Wall clock time and date at job start Tue Mar 31 2020 11:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99776 * 2 1 4 4 C 1.52997 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47040 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47163 * 180.02562 * 5 4 3 7 7 C 1.34691 * 125.87201 * 124.99369 * 6 5 4 8 8 C 1.36625 * 107.59778 * 180.02562 * 7 6 5 9 9 C 1.48241 * 126.25017 * 180.02562 * 8 7 6 10 10 C 1.40134 * 119.52009 * 179.72816 * 9 8 7 11 11 C 1.38288 * 119.57280 * 180.27481 * 10 9 8 12 12 C 1.39142 * 118.64491 * 0.02562 * 11 10 9 13 13 O 1.35556 * 120.47862 * 180.02562 * 12 11 10 14 14 C 1.42900 * 116.99815 * 359.97438 * 13 12 11 15 15 C 1.41346 * 119.03959 * 359.97438 * 12 11 10 16 16 C 1.40968 * 119.83550 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99607 * 0.02562 * 16 15 12 18 18 C 1.40007 * 120.00364 * 180.02562 * 16 15 12 19 19 N 1.30793 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46810 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46758 * 119.99836 * 20 18 16 23 23 H 1.48498 * 109.46937 * 240.00046 * 20 18 16 24 24 N 1.32174 * 119.52246 * 0.02562 * 9 8 7 25 25 C 1.40956 * 107.49302 * 0.26542 * 8 7 6 26 26 N 1.30623 * 108.06938 * 359.55135 * 25 8 7 27 27 H 1.08996 * 109.47186 * 60.00194 * 1 2 3 28 28 H 1.09006 * 109.46465 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47077 * 299.99864 * 1 2 3 30 30 H 1.09001 * 109.46973 * 59.99865 * 3 2 1 31 31 H 1.08997 * 109.46927 * 300.00305 * 3 2 1 32 32 H 1.09001 * 109.47383 * 60.00000 * 4 3 2 33 33 H 1.08997 * 109.47356 * 299.99927 * 4 3 2 34 34 H 1.08988 * 109.47380 * 59.99967 * 5 4 3 35 35 H 1.09004 * 109.47006 * 299.99396 * 5 4 3 36 36 H 1.07999 * 126.19731 * 0.06490 * 7 6 5 37 37 H 1.08000 * 120.21009 * 0.27167 * 10 9 8 38 38 H 1.08003 * 120.67591 * 180.02562 * 11 10 9 39 39 H 1.08995 * 109.47219 * 60.00310 * 14 13 12 40 40 H 1.09007 * 109.47040 * 179.97438 * 14 13 12 41 41 H 1.08994 * 109.47497 * 299.99667 * 14 13 12 42 42 H 0.96999 * 119.99405 * 180.02562 * 19 18 16 43 43 H 1.08002 * 125.96148 * 179.69876 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 7 5.6180 2.4670 -0.0012 7 6 6.4535 3.0294 -0.8956 8 6 7.7277 2.6814 -0.5462 9 6 8.9695 3.0788 -1.2515 10 6 10.2095 2.6438 -0.7646 11 6 11.3690 3.0186 -1.4184 12 6 11.2670 3.8235 -2.5487 13 8 12.3795 4.2125 -3.2185 14 6 13.6353 3.7595 -2.7087 15 6 9.9865 4.2289 -2.9891 16 6 9.8637 5.0449 -4.1321 17 1 10.7467 5.3584 -4.6690 18 6 8.5971 5.4488 -4.5711 19 7 7.5277 5.0687 -3.9210 20 14 8.4345 6.5307 -6.0852 21 1 9.7836 6.8186 -6.6350 22 1 7.6222 5.8280 -7.1107 23 1 7.7685 7.8050 -5.7138 24 7 8.8916 3.8433 -2.3269 25 6 7.6452 1.8708 0.6040 26 7 6.3850 1.7524 0.9267 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8567 0.6441 -0.8908 33 1 3.8574 0.6438 0.8891 34 1 3.8363 3.1229 0.8903 35 1 3.8357 3.1240 -0.8896 36 1 6.1680 3.6446 -1.7360 37 1 10.2592 2.0198 0.1155 38 1 12.3341 2.6932 -1.0589 39 1 13.6571 2.6697 -2.7126 40 1 14.4410 4.1409 -3.3360 41 1 13.7656 4.1219 -1.6891 42 1 6.6502 5.3483 -4.2255 43 1 8.4787 1.4273 1.1285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242487257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:41 Heat of formation + Delta-G solvation = 26.192566 kcal Electronic energy + Delta-G solvation = -25461.733851 eV Core-core repulsion = 21702.409583 eV Total energy + Delta-G solvation = -3759.324269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60656 -38.75094 -38.21834 -36.58457 -34.69543 -33.61150 -31.03777 -30.57058 -30.29197 -28.31066 -27.20722 -26.45131 -25.72757 -24.64598 -22.25400 -21.78016 -21.48110 -19.86172 -19.41904 -17.57977 -16.83832 -16.57482 -16.45252 -16.15735 -15.61526 -15.25385 -14.84796 -14.70063 -14.67914 -14.17645 -13.83710 -13.70699 -13.10764 -12.81552 -12.51756 -12.45553 -12.35592 -12.08414 -11.96301 -11.91349 -11.35622 -11.31112 -11.22720 -11.22177 -11.08478 -10.62466 -10.49583 -10.39138 -10.18428 -9.94302 -9.70657 -9.43864 -8.91791 -8.27657 -8.03284 -7.69913 -6.67114 -6.41859 -4.35847 2.26241 2.64421 2.82844 2.88468 3.11523 3.16864 3.17449 3.54068 3.80126 3.98242 4.48145 4.61913 4.79465 4.85115 4.90425 5.00721 5.05692 5.11430 5.19298 5.30126 5.37664 5.45720 5.62616 5.74915 5.76455 5.86702 5.90750 5.96268 5.97766 6.01724 6.08914 6.25459 6.34570 6.54605 6.87405 6.89310 6.99760 7.11135 7.23340 7.44482 7.54433 7.67126 7.97029 8.21735 8.26357 8.35883 8.74667 9.06039 10.08223 10.32137 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.003199 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.606438 B = 8749.742227 C =10649.293951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.131 4.131 5 C 0.144 3.856 6 N -0.384 5.384 7 C 0.095 3.905 8 C -0.169 4.169 9 C 0.197 3.803 10 C -0.275 4.275 11 C -0.143 4.143 12 C -0.038 4.038 13 O -0.310 6.310 14 C 0.034 3.966 15 C 0.258 3.742 16 C -0.414 4.414 17 H 0.090 0.910 18 C 0.070 3.930 19 N -0.721 5.721 20 Si 0.907 3.093 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.274 1.274 24 N -0.459 5.459 25 C 0.063 3.937 26 N -0.314 5.314 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.189 0.811 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.268 0.732 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 -3.810 5.208 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.170 4.170 5 C 0.022 3.978 6 N -0.166 5.166 7 C -0.051 4.051 8 C -0.181 4.181 9 C 0.055 3.945 10 C -0.299 4.299 11 C -0.168 4.168 12 C -0.086 4.086 13 O -0.223 6.223 14 C -0.062 4.062 15 C 0.130 3.870 16 C -0.446 4.446 17 H 0.108 0.892 18 C -0.154 4.154 19 N -0.344 5.344 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.200 1.200 24 N -0.174 5.174 25 C -0.125 4.125 26 N -0.134 5.134 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.206 0.794 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.671 -4.039 5.537 12.682 hybrid contribution 1.331 0.557 -0.630 1.574 sum -9.340 -3.482 4.907 11.110 Atomic orbital electron populations 1.22744 0.80963 1.02794 0.99987 1.87894 1.19732 1.27910 1.95427 1.22425 0.93554 0.84849 1.00420 1.21761 0.92865 0.97195 1.05140 1.21385 0.75438 0.97296 1.03695 1.48271 1.05752 1.40504 1.22073 1.22926 0.89782 0.97602 0.94800 1.18785 0.92439 1.07194 0.99640 1.18944 0.88992 0.94175 0.92409 1.20873 0.92250 1.11931 1.04830 1.20846 0.97737 1.01325 0.96842 1.20297 0.87498 1.04514 0.96331 1.85936 1.12173 1.71571 1.52654 1.22736 0.85790 0.98730 0.98969 1.18104 0.83158 0.92501 0.93283 1.19524 0.93513 1.24199 1.07401 0.89211 1.26017 0.95642 0.95930 0.97837 1.70152 0.98398 1.32063 1.33781 0.86271 0.79540 0.79759 0.81270 1.18354 1.19970 1.19970 1.68894 1.27987 1.13903 1.06649 1.23890 0.94213 0.98173 0.96215 1.77033 1.03401 1.18580 1.14432 0.94005 0.89620 0.94059 0.92988 0.92947 0.90396 0.89596 0.90131 0.88556 0.79395 0.88553 0.87987 0.94250 0.89996 0.94246 0.92074 0.80386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.40 10.70 -35.23 -0.38 -4.77 16 3 C 0.06 0.62 5.94 37.16 0.22 0.84 16 4 C -0.13 -1.53 5.76 -26.73 -0.15 -1.68 16 5 C 0.14 1.72 6.50 -4.04 -0.03 1.70 16 6 N -0.38 -6.43 3.67 -61.09 -0.22 -6.66 16 7 C 0.09 1.85 11.14 -16.88 -0.19 1.66 16 8 C -0.17 -3.59 6.06 -105.34 -0.64 -4.22 16 9 C 0.20 4.79 6.76 -82.90 -0.56 4.23 16 10 C -0.28 -6.22 9.61 -38.85 -0.37 -6.60 16 11 C -0.14 -3.24 9.11 -39.23 -0.36 -3.60 16 12 C -0.04 -0.96 6.74 -38.06 -0.26 -1.21 16 13 O -0.31 -7.12 9.61 -18.36 -0.18 -7.29 16 14 C 0.03 0.57 9.83 101.05 0.99 1.57 16 15 C 0.26 7.06 6.56 -84.86 -0.56 6.50 16 16 C -0.41 -11.12 8.94 -37.89 -0.34 -11.46 16 17 H 0.09 2.36 7.31 -52.49 -0.38 1.98 16 18 C 0.07 1.73 5.50 -17.33 -0.10 1.64 16 19 N -0.72 -18.09 11.45 55.55 0.64 -17.46 16 20 Si 0.91 18.44 29.56 -169.99 -5.02 13.42 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 N -0.46 -12.29 7.53 -7.56 -0.06 -12.35 16 25 C 0.06 1.16 11.40 -17.04 -0.19 0.97 16 26 N -0.31 -5.68 12.37 30.82 0.38 -5.30 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.08 0.84 8.14 -51.94 -0.42 0.42 16 35 H 0.10 0.96 8.07 -51.93 -0.42 0.55 16 36 H 0.19 3.73 8.06 -52.49 -0.42 3.30 16 37 H 0.10 1.89 7.00 -52.49 -0.37 1.52 16 38 H 0.10 1.98 6.43 -52.48 -0.34 1.65 16 39 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 40 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 41 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 42 H 0.27 6.02 8.29 -40.82 -0.34 5.68 16 43 H 0.18 2.81 7.31 -52.49 -0.38 2.43 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -31.68 368.20 -6.76 -38.43 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.05 Total: 4.76 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.41 Total: -8.33 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.74 Total: -41.76 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.55 Total: -12.07 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.68 -6.76 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242487257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.626 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds