0.92803 1.24926 0.97685 0.95533 0.95702 1.69903 1.37633 1.45538 0.99643 0.86596 0.84536 0.79259 0.77926 1.19871 1.21087 1.21204 1.22296 0.87079 0.94605 1.01618 1.21943 0.92612 0.94330 1.07402 1.16946 0.82095 0.77506 0.74040 1.93208 1.92234 1.93997 1.36405 1.93419 1.57457 1.80619 1.80245 1.93205 1.93304 1.48010 1.81063 1.77290 0.99941 1.08283 1.21571 0.90161 0.88957 0.88941 0.80028 0.94292 0.90095 0.92828 0.96111 0.92204 0.93844 0.89211 0.95268 0.93193 0.96358 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.85 0.69 1.24 16 2 N -0.36 -3.86 4.01 -68.16 -0.27 -4.14 16 3 C 0.06 0.64 10.55 -17.22 -0.18 0.45 16 4 C -0.17 -2.38 4.67 -105.05 -0.49 -2.87 16 5 C 0.12 1.82 4.40 -4.98 -0.02 1.80 16 6 N -0.53 -9.60 3.72 -236.12 -0.88 -10.48 16 7 C 0.07 1.13 5.31 -3.84 -0.02 1.11 16 8 C -0.12 -2.29 6.09 -26.65 -0.16 -2.46 16 9 C -0.11 -2.59 5.02 -26.61 -0.13 -2.72 16 10 C 0.06 1.38 2.27 -91.69 -0.21 1.17 16 11 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 12 C -0.51 -14.05 8.56 -34.44 -0.29 -14.35 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -25.54 11.35 55.43 0.63 -24.91 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.07 1.48 4.68 -3.83 -0.02 1.47 16 21 C 0.00 0.06 6.56 -82.40 -0.54 -0.48 16 22 C 0.55 8.70 3.50 36.01 0.13 8.83 16 23 F -0.18 -2.64 17.30 2.25 0.04 -2.61 16 24 F -0.14 -2.43 14.84 2.25 0.03 -2.40 16 25 F -0.17 -2.81 17.25 2.25 0.04 -2.77 16 26 N -0.25 -3.53 12.50 33.67 0.42 -3.11 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.08 1.21 7.63 -51.93 -0.40 0.82 16 33 H 0.05 0.83 6.46 -51.92 -0.34 0.50 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -31.44 343.98 -6.84 -38.28 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -5.66 Total: -4.23 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.35 Total: -5.17 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.10 Total: -42.63 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.11 Total: -7.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.44 -6.84 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232088334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.296 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds