Wall clock time and date at job start Tue Mar 31 2020 11:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99776 * 2 1 4 4 C 1.52997 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47040 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47163 * 180.02562 * 5 4 3 7 7 C 1.34691 * 125.87201 * 124.99369 * 6 5 4 8 8 C 1.36625 * 107.59778 * 180.02562 * 7 6 5 9 9 C 1.48241 * 126.25017 * 180.02562 * 8 7 6 10 10 C 1.40134 * 119.52009 * 179.72816 * 9 8 7 11 11 C 1.38288 * 119.57280 * 180.27481 * 10 9 8 12 12 C 1.39142 * 118.64491 * 0.02562 * 11 10 9 13 13 O 1.35556 * 120.47862 * 180.02562 * 12 11 10 14 14 C 1.42900 * 116.99815 * 359.97438 * 13 12 11 15 15 C 1.41346 * 119.03959 * 359.97438 * 12 11 10 16 16 C 1.40968 * 119.83550 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99607 * 0.02562 * 16 15 12 18 18 C 1.40007 * 120.00364 * 180.02562 * 16 15 12 19 19 N 1.30793 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46810 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46758 * 119.99836 * 20 18 16 23 23 H 1.48498 * 109.46937 * 240.00046 * 20 18 16 24 24 N 1.32174 * 119.52246 * 0.02562 * 9 8 7 25 25 C 1.40956 * 107.49302 * 0.26542 * 8 7 6 26 26 N 1.30623 * 108.06938 * 359.55135 * 25 8 7 27 27 H 1.08996 * 109.47186 * 60.00194 * 1 2 3 28 28 H 1.09006 * 109.46465 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47077 * 299.99864 * 1 2 3 30 30 H 1.09001 * 109.46973 * 59.99865 * 3 2 1 31 31 H 1.08997 * 109.46927 * 300.00305 * 3 2 1 32 32 H 1.09001 * 109.47383 * 60.00000 * 4 3 2 33 33 H 1.08997 * 109.47356 * 299.99927 * 4 3 2 34 34 H 1.08988 * 109.47380 * 59.99967 * 5 4 3 35 35 H 1.09004 * 109.47006 * 299.99396 * 5 4 3 36 36 H 1.07999 * 126.19731 * 0.06490 * 7 6 5 37 37 H 1.08000 * 120.21009 * 0.27167 * 10 9 8 38 38 H 1.08003 * 120.67591 * 180.02562 * 11 10 9 39 39 H 1.08995 * 109.47219 * 60.00310 * 14 13 12 40 40 H 1.09007 * 109.47040 * 179.97438 * 14 13 12 41 41 H 1.08994 * 109.47497 * 299.99667 * 14 13 12 42 42 H 0.96999 * 119.99405 * 180.02562 * 19 18 16 43 43 H 1.08002 * 125.96148 * 179.69876 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 7 5.6180 2.4670 -0.0012 7 6 6.4535 3.0294 -0.8956 8 6 7.7277 2.6814 -0.5462 9 6 8.9695 3.0788 -1.2515 10 6 10.2095 2.6438 -0.7646 11 6 11.3690 3.0186 -1.4184 12 6 11.2670 3.8235 -2.5487 13 8 12.3795 4.2125 -3.2185 14 6 13.6353 3.7595 -2.7087 15 6 9.9865 4.2289 -2.9891 16 6 9.8637 5.0449 -4.1321 17 1 10.7467 5.3584 -4.6690 18 6 8.5971 5.4488 -4.5711 19 7 7.5277 5.0687 -3.9210 20 14 8.4345 6.5307 -6.0852 21 1 9.7836 6.8186 -6.6350 22 1 7.6222 5.8280 -7.1107 23 1 7.7685 7.8050 -5.7138 24 7 8.8916 3.8433 -2.3269 25 6 7.6452 1.8708 0.6040 26 7 6.3850 1.7524 0.9267 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8567 0.6441 -0.8908 33 1 3.8574 0.6438 0.8891 34 1 3.8363 3.1229 0.8903 35 1 3.8357 3.1240 -0.8896 36 1 6.1680 3.6446 -1.7360 37 1 10.2592 2.0198 0.1155 38 1 12.3341 2.6932 -1.0589 39 1 13.6571 2.6697 -2.7126 40 1 14.4410 4.1409 -3.3360 41 1 13.7656 4.1219 -1.6891 42 1 6.6502 5.3483 -4.2255 43 1 8.4787 1.4273 1.1285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242487257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:40 Heat of formation + Delta-G solvation = 6.217567 kcal Electronic energy + Delta-G solvation = -25462.600032 eV Core-core repulsion = 21702.409583 eV Total energy + Delta-G solvation = -3760.190450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04815 -40.49382 -38.98530 -38.29626 -35.86765 -35.34862 -32.46338 -32.20714 -31.90363 -29.85520 -28.16132 -27.99023 -27.09711 -25.82623 -23.54109 -23.41990 -22.93876 -21.27996 -20.96275 -19.31239 -18.32074 -18.06838 -17.39277 -17.21509 -17.03992 -16.45428 -16.30896 -16.23234 -15.91475 -15.52179 -15.11867 -14.90711 -14.72565 -14.43545 -14.04557 -13.98553 -13.50057 -13.27538 -13.24832 -12.97381 -12.87549 -12.82995 -12.68102 -12.46738 -12.10986 -12.08463 -12.06486 -11.93787 -11.67923 -11.40198 -11.22302 -10.64275 -10.30410 -9.96267 -9.80770 -9.54814 -8.41078 -8.23644 -6.27815 0.60891 1.05361 1.16600 1.44691 1.52768 1.58642 1.59384 2.14390 2.29399 2.78134 2.92154 3.00768 3.59534 3.90563 3.99670 4.02497 4.08419 4.15718 4.27560 4.32124 4.35194 4.38680 4.43585 4.47451 4.51441 4.54163 4.55606 4.65964 4.71666 4.76201 4.85261 4.90268 4.99383 5.11696 5.16921 5.30063 5.40673 5.60115 5.72292 5.81966 6.13519 6.20788 6.23384 6.39383 6.48805 6.78043 6.88804 7.24060 8.22601 8.52602 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.003199 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.606438 B = 8749.742227 C =10649.293951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.068 3.932 4 C -0.121 4.121 5 C 0.134 3.866 6 N -0.373 5.373 7 C 0.096 3.904 8 C -0.202 4.202 9 C 0.176 3.824 10 C -0.274 4.274 11 C -0.142 4.142 12 C -0.058 4.058 13 O -0.336 6.336 14 C 0.026 3.974 15 C 0.219 3.781 16 C -0.453 4.453 17 H 0.080 0.920 18 C 0.029 3.971 19 N -0.748 5.748 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.265 1.265 24 N -0.483 5.483 25 C 0.065 3.935 26 N -0.317 5.317 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.181 0.819 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.050 0.950 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.278 0.722 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 -3.894 5.908 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.009 4.009 4 C -0.160 4.160 5 C 0.014 3.986 6 N -0.155 5.155 7 C -0.052 4.052 8 C -0.214 4.214 9 C 0.034 3.966 10 C -0.297 4.297 11 C -0.166 4.166 12 C -0.107 4.107 13 O -0.250 6.250 14 C -0.069 4.069 15 C 0.091 3.909 16 C -0.485 4.485 17 H 0.098 0.902 18 C -0.193 4.193 19 N -0.371 5.371 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.189 1.189 24 N -0.199 5.199 25 C -0.122 4.122 26 N -0.137 5.137 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.198 0.802 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.069 0.931 40 H 0.130 0.870 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.506 -4.147 6.272 13.745 hybrid contribution 1.581 0.485 -0.731 1.808 sum -9.925 -3.662 5.542 11.942 Atomic orbital electron populations 1.22935 0.79151 1.03809 1.01121 1.87842 1.21803 1.28883 1.95693 1.22425 0.91684 0.84713 1.02107 1.21616 0.94741 0.96332 1.03265 1.21821 0.72700 0.98119 1.05939 1.48606 1.07226 1.38988 1.20685 1.22801 0.90095 0.97446 0.94896 1.18867 0.92077 1.09270 1.01146 1.19489 0.90999 0.93905 0.92178 1.21294 0.91741 1.11291 1.05385 1.21220 0.99341 1.00226 0.95855 1.20366 0.87733 1.05260 0.97297 1.85875 1.13438 1.72200 1.53459 1.23083 0.83919 0.99656 1.00278 1.18550 0.84729 0.93517 0.94152 1.19671 0.94253 1.26102 1.08454 0.90226 1.26795 0.94770 0.97011 1.00711 1.70203 0.98967 1.32748 1.35135 0.85167 0.79222 0.78003 0.77331 1.18729 1.19030 1.18932 1.68833 1.28446 1.14892 1.07703 1.24182 0.95052 0.97568 0.95387 1.77006 1.03381 1.18633 1.14711 0.92983 0.88824 0.92751 0.91086 0.91378 0.92405 0.91283 0.87820 0.86396 0.80234 0.85374 0.84639 0.93147 0.86966 0.93110 0.91149 0.77964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.92 10.70 -148.98 -1.59 -10.52 16 3 C 0.07 1.15 5.94 71.98 0.43 1.58 16 4 C -0.12 -2.69 5.76 30.59 0.18 -2.51 16 5 C 0.13 2.98 6.50 86.38 0.56 3.55 16 6 N -0.37 -12.20 3.67 -347.18 -1.27 -13.47 16 7 C 0.10 3.75 11.14 83.88 0.93 4.69 16 8 C -0.20 -8.59 6.06 -20.33 -0.12 -8.71 16 9 C 0.18 8.69 6.76 42.21 0.29 8.98 16 10 C -0.27 -12.20 9.61 22.74 0.22 -11.98 16 11 C -0.14 -6.34 9.11 22.50 0.21 -6.13 16 12 C -0.06 -2.99 6.74 23.25 0.16 -2.83 16 13 O -0.34 -15.59 9.61 -88.62 -0.85 -16.44 16 14 C 0.03 0.83 9.83 113.37 1.11 1.94 16 15 C 0.22 12.47 6.56 40.30 0.26 12.74 16 16 C -0.45 -25.41 8.94 23.37 0.21 -25.20 16 17 H 0.08 4.43 7.31 -2.91 -0.02 4.40 16 18 C 0.03 1.46 5.50 85.28 0.47 1.93 16 19 N -0.75 -38.60 11.45 21.84 0.25 -38.35 16 20 Si 0.98 38.63 29.56 68.60 2.03 40.66 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 22 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 N -0.48 -26.80 7.53 -177.84 -1.34 -28.14 16 25 C 0.07 2.35 11.40 85.54 0.98 3.32 16 26 N -0.32 -11.08 12.37 -56.41 -0.70 -11.77 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.12 2.13 8.07 -2.38 -0.02 2.11 16 36 H 0.18 7.34 8.06 -2.91 -0.02 7.31 16 37 H 0.13 4.74 7.00 -2.91 -0.02 4.72 16 38 H 0.14 4.96 6.43 -2.91 -0.02 4.94 16 39 H 0.05 1.49 7.69 -2.39 -0.02 1.48 16 40 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 41 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 42 H 0.28 12.70 8.29 -92.71 -0.77 11.93 16 43 H 0.20 5.97 7.31 -2.91 -0.02 5.95 16 Total: -1.00 -71.60 368.20 4.66 -66.94 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 1.02 Total: 28.16 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 7.12 Total: -17.07 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -3.06 Total: -91.74 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -2.45 Total: -26.96 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -71.60 4.66 -66.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242487257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.158 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds