Wall clock time and date at job start Tue Mar 31 2020 11:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.47626 * 215.00557 * 9 8 7 11 11 O 1.42900 * 109.47270 * 335.00720 * 9 8 7 12 12 C 1.53003 * 109.46999 * 95.00494 * 9 8 7 13 13 N 1.46501 * 109.47577 * 175.00011 * 12 9 8 14 14 C 1.35314 * 125.86803 * 124.99863 * 13 12 9 15 15 C 1.35354 * 106.17348 * 180.02562 * 14 13 12 16 16 C 1.50700 * 126.75072 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46706 * 124.99662 * 16 15 14 18 18 C 1.50704 * 109.46838 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99956 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00107 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00015 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99742 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47283 * 90.00148 * 22 20 18 24 24 H 1.48500 * 109.47249 * 210.00097 * 22 20 18 25 25 H 1.48501 * 109.47345 * 330.00093 * 22 20 18 26 26 N 1.33772 * 106.49531 * 359.97438 * 15 14 13 27 27 N 1.28637 * 108.88777 * 359.73712 * 26 15 14 28 28 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 30 30 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 31 31 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 32 32 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 33 33 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 35 35 H 0.96705 * 113.99892 * 59.99968 * 11 9 8 36 36 H 1.08998 * 109.47189 * 295.00252 * 12 9 8 37 37 H 1.09001 * 109.47122 * 54.99773 * 12 9 8 38 38 H 1.07997 * 126.90837 * 0.02562 * 14 13 12 39 39 H 1.08994 * 109.47057 * 244.99883 * 16 15 14 40 40 H 1.09008 * 109.47019 * 5.00251 * 16 15 14 41 41 H 1.08994 * 109.47543 * 299.99923 * 17 16 15 42 42 H 1.09001 * 109.47271 * 60.00376 * 17 16 15 43 43 H 0.97003 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 1 3.7466 -0.7420 -0.5890 11 8 5.5366 0.2893 -0.5702 12 6 4.4273 -0.4728 1.4370 13 7 5.1237 -1.7617 1.4289 14 6 6.2596 -2.0533 2.1039 15 6 6.5500 -3.3432 1.8138 16 6 7.7240 -4.1395 2.3223 17 6 7.2201 -5.4194 2.9922 18 6 8.3941 -6.2155 3.5013 19 1 9.3991 -5.8457 3.3606 20 6 8.1853 -7.4164 4.1457 21 7 9.2099 -8.1114 4.5895 22 14 6.4472 -8.0563 4.3884 23 1 6.0625 -8.8972 3.2264 24 1 6.3879 -8.8699 5.6293 25 1 5.5093 -6.9106 4.5024 26 7 5.5898 -3.7719 0.9869 27 7 4.7569 -2.8130 0.7832 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3203 -0.0010 32 1 1.3339 4.5114 0.0026 33 1 3.7920 4.6381 -0.0024 34 1 5.1344 2.5754 -0.0023 35 1 6.0453 0.9615 -0.0963 36 1 5.0118 0.2524 2.0030 37 1 3.4482 -0.5918 1.9011 38 1 6.8215 -1.3903 2.7450 39 1 8.3760 -4.3984 1.4881 40 1 8.2799 -3.5447 3.0471 41 1 6.5681 -5.1605 3.8264 42 1 6.6642 -6.0143 2.2675 43 1 9.0629 -8.9561 5.0432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254141778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:38 Heat of formation + Delta-G solvation = 6.523286 kcal Electronic energy + Delta-G solvation = -25549.650680 eV Core-core repulsion = 21789.473487 eV Total energy + Delta-G solvation = -3760.177193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.15791 -41.43343 -39.14410 -37.88142 -36.34227 -35.14174 -33.86605 -32.81031 -31.32760 -31.12681 -29.65970 -28.16884 -27.29725 -25.70873 -23.41403 -23.08799 -22.87446 -22.32217 -21.30045 -19.45853 -19.00382 -18.39169 -17.63895 -17.53172 -17.28909 -16.69155 -16.35822 -16.10982 -15.82658 -15.79533 -15.40828 -15.19735 -14.92537 -14.71685 -14.61951 -14.33587 -13.80825 -13.62049 -13.23596 -13.09522 -13.00055 -12.85842 -12.61265 -12.33883 -12.18717 -12.16712 -12.05552 -11.95659 -11.80263 -11.49023 -11.39708 -11.32003 -10.83748 -10.74214 -9.96548 -9.90257 -9.19231 -8.28279 -6.30210 0.21866 0.42815 0.73326 1.33968 1.35789 1.47327 1.48260 1.63124 2.32102 2.36539 2.69999 3.07309 3.14868 3.38547 3.49370 3.71654 3.73839 3.87399 4.03757 4.07292 4.23025 4.25061 4.27702 4.34746 4.36940 4.40969 4.54094 4.62079 4.69579 4.70926 4.75827 4.93661 4.98623 5.01726 5.28012 5.32357 5.41704 5.46331 5.54235 5.59735 5.68794 5.74095 5.80071 6.29903 6.36845 6.64631 6.76662 7.34164 7.61697 8.87987 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.002459 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.405006 B =11384.322344 C =12133.801209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.077 4.077 6 C -0.157 4.157 7 C -0.071 4.071 8 C -0.169 4.169 9 C 0.161 3.839 10 H 0.091 0.909 11 O -0.562 6.562 12 C 0.089 3.911 13 N -0.278 5.278 14 C -0.033 4.033 15 C -0.031 4.031 16 C -0.012 4.012 17 C 0.001 3.999 18 C -0.525 4.525 19 H 0.046 0.954 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.943 3.057 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.259 1.259 26 N -0.311 5.311 27 N -0.116 5.116 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.391 0.609 36 H 0.151 0.849 37 H 0.110 0.890 38 H 0.236 0.764 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.012 0.988 42 H 0.005 0.995 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.023 33.113 -7.619 38.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.076 3.924 4 C -0.233 4.233 5 C -0.095 4.095 6 C -0.175 4.175 7 C -0.089 4.089 8 C -0.170 4.170 9 C 0.101 3.899 10 H 0.108 0.892 11 O -0.371 6.371 12 C -0.031 4.031 13 N -0.072 5.072 14 C -0.184 4.184 15 C -0.170 4.170 16 C -0.052 4.052 17 C -0.037 4.037 18 C -0.563 4.563 19 H 0.064 0.936 20 C -0.187 4.187 21 N -0.587 5.587 22 Si 0.767 3.233 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.183 1.183 26 N -0.178 5.178 27 N -0.095 5.095 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.242 0.758 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.252 0.748 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.023 0.977 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.183 31.733 -8.914 38.649 hybrid contribution 0.039 -0.014 1.135 1.136 sum -20.144 31.719 -7.779 38.371 Atomic orbital electron populations 1.23308 0.76479 1.05179 1.02474 1.86106 1.23463 1.27207 1.88416 1.19073 0.91857 0.85093 0.96380 1.21512 1.01120 0.92053 1.08598 1.21395 0.95279 0.97565 0.95278 1.21398 0.94050 0.99174 1.02918 1.21053 1.01391 0.90270 0.96187 1.19627 0.91035 0.95822 1.10546 1.20514 0.83543 0.94013 0.91825 0.89158 1.86749 1.28949 1.63906 1.57489 1.23168 1.00134 0.79615 1.00218 1.47410 1.18012 1.11593 1.30142 1.23918 0.92118 0.98346 1.03976 1.22453 0.99618 0.94580 1.00344 1.19716 0.91493 0.94721 0.99230 1.19364 0.95359 0.93922 0.95034 1.21468 0.93833 1.05003 1.36024 0.93573 1.25848 1.00843 0.96998 0.95014 1.70038 1.32394 1.15435 1.40851 0.85771 0.80775 0.78832 0.77896 1.19894 1.20253 1.18303 1.75009 1.03569 1.22297 1.16891 1.78135 1.22114 0.90897 1.18328 0.87508 0.91126 0.91485 0.83692 0.83236 0.83189 0.82910 0.75803 0.83141 0.87200 0.74785 0.91852 0.88752 0.96955 0.97679 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.11 9.63 -92.39 -0.89 -7.00 16 3 C 0.12 1.93 6.66 22.51 0.15 2.08 16 4 C -0.21 -2.43 9.04 22.37 0.20 -2.23 16 5 C -0.08 -0.66 10.04 22.26 0.22 -0.43 16 6 C -0.16 -1.27 10.04 22.28 0.22 -1.04 16 7 C -0.07 -0.70 9.30 22.25 0.21 -0.49 16 8 C -0.17 -2.52 5.08 -19.77 -0.10 -2.62 16 9 C 0.16 3.03 3.02 29.85 0.09 3.12 16 10 H 0.09 2.40 7.55 -2.39 -0.02 2.39 16 11 O -0.56 -10.62 12.94 -148.98 -1.93 -12.55 16 12 C 0.09 1.49 6.07 86.38 0.52 2.02 16 13 N -0.28 -7.59 3.38 -347.73 -1.18 -8.76 16 14 C -0.03 -0.90 11.49 83.49 0.96 0.06 16 15 C -0.03 -1.19 6.50 41.60 0.27 -0.92 16 16 C -0.01 -0.52 5.73 29.85 0.17 -0.35 16 17 C 0.00 0.06 4.02 29.85 0.12 0.18 16 18 C -0.53 -31.42 9.66 25.60 0.25 -31.17 16 19 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 20 C 0.01 0.61 5.47 84.66 0.46 1.08 16 21 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 22 Si 0.94 47.82 27.47 68.60 1.88 49.71 16 23 H -0.27 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 26 N -0.31 -13.49 12.40 -48.60 -0.60 -14.09 16 27 N -0.12 -4.34 12.83 37.02 0.48 -3.86 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 31 H 0.15 1.08 6.30 -2.91 -0.02 1.06 16 32 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.15 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.15 0.67 6.41 -2.91 -0.02 0.65 16 35 H 0.39 3.33 7.33 -74.05 -0.54 2.78 16 36 H 0.15 1.15 8.07 -2.39 -0.02 1.13 16 37 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.24 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.09 3.43 8.12 -2.38 -0.02 3.41 16 41 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 42 H 0.00 0.26 7.57 -2.39 -0.02 0.24 16 43 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -86.03 364.08 3.36 -82.67 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 0.43 Total: 3.74 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.86 Total: -29.40 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.01 Total: -87.17 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -2.82 Total: -19.54 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.88 Total: 49.71 kcal Total: -86.03 3.36 -82.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254141778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.191 kcal (2) G-P(sol) polarization free energy of solvation -86.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds