Wall clock time and date at job start Tue Mar 31 2020 11:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99689 * 2 1 4 4 O 1.20822 * 120.00092 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99588 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47456 * 184.99644 * 6 5 3 8 8 C 1.52992 * 109.47188 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47219 * 60.00473 * 8 7 6 10 10 N 1.46496 * 109.47654 * 179.97438 * 9 8 7 11 11 C 1.38231 * 120.00054 * 275.46162 * 10 9 8 12 12 C 1.38986 * 119.99736 * 5.28615 * 11 10 9 13 13 H 1.07997 * 120.00629 * 315.43420 * 12 11 10 14 14 C 1.40823 * 119.99677 * 135.43332 * 12 11 10 15 15 N 1.30344 * 119.99852 * 155.55705 * 14 12 11 16 16 Si 1.86799 * 120.00037 * 335.56179 * 14 12 11 17 17 H 1.48498 * 109.47171 * 95.35185 * 16 14 12 18 18 H 1.48506 * 109.47007 * 215.34787 * 16 14 12 19 19 H 1.48499 * 109.47192 * 335.34516 * 16 14 12 20 20 C 1.41153 * 119.99776 * 185.28701 * 11 10 9 21 21 C 1.43198 * 119.99584 * 172.73504 * 20 11 10 22 22 N 8.77501 * 159.02926 * 239.14454 * 6 1 2 23 23 C 1.43202 * 120.00234 * 352.73090 * 20 11 10 24 24 N 9.57032 * 143.97599 * 188.96148 * 3 1 2 25 25 C 1.53003 * 109.46882 * 299.99693 * 9 8 7 26 26 C 1.53002 * 109.47075 * 60.00205 * 25 9 8 27 27 H 1.08999 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47369 * 299.99942 * 1 2 3 29 29 H 1.09000 * 109.47129 * 60.00581 * 1 2 3 30 30 H 1.08992 * 109.47557 * 59.99796 * 5 3 2 31 31 H 1.09000 * 109.47086 * 299.99475 * 5 3 2 32 32 H 1.09002 * 109.46784 * 305.00090 * 6 5 3 33 33 H 1.09005 * 109.47079 * 300.00329 * 7 6 5 34 34 H 1.09004 * 109.47102 * 59.99783 * 7 6 5 35 35 H 1.09001 * 109.47379 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47815 * 300.00381 * 8 7 6 37 37 H 1.09002 * 109.47462 * 59.99319 * 9 8 7 38 38 H 0.97004 * 119.99838 * 95.45758 * 10 9 8 39 39 H 0.96999 * 119.99963 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.47479 * 299.99744 * 25 9 8 41 41 H 1.09002 * 109.46789 * 179.97438 * 25 9 8 42 42 H 1.09001 * 109.47511 * 180.02562 * 26 25 9 43 43 H 1.09005 * 109.47615 * 59.99757 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5227 2.8238 -0.1273 8 6 5.9564 4.2909 -0.1285 9 6 5.5169 4.9537 1.1786 10 7 5.9326 6.3585 1.1778 11 6 7.2106 6.7012 1.5778 12 6 8.1356 5.7074 1.8753 13 1 7.8428 4.8595 2.4766 14 6 9.4549 5.8062 1.3926 15 7 10.4234 5.1930 2.0130 16 14 9.8167 6.8160 -0.1367 17 1 10.2451 8.1810 0.2614 18 1 10.9006 6.1644 -0.9151 19 1 8.5923 6.9052 -0.9721 20 6 7.5761 8.0604 1.6841 21 6 8.8439 8.4191 2.2452 22 7 9.8478 8.7046 2.6925 23 6 6.6793 9.0807 1.2308 24 7 5.9660 9.8895 0.8768 25 6 3.9942 4.8722 1.3048 26 6 3.5605 3.4049 1.3060 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 3.9557 0.7810 -0.8907 31 1 3.9564 0.7807 0.8892 32 1 3.5376 3.2574 -0.8429 33 1 5.9852 2.3084 0.7145 34 1 5.8359 2.3519 -1.0587 35 1 7.0411 4.3492 -0.2189 36 1 5.4939 4.8060 -0.9704 37 1 5.9793 4.4388 2.0206 38 1 5.3111 7.0481 0.8966 39 1 11.3322 5.2613 1.6808 40 1 3.5317 5.3871 0.4629 41 1 3.6811 5.3440 2.2362 42 1 2.4757 3.3467 1.3955 43 1 4.0230 2.8899 2.1480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256975822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:35 Heat of formation + Delta-G solvation = -48.592308 kcal Electronic energy + Delta-G solvation = -26177.627562 eV Core-core repulsion = 22415.060378 eV Total energy + Delta-G solvation = -3762.567184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.83637 -39.04291 -37.24552 -36.49971 -35.00471 -34.82144 -33.61032 -32.22724 -30.63037 -29.79553 -28.12151 -26.88834 -26.05672 -22.68466 -22.15845 -20.92104 -20.52725 -19.81136 -18.49819 -17.78127 -17.54057 -16.82050 -16.67962 -16.19986 -15.48943 -15.00361 -14.57736 -14.23705 -14.15648 -13.80794 -13.40052 -13.21389 -13.03855 -12.80146 -12.69221 -12.38224 -12.31234 -12.20682 -12.00193 -11.88775 -11.84001 -11.71061 -11.52651 -11.14713 -11.03048 -11.00349 -10.95898 -10.80316 -10.68682 -10.58736 -10.51263 -10.38249 -10.07959 -9.86636 -9.52642 -9.12816 -7.30996 -6.68886 -5.24589 1.99008 2.47710 2.55173 3.07332 3.15110 3.25139 3.81666 3.87671 3.95412 4.09013 4.35446 4.44415 4.52877 4.63608 4.69660 4.79026 4.86428 4.93270 5.11928 5.16825 5.22831 5.26823 5.38236 5.46449 5.51810 5.59972 5.64655 5.66997 5.72902 5.94215 6.02786 6.07212 6.23553 6.28045 6.31409 6.33254 6.37956 6.56815 6.65791 6.72975 7.16329 7.35136 7.52889 7.83415 8.02383 8.41985 8.56574 8.90939 9.23696 9.66264 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003206 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.055662 B = 8731.208450 C = 9519.471674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.501 6.501 5 C -0.111 4.111 6 C -0.078 4.078 7 C -0.110 4.110 8 C -0.131 4.131 9 C 0.158 3.842 10 N -0.731 5.731 11 C 0.410 3.590 12 C -0.459 4.459 13 H 0.111 0.889 14 C 0.112 3.888 15 N -0.754 5.754 16 Si 0.890 3.110 17 H -0.246 1.246 18 H -0.282 1.282 19 H -0.244 1.244 20 C -0.324 4.324 21 C 0.321 3.679 22 N -0.517 5.517 23 C 0.306 3.694 24 N -0.533 5.533 25 C -0.126 4.126 26 C -0.115 4.115 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.388 0.612 39 H 0.295 0.705 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.606 -16.737 -5.526 22.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.388 6.388 5 C -0.148 4.148 6 C -0.097 4.097 7 C -0.148 4.148 8 C -0.170 4.170 9 C 0.053 3.947 10 N -0.355 5.355 11 C 0.295 3.705 12 C -0.491 4.491 13 H 0.129 0.871 14 C -0.117 4.117 15 N -0.374 5.374 16 Si 0.712 3.288 17 H -0.170 1.170 18 H -0.208 1.208 19 H -0.167 1.167 20 C -0.344 4.344 21 C 0.012 3.988 22 N -0.199 5.199 23 C -0.001 4.001 24 N -0.216 5.216 25 C -0.164 4.164 26 C -0.153 4.153 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.222 0.778 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.185 -15.056 -5.286 20.700 hybrid contribution -0.269 0.171 -0.661 0.734 sum -13.454 -14.885 -5.947 20.927 Atomic orbital electron populations 1.23241 0.76537 1.03541 1.02551 1.86523 1.23349 1.33954 1.84283 1.24015 0.92516 0.81155 0.72170 1.90660 1.67281 1.36123 1.44770 1.21572 0.86834 1.00475 1.05930 1.21108 0.96657 0.92055 0.99843 1.21549 0.93361 0.97672 1.02215 1.21937 1.02980 0.94079 0.97978 1.20826 0.93085 0.82606 0.98215 1.45154 1.13973 1.06878 1.69541 1.17092 0.82018 0.89837 0.81561 1.18910 0.92773 1.07436 1.29971 0.87095 1.26077 0.94485 0.93180 0.98001 1.69440 1.01960 1.31768 1.34205 0.86567 0.80001 0.81672 0.80526 1.16978 1.20830 1.16736 1.12701 0.94548 0.86959 1.40207 1.24359 0.91252 0.92348 0.90858 1.81014 1.12822 1.08743 1.17296 1.25304 0.92126 0.92206 0.90486 1.81043 1.12796 1.09299 1.18503 1.21794 0.95474 0.96794 1.02346 1.21660 1.01898 0.95236 0.96514 0.88264 0.91904 0.91965 0.87620 0.87465 0.90210 0.91250 0.91811 0.89846 0.92299 0.89587 0.77831 0.89329 0.91762 0.91506 0.90512 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.23 10.57 -39.26 -0.41 -3.65 16 3 C 0.46 4.47 7.67 36.00 0.28 4.75 16 4 O -0.50 -6.25 13.72 -18.75 -0.26 -6.51 16 5 C -0.11 -0.84 5.29 -27.88 -0.15 -0.99 16 6 C -0.08 -0.74 1.84 -90.62 -0.17 -0.91 16 7 C -0.11 -1.10 5.20 -26.74 -0.14 -1.23 16 8 C -0.13 -1.71 5.44 -26.73 -0.15 -1.86 16 9 C 0.16 2.22 2.27 -67.93 -0.15 2.07 16 10 N -0.73 -12.49 5.13 -51.92 -0.27 -12.76 16 11 C 0.41 8.41 5.49 -83.60 -0.46 7.95 16 12 C -0.46 -9.89 7.36 -38.33 -0.28 -10.18 16 13 H 0.11 2.40 6.93 -52.49 -0.36 2.03 16 14 C 0.11 2.54 4.42 -17.21 -0.08 2.47 16 15 N -0.75 -17.69 13.90 55.59 0.77 -16.92 16 16 Si 0.89 19.22 24.93 -169.99 -4.24 14.98 16 17 H -0.25 -5.81 5.99 56.52 0.34 -5.47 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.24 -5.12 7.11 56.52 0.40 -4.72 16 20 C -0.32 -7.31 4.49 -104.94 -0.47 -7.78 16 21 C 0.32 7.94 10.42 -22.49 -0.23 7.71 16 22 N -0.52 -13.45 18.03 41.82 0.75 -12.70 16 23 C 0.31 6.87 14.10 -22.50 -0.32 6.56 16 24 N -0.53 -12.26 18.53 41.80 0.77 -11.49 16 25 C -0.13 -1.53 5.39 -26.73 -0.14 -1.67 16 26 C -0.12 -1.22 4.95 -26.73 -0.13 -1.35 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.85 7.96 -51.93 -0.41 0.43 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.26 7.46 -51.93 -0.39 0.88 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.28 6.66 -51.93 -0.35 0.93 16 38 H 0.39 6.54 7.44 -40.82 -0.30 6.23 16 39 H 0.30 6.49 8.29 -40.82 -0.34 6.15 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.89 5.96 -51.93 -0.31 0.58 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -28.13 360.16 -4.94 -33.07 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.97 Total: 3.71 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.53 Total: 6.82 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 2.04 Total: -53.86 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.67 Total: -10.15 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.24 Total: 14.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.13 -4.94 -33.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256975822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.518 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds