Wall clock time and date at job start Tue Mar 31 2020 11:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.47626 * 215.00557 * 9 8 7 11 11 O 1.42900 * 109.47270 * 335.00720 * 9 8 7 12 12 C 1.53003 * 109.46999 * 95.00494 * 9 8 7 13 13 N 1.46501 * 109.47577 * 175.00011 * 12 9 8 14 14 C 1.35314 * 125.86803 * 124.99863 * 13 12 9 15 15 C 1.35354 * 106.17348 * 180.02562 * 14 13 12 16 16 C 1.50700 * 126.75072 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46706 * 124.99662 * 16 15 14 18 18 C 1.50704 * 109.46838 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99956 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00107 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00015 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99742 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47283 * 90.00148 * 22 20 18 24 24 H 1.48500 * 109.47249 * 210.00097 * 22 20 18 25 25 H 1.48501 * 109.47345 * 330.00093 * 22 20 18 26 26 N 1.33772 * 106.49531 * 359.97438 * 15 14 13 27 27 N 1.28637 * 108.88777 * 359.73712 * 26 15 14 28 28 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 30 30 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 31 31 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 32 32 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 33 33 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 35 35 H 0.96705 * 113.99892 * 59.99968 * 11 9 8 36 36 H 1.08998 * 109.47189 * 295.00252 * 12 9 8 37 37 H 1.09001 * 109.47122 * 54.99773 * 12 9 8 38 38 H 1.07997 * 126.90837 * 0.02562 * 14 13 12 39 39 H 1.08994 * 109.47057 * 244.99883 * 16 15 14 40 40 H 1.09008 * 109.47019 * 5.00251 * 16 15 14 41 41 H 1.08994 * 109.47543 * 299.99923 * 17 16 15 42 42 H 1.09001 * 109.47271 * 60.00376 * 17 16 15 43 43 H 0.97003 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 1 3.7466 -0.7420 -0.5890 11 8 5.5366 0.2893 -0.5702 12 6 4.4273 -0.4728 1.4370 13 7 5.1237 -1.7617 1.4289 14 6 6.2596 -2.0533 2.1039 15 6 6.5500 -3.3432 1.8138 16 6 7.7240 -4.1395 2.3223 17 6 7.2201 -5.4194 2.9922 18 6 8.3941 -6.2155 3.5013 19 1 9.3991 -5.8457 3.3606 20 6 8.1853 -7.4164 4.1457 21 7 9.2099 -8.1114 4.5895 22 14 6.4472 -8.0563 4.3884 23 1 6.0625 -8.8972 3.2264 24 1 6.3879 -8.8699 5.6293 25 1 5.5093 -6.9106 4.5024 26 7 5.5898 -3.7719 0.9869 27 7 4.7569 -2.8130 0.7832 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3203 -0.0010 32 1 1.3339 4.5114 0.0026 33 1 3.7920 4.6381 -0.0024 34 1 5.1344 2.5754 -0.0023 35 1 6.0453 0.9615 -0.0963 36 1 5.0118 0.2524 2.0030 37 1 3.4482 -0.5918 1.9011 38 1 6.8215 -1.3903 2.7450 39 1 8.3760 -4.3984 1.4881 40 1 8.2799 -3.5447 3.0471 41 1 6.5681 -5.1605 3.8264 42 1 6.6642 -6.0143 2.2675 43 1 9.0629 -8.9561 5.0432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254141778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:39 Heat of formation + Delta-G solvation = 34.711302 kcal Electronic energy + Delta-G solvation = -25548.428356 eV Core-core repulsion = 21789.473487 eV Total energy + Delta-G solvation = -3758.954869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86624 -40.91613 -38.50249 -37.30147 -34.80601 -33.58815 -32.21842 -31.87967 -30.71052 -29.69336 -28.73314 -27.72499 -25.41586 -24.90964 -22.63692 -22.03595 -21.62752 -21.30031 -19.81260 -18.87880 -17.64814 -16.95965 -16.77791 -16.57443 -16.43219 -16.16967 -15.47008 -15.08958 -14.97752 -14.50767 -14.40656 -14.12685 -13.97288 -13.31160 -13.29900 -13.02359 -12.67537 -12.59077 -12.41185 -12.33624 -11.85266 -11.63027 -11.60523 -11.50114 -11.19851 -10.93220 -10.82717 -10.53886 -10.09205 -9.83594 -9.64557 -9.58897 -9.40197 -9.08612 -8.69988 -8.54214 -8.42664 -5.95062 -3.92222 0.69305 0.88825 1.94373 2.47523 2.76444 3.07561 3.17104 3.42382 3.48346 3.55908 3.82693 4.02202 4.24910 4.30041 4.39503 4.50951 4.56656 4.60094 4.69867 4.75743 4.83209 4.84598 4.99755 5.04121 5.08761 5.23740 5.35031 5.40398 5.48066 5.58773 5.76065 5.84664 5.95108 5.97896 6.19688 6.46964 6.50221 6.66062 6.83213 6.85332 6.98991 7.14588 7.44632 7.58270 7.89622 8.62271 8.96165 9.09600 9.68575 11.18219 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.002459 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.405006 B =11384.322344 C =12133.801209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.142 3.858 4 C -0.207 4.207 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.070 4.070 8 C -0.154 4.154 9 C 0.150 3.850 10 H 0.130 0.870 11 O -0.542 6.542 12 C 0.095 3.905 13 N -0.292 5.292 14 C -0.066 4.066 15 C 0.006 3.994 16 C -0.024 4.024 17 C -0.006 4.006 18 C -0.518 4.518 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.906 5.906 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.266 1.266 26 N -0.262 5.262 27 N -0.091 5.091 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.371 0.629 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.185 0.815 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.022 0.978 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 29.698 -8.363 35.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.096 3.904 4 C -0.226 4.226 5 C -0.093 4.093 6 C -0.173 4.173 7 C -0.088 4.088 8 C -0.156 4.156 9 C 0.090 3.910 10 H 0.147 0.853 11 O -0.347 6.347 12 C -0.027 4.027 13 N -0.086 5.086 14 C -0.215 4.215 15 C -0.132 4.132 16 C -0.063 4.063 17 C -0.044 4.044 18 C -0.556 4.556 19 H 0.091 0.909 20 C -0.134 4.134 21 N -0.545 5.545 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.191 1.191 26 N -0.129 5.129 27 N -0.070 5.070 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.219 0.781 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.202 0.798 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.869 28.285 -9.643 35.342 hybrid contribution -0.382 0.881 1.410 1.706 sum -19.251 29.166 -8.233 35.903 Atomic orbital electron populations 1.23129 0.77794 1.04577 1.01326 1.86144 1.21847 1.26270 1.88082 1.18800 0.91421 0.84744 0.95418 1.21276 1.00281 0.92232 1.08795 1.21022 0.94767 0.97082 0.96479 1.21048 0.93913 0.98402 1.03907 1.20760 1.00116 0.90901 0.97047 1.19692 0.91164 0.96007 1.08724 1.20877 0.83587 0.93942 0.92632 0.85294 1.86790 1.28549 1.62838 1.56560 1.22685 0.99375 0.81160 0.99493 1.47026 1.18423 1.11099 1.32093 1.23330 0.92946 0.99522 1.05706 1.22601 0.99506 0.92576 0.98471 1.19982 0.90710 0.96163 0.99434 1.19508 0.97168 0.92333 0.95418 1.21147 0.93621 1.04467 1.36376 0.90871 1.24989 0.96738 0.96578 0.95097 1.69918 1.30149 1.14720 1.39701 0.86781 0.85776 0.79219 0.77569 1.20150 1.21593 1.19074 1.75082 1.02227 1.20325 1.15274 1.78217 1.21920 0.89979 1.16863 0.87726 0.92481 0.92484 0.85110 0.85546 0.85485 0.85122 0.78083 0.87694 0.87624 0.79825 0.90732 0.90988 0.96871 0.95999 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.79 9.63 -19.42 -0.19 -2.97 16 3 C 0.14 1.19 6.66 -39.22 -0.26 0.93 16 4 C -0.21 -1.37 9.04 -39.43 -0.36 -1.72 16 5 C -0.08 -0.43 10.04 -39.60 -0.40 -0.83 16 6 C -0.15 -0.88 10.04 -39.56 -0.40 -1.27 16 7 C -0.07 -0.45 9.30 -39.61 -0.37 -0.81 16 8 C -0.15 -1.27 5.08 -104.48 -0.53 -1.80 16 9 C 0.15 1.49 3.02 -27.88 -0.08 1.40 16 10 H 0.13 1.64 7.55 -51.93 -0.39 1.25 16 11 O -0.54 -5.59 12.94 -35.23 -0.46 -6.04 16 12 C 0.10 0.92 6.07 -4.04 -0.02 0.90 16 13 N -0.29 -4.27 3.38 -61.26 -0.21 -4.48 16 14 C -0.07 -1.00 11.49 -17.04 -0.20 -1.19 16 15 C 0.01 0.12 6.50 -82.78 -0.54 -0.42 16 16 C -0.02 -0.50 5.73 -27.88 -0.16 -0.66 16 17 C -0.01 -0.16 4.02 -27.88 -0.11 -0.28 16 18 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 19 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 21 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 22 Si 0.88 23.02 27.47 -169.99 -4.67 18.35 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.27 -6.85 6.54 56.52 0.37 -6.48 16 26 N -0.26 -5.62 12.40 33.29 0.41 -5.21 16 27 N -0.09 -1.70 12.83 60.35 0.77 -0.92 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.13 0.61 6.30 -52.49 -0.33 0.28 16 32 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 34 H 0.13 0.53 6.41 -52.49 -0.34 0.19 16 35 H 0.37 2.16 7.33 45.56 0.33 2.49 16 36 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.07 1.36 8.12 -51.92 -0.42 0.94 16 41 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 42 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -38.11 364.08 -6.19 -44.29 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.25 Total: -2.40 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.86 Total: -18.26 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 1.75 Total: -38.46 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.64 Total: -9.02 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.67 Total: 18.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.11 -6.19 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254141778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.006 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds