Wall clock time and date at job start Tue Mar 31 2020 11:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99739 * 2 1 4 4 C 1.52996 * 109.47245 * 68.68200 * 3 2 1 5 5 C 1.52999 * 109.47397 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47207 * 179.97438 * 5 4 3 7 7 C 1.38826 * 119.99804 * 180.02562 * 6 5 4 8 8 C 1.39795 * 119.58543 * 359.97438 * 7 6 5 9 9 C 1.38598 * 119.48871 * 180.02562 * 8 7 6 10 10 C 1.38382 * 118.68268 * 0.02562 * 9 8 7 11 11 C 1.40553 * 119.15034 * 359.97438 * 10 9 8 12 12 C 1.41317 * 119.78799 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99560 * 0.02562 * 12 11 10 14 14 C 1.40028 * 120.00123 * 180.02562 * 12 11 10 15 15 N 1.30742 * 120.00264 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99730 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47174 * 89.99781 * 16 14 12 18 18 H 1.48501 * 109.47328 * 209.99955 * 16 14 12 19 19 H 1.48505 * 109.47339 * 329.99852 * 16 14 12 20 20 N 1.31956 * 119.58112 * 179.73388 * 7 6 5 21 21 C 1.46899 * 110.99918 * 236.05037 * 2 1 3 22 22 C 1.53007 * 109.46927 * 201.01291 * 21 2 1 23 23 F 1.39900 * 109.47335 * 54.08222 * 22 21 2 24 24 F 1.39907 * 109.46967 * 174.08427 * 22 21 2 25 25 F 1.39901 * 109.46710 * 294.07727 * 22 21 2 26 26 H 1.08995 * 109.47050 * 64.49043 * 1 2 3 27 27 H 1.09002 * 109.46727 * 184.48887 * 1 2 3 28 28 H 1.09004 * 109.46864 * 304.48550 * 1 2 3 29 29 H 1.08994 * 109.47354 * 308.68071 * 3 2 1 30 30 H 1.09007 * 109.47065 * 188.67810 * 3 2 1 31 31 H 1.09002 * 109.47639 * 59.99522 * 4 3 2 32 32 H 1.09004 * 109.47154 * 300.00113 * 4 3 2 33 33 H 1.08995 * 109.47384 * 300.00045 * 5 4 3 34 34 H 1.09004 * 109.46957 * 59.99847 * 5 4 3 35 35 H 0.97000 * 120.00232 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.25333 * 359.97438 * 8 7 6 37 37 H 1.08001 * 120.65840 * 180.02562 * 9 8 7 38 38 H 1.08000 * 120.42829 * 179.97438 * 10 9 8 39 39 H 0.97002 * 120.00151 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.47118 * 321.00689 * 21 2 1 41 41 H 1.08994 * 109.47629 * 81.00803 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6886 2.0355 1.3438 5 6 2.2373 3.4637 1.3440 6 7 1.9430 4.0997 2.6306 7 6 2.3459 5.4070 2.8668 8 6 3.0324 6.1083 1.8712 9 6 3.4341 7.4132 2.1094 10 6 3.1412 7.9851 3.3350 11 6 2.4481 7.2284 4.2955 12 6 2.1425 7.7989 5.5517 13 1 2.4411 8.8134 5.7711 14 6 1.4526 7.0489 6.5121 15 7 1.0917 5.8206 6.2468 16 14 1.0481 7.8033 8.1724 17 1 -0.2765 8.4710 8.1031 18 1 1.0114 6.7367 9.2051 19 1 2.0878 8.8019 8.5289 20 7 2.0718 5.9737 4.0266 21 6 1.9954 -0.7659 -1.1376 22 6 3.4354 -1.1914 -0.8434 23 9 3.4801 -1.8731 0.3775 24 9 3.8909 -2.0326 -1.8642 25 9 4.2518 -0.0574 -0.7746 26 1 -0.3633 0.4426 -0.9274 27 1 -0.3633 -1.0246 0.0804 28 1 -0.3633 0.5819 0.8471 29 1 1.5260 1.9408 -0.8022 30 1 3.0741 1.3466 -0.1551 31 1 2.1579 1.4661 2.1461 32 1 0.6099 2.0603 1.4989 33 1 3.3159 3.4385 1.1891 34 1 1.7683 4.0333 0.5417 35 1 1.4666 3.6074 3.3173 36 1 3.2487 5.6366 0.9241 37 1 3.9652 7.9726 1.3535 38 1 3.4414 8.9999 3.5508 39 1 0.6141 5.3009 6.9122 40 1 1.3800 -1.6516 -1.2953 41 1 1.9757 -0.1456 -2.0336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255096767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:54 Heat of formation + Delta-G solvation = -131.296320 kcal Electronic energy + Delta-G solvation = -25962.501224 eV Core-core repulsion = 21654.490984 eV Total energy + Delta-G solvation = -4308.010239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.03665 -48.61681 -48.47664 -40.14381 -39.02791 -36.95202 -35.24169 -33.23652 -32.17673 -30.79494 -29.95313 -27.41988 -27.03382 -25.15745 -23.63530 -23.12528 -22.07234 -21.87948 -19.50373 -19.43313 -19.25783 -18.45115 -17.96429 -16.92362 -16.66643 -16.48181 -16.24496 -15.86035 -15.72024 -15.43077 -15.27616 -15.12830 -14.96716 -14.84314 -14.70217 -14.64860 -14.58773 -14.30599 -13.74149 -13.44133 -13.41944 -12.87557 -12.83837 -12.73461 -12.69428 -12.58024 -12.41826 -12.27617 -12.12177 -11.72453 -11.62994 -11.24416 -10.64287 -9.82752 -9.56601 -9.44114 -8.28758 -8.22023 -6.47260 1.06907 1.35180 1.42034 1.55309 1.59522 1.79059 2.25826 2.40641 2.75741 2.93402 2.94803 3.10460 3.47324 3.91860 4.01468 4.06145 4.13320 4.20043 4.31056 4.39273 4.49032 4.51827 4.59354 4.68569 4.75736 4.80838 4.99576 5.01386 5.04338 5.10357 5.17408 5.23443 5.40021 5.72419 5.76101 5.82842 5.97401 6.08383 6.23820 6.57193 6.84616 6.96231 7.23101 8.35305 8.52235 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.002409 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.347803 B =11617.999256 C =12235.667003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.553 5.553 3 C 0.044 3.956 4 C -0.110 4.110 5 C 0.143 3.857 6 N -0.735 5.735 7 C 0.393 3.607 8 C -0.368 4.368 9 C -0.030 4.030 10 C -0.345 4.345 11 C 0.258 3.742 12 C -0.471 4.471 13 H 0.086 0.914 14 C 0.025 3.975 15 N -0.752 5.752 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.257 1.257 20 N -0.567 5.567 21 C 0.014 3.986 22 C 0.451 3.549 23 F -0.187 7.187 24 F -0.187 7.187 25 F -0.192 7.192 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.393 0.607 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.276 0.724 40 H 0.142 0.858 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -15.782 -14.801 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.084 4.084 4 C -0.148 4.148 5 C 0.019 3.981 6 N -0.370 5.370 7 C 0.152 3.848 8 C -0.393 4.393 9 C -0.054 4.054 10 C -0.368 4.368 11 C 0.130 3.870 12 C -0.504 4.504 13 H 0.104 0.896 14 C -0.197 4.197 15 N -0.374 5.374 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.193 1.193 19 H -0.181 1.181 20 N -0.289 5.289 21 C -0.115 4.115 22 C 0.396 3.604 23 F -0.168 7.168 24 F -0.169 7.169 25 F -0.173 7.173 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.227 0.773 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.160 0.840 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.305 -16.697 -13.873 21.830 hybrid contribution 0.316 0.986 -0.240 1.063 sum -1.989 -15.710 -14.113 21.212 Atomic orbital electron populations 1.22526 0.84005 1.03826 1.01981 1.61666 1.10596 1.14245 1.41190 1.22373 1.01876 0.87522 0.96644 1.21562 1.01805 0.93163 0.98317 1.21148 0.99430 0.92859 0.84713 1.44313 1.64481 1.10720 1.17487 1.19001 0.89167 0.86330 0.90305 1.20959 1.18787 0.98067 1.01520 1.21015 0.94803 0.94172 0.95446 1.21696 1.15769 1.01596 0.97743 1.18697 0.87719 0.87323 0.93215 1.19938 1.32487 1.00409 0.97516 0.89557 1.26972 0.93886 0.94879 1.03940 1.70249 1.23947 1.08703 1.34485 0.85154 0.79494 0.78811 0.75851 1.18762 1.19311 1.18076 1.68193 1.29297 1.12917 1.18531 1.23307 0.89647 1.03357 0.95214 1.20983 0.91028 0.74510 0.73858 1.93181 1.97094 1.80577 1.45954 1.93180 1.91025 1.72595 1.60074 1.93097 1.76654 1.51505 1.96089 0.93581 0.89476 0.90873 0.92345 0.89480 0.91652 0.90740 0.93178 0.92523 0.77313 0.86371 0.85261 0.87944 0.91349 0.83974 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.33 127.69 1.19 1.46 16 2 N -0.55 -8.43 4.49 -922.46 -4.14 -12.57 16 3 C 0.04 0.78 4.77 86.30 0.41 1.19 16 4 C -0.11 -2.51 5.32 30.59 0.16 -2.35 16 5 C 0.14 4.23 4.88 86.38 0.42 4.66 16 6 N -0.73 -29.67 5.72 -344.98 -1.97 -31.64 16 7 C 0.39 19.66 7.65 133.42 1.02 20.68 16 8 C -0.37 -16.89 9.34 22.73 0.21 -16.68 16 9 C -0.03 -1.39 10.15 22.39 0.23 -1.17 16 10 C -0.35 -18.04 9.83 22.87 0.22 -17.81 16 11 C 0.26 15.04 6.55 40.18 0.26 15.30 16 12 C -0.47 -26.69 9.14 23.46 0.21 -26.48 16 13 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 14 C 0.02 1.31 5.50 85.29 0.47 1.78 16 15 N -0.75 -41.36 11.46 21.84 0.25 -41.11 16 16 Si 0.99 39.21 29.56 68.60 2.03 41.24 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 18 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 N -0.57 -32.71 7.89 -186.58 -1.47 -34.18 16 21 C 0.01 0.16 5.12 86.31 0.44 0.60 16 22 C 0.45 7.59 3.28 71.98 0.24 7.83 16 23 F -0.19 -3.97 17.13 44.97 0.77 -3.20 16 24 F -0.19 -3.11 17.32 44.97 0.78 -2.33 16 25 F -0.19 -3.90 14.63 44.97 0.66 -3.24 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 28 H 0.07 1.01 6.39 -2.39 -0.02 0.99 16 29 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.09 1.70 5.29 -2.38 -0.01 1.68 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.63 6.55 -2.39 -0.02 1.61 16 33 H 0.05 1.51 7.92 -2.39 -0.02 1.49 16 34 H 0.06 1.61 7.92 -2.39 -0.02 1.59 16 35 H 0.39 16.07 8.59 -92.71 -0.80 15.27 16 36 H 0.12 4.64 6.68 -2.91 -0.02 4.63 16 37 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 40 H 0.14 0.87 7.87 -2.39 -0.02 0.85 16 41 H 0.10 0.78 7.98 -2.39 -0.02 0.76 16 Total: -1.00 -68.82 350.25 2.66 -66.15 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.27 Total: 31.86 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.50 Total: -10.99 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -7.33 Total: -119.50 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 2.21 Total: -8.77 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -68.82 2.66 -66.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.143 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds