Wall clock time and date at job start Tue Mar 31 2020 11:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34947 * 126.03804 * 2 1 4 4 C 1.35320 * 107.74510 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.03611 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46665 * 260.02179 * 5 4 3 7 7 C 1.46839 * 111.00012 * 66.05382 * 6 5 4 8 8 C 1.53041 * 109.52631 * 185.83575 * 7 6 5 9 9 C 1.53120 * 109.27383 * 300.81613 * 8 7 6 10 10 C 1.53122 * 109.15785 * 57.65704 * 9 8 7 11 11 H 1.08997 * 109.50361 * 62.28368 * 10 9 8 12 12 C 1.50706 * 109.50022 * 182.40123 * 10 9 8 13 13 H 1.07999 * 119.99742 * 119.99494 * 12 10 9 14 14 C 1.37873 * 119.99817 * 299.99776 * 12 10 9 15 15 N 1.31514 * 120.00588 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99856 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47145 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46882 * 119.99991 * 16 14 12 19 19 H 1.48499 * 109.47716 * 239.99826 * 16 14 12 20 20 C 1.46853 * 110.99619 * 190.25657 * 6 5 4 21 21 C 1.39869 * 107.91812 * 0.02562 * 4 3 2 22 22 C 1.50703 * 125.89477 * 179.97438 * 21 4 3 23 23 F 1.39905 * 109.47157 * 90.00056 * 22 21 4 24 24 F 1.39900 * 109.47159 * 330.00357 * 22 21 4 25 25 F 1.39897 * 109.47274 * 210.00048 * 22 21 4 26 26 N 1.30836 * 108.20480 * 0.26020 * 21 4 3 27 27 H 1.08999 * 109.46930 * 90.00234 * 1 2 3 28 28 H 1.08997 * 109.47236 * 209.99357 * 1 2 3 29 29 H 1.08998 * 109.47234 * 329.99900 * 1 2 3 30 30 H 1.08003 * 126.12546 * 0.03842 * 3 2 1 31 31 H 1.08994 * 109.47286 * 20.02592 * 5 4 3 32 32 H 1.08997 * 109.46762 * 140.02605 * 5 4 3 33 33 H 1.09007 * 109.46392 * 305.84980 * 7 6 5 34 34 H 1.09003 * 109.46833 * 65.81303 * 7 6 5 35 35 H 1.08997 * 109.50025 * 60.76084 * 8 7 6 36 36 H 1.08999 * 109.50250 * 180.87624 * 8 7 6 37 37 H 1.09003 * 109.51697 * 177.55697 * 9 8 7 38 38 H 1.08994 * 109.52452 * 297.68142 * 9 8 7 39 39 H 0.96998 * 120.00669 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.46498 * 294.18254 * 20 6 5 41 41 H 1.09000 * 109.45830 * 54.15155 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 4.7680 1.5453 0.0002 6 7 5.3060 1.6348 -1.3638 7 6 4.3718 2.3370 -2.2528 8 6 4.8957 2.2843 -3.6898 9 6 6.2773 2.9419 -3.7485 10 6 7.2179 2.2224 -2.7779 11 1 7.3318 1.1827 -3.0848 12 6 8.5638 2.9005 -2.7858 13 1 8.9598 3.3251 -1.8752 14 6 9.2893 2.9788 -3.9556 15 7 8.8068 2.4623 -5.0646 16 14 10.9571 3.8200 -3.9656 17 1 11.2704 4.3145 -2.6009 18 1 11.9981 2.8501 -4.3913 19 1 10.9293 4.9635 -4.9127 20 6 6.6267 2.2770 -1.3674 21 6 3.5346 -0.7322 0.0003 22 6 4.7497 -1.6237 0.0003 23 9 5.1256 -1.8998 1.3193 24 9 5.8015 -0.9785 -0.6590 25 9 4.4500 -2.8204 -0.6594 26 7 2.2891 -1.1328 -0.0060 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.9282 2.1193 0.0006 31 1 4.5001 2.5417 0.3514 32 1 5.5222 1.1178 0.6609 33 1 3.3943 1.8570 -2.2048 34 1 4.2815 3.3764 -1.9370 35 1 4.9730 1.2457 -4.0110 36 1 4.2099 2.8190 -4.3470 37 1 6.6730 2.8680 -4.7615 38 1 6.1936 3.9912 -3.4658 39 1 9.3173 2.5171 -5.8876 40 1 6.5260 3.3165 -1.0558 41 1 7.2870 1.7531 -0.6763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232088334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:39 Heat of formation + Delta-G solvation = -86.911125 kcal Electronic energy + Delta-G solvation = -27960.719765 eV Core-core repulsion = 23654.634212 eV Total energy + Delta-G solvation = -4306.085553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.10601 -48.67646 -48.55354 -42.53326 -39.63182 -35.88055 -34.68886 -33.60571 -31.83939 -31.25017 -29.40683 -27.39465 -26.85524 -25.42823 -23.48793 -23.04671 -22.21421 -21.43260 -20.25679 -19.52395 -19.13824 -18.72503 -18.32415 -17.20691 -16.86173 -16.56311 -16.08631 -15.73575 -15.51606 -15.47852 -15.23361 -15.04218 -14.87583 -14.72179 -14.69295 -14.61353 -14.34761 -14.11773 -13.85937 -13.58261 -13.40360 -13.31594 -13.08125 -12.84004 -12.70487 -12.50613 -12.29135 -11.93624 -11.76682 -11.65309 -11.33299 -10.83391 -10.69328 -10.59671 -10.33270 -9.64550 -8.94818 -8.03501 -6.17447 0.50874 1.06554 1.22504 1.42199 1.44145 1.55390 1.89396 2.46248 2.70941 3.01221 3.23497 3.28501 3.42375 3.74053 3.84453 4.13723 4.27558 4.32501 4.41170 4.45742 4.51529 4.56784 4.68093 4.73147 4.75146 4.82896 4.95687 4.97201 5.05230 5.07745 5.18607 5.26747 5.45847 5.58555 5.68528 5.91505 6.04239 6.21269 6.26110 6.29308 6.47585 6.54431 6.96715 7.50401 9.01165 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.003939 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.241944 B = 7107.596627 C = 7877.221288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.349 5.349 3 C 0.086 3.914 4 C -0.200 4.200 5 C 0.129 3.871 6 N -0.544 5.544 7 C 0.074 3.926 8 C -0.110 4.110 9 C -0.101 4.101 10 C 0.053 3.947 11 H -0.010 1.010 12 C -0.532 4.532 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.917 5.917 16 Si 0.953 3.047 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.280 1.280 20 C 0.087 3.913 21 C -0.016 4.016 22 C 0.547 3.453 23 F -0.176 7.176 24 F -0.154 7.154 25 F -0.181 7.181 26 N -0.277 5.277 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.228 0.772 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.258 0.742 40 H 0.023 0.977 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.790 -1.588 12.238 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.132 5.132 3 C -0.062 4.062 4 C -0.212 4.212 5 C 0.001 3.999 6 N -0.268 5.268 7 C -0.054 4.054 8 C -0.148 4.148 9 C -0.139 4.139 10 C 0.034 3.966 11 H 0.008 0.992 12 C -0.570 4.570 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.206 1.206 20 C -0.040 4.040 21 C -0.181 4.181 22 C 0.491 3.509 23 F -0.157 7.157 24 F -0.135 7.135 25 F -0.163 7.163 26 N -0.103 5.103 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.244 0.756 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.625 -3.113 11.886 24.008 hybrid contribution 1.936 1.282 -0.216 2.332 sum -18.689 -1.831 11.670 22.110 Atomic orbital electron populations 1.22475 0.70169 1.06980 1.05467 1.48891 1.08379 1.02443 1.53455 1.22999 0.88693 0.95195 0.99305 1.19794 0.96201 0.90860 1.14355 1.20323 0.92406 0.97210 0.89980 1.61842 1.02742 1.53635 1.08611 1.21939 0.95335 0.95920 0.92182 1.21570 0.97004 0.99673 0.96583 1.21426 0.93951 0.96787 1.01763 1.18574 0.92767 0.94227 0.91043 0.99219 1.21580 1.03747 1.36743 0.94967 0.92882 1.25721 1.01273 0.96215 0.95383 1.70060 1.38950 1.46563 1.00119 0.85580 0.80051 0.78202 0.78242 1.18989 1.20993 1.20583 1.21902 0.88781 0.94966 0.98393 1.21809 0.92392 0.94823 1.09063 1.17148 0.82437 0.77515 0.73818 1.93198 1.92334 1.94018 1.36153 1.93378 1.58537 1.80948 1.80677 1.93179 1.93313 1.48520 1.81256 1.77230 0.99967 1.10347 1.22727 0.88896 0.88589 0.85164 0.75573 0.91732 0.91172 0.90247 0.94493 0.94347 0.91373 0.92851 0.95392 0.93247 0.95888 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.47 127.77 1.47 2.04 16 2 N -0.35 -6.19 4.01 -369.55 -1.48 -7.67 16 3 C 0.09 1.44 10.55 83.54 0.88 2.32 16 4 C -0.20 -5.02 4.67 -20.14 -0.09 -5.11 16 5 C 0.13 3.57 4.40 85.56 0.38 3.94 16 6 N -0.54 -19.24 3.72 -900.94 -3.35 -22.59 16 7 C 0.07 2.35 5.31 86.33 0.46 2.81 16 8 C -0.11 -4.28 6.09 30.65 0.19 -4.09 16 9 C -0.10 -4.88 5.02 30.68 0.15 -4.72 16 10 C 0.05 2.74 2.27 -11.49 -0.03 2.71 16 11 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 12 C -0.53 -29.94 8.56 25.60 0.22 -29.72 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.01 0.70 5.30 84.65 0.45 1.15 16 15 N -0.92 -54.53 11.35 21.45 0.24 -54.28 16 16 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 C 0.09 3.68 4.68 86.32 0.40 4.08 16 21 C -0.02 -0.47 6.56 43.10 0.28 -0.18 16 22 C 0.55 17.70 3.50 71.24 0.25 17.95 16 23 F -0.18 -5.37 17.30 44.97 0.78 -4.60 16 24 F -0.15 -5.74 14.84 44.97 0.67 -5.07 16 25 F -0.18 -6.04 17.25 44.97 0.78 -5.27 16 26 N -0.28 -7.48 12.50 -47.38 -0.59 -8.07 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.23 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 32 H 0.07 2.06 7.63 -2.39 -0.02 2.05 16 33 H 0.08 2.15 6.46 -2.38 -0.02 2.14 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 2.95 6.15 -2.39 -0.01 2.94 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 2.24 8.01 -2.39 -0.02 2.22 16 Total: -1.00 -72.08 343.98 5.11 -66.97 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.04 Total: 0.94 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 5.01 Total: -6.83 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -5.19 Total: -92.62 kcal Atomic # 9 Polarization: -17.15 SS G_CDS: 2.22 Total: -14.93 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.08 5.11 -66.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232088334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.946 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds