Wall clock time and date at job start Tue Mar 31 2020 11:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99689 * 2 1 4 4 O 1.20822 * 120.00092 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99588 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47456 * 184.99644 * 6 5 3 8 8 C 1.52992 * 109.47188 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47219 * 60.00473 * 8 7 6 10 10 N 1.46496 * 109.47654 * 179.97438 * 9 8 7 11 11 C 1.38231 * 120.00054 * 275.46162 * 10 9 8 12 12 C 1.38986 * 119.99736 * 5.28615 * 11 10 9 13 13 H 1.07997 * 120.00629 * 315.43420 * 12 11 10 14 14 C 1.40823 * 119.99677 * 135.43332 * 12 11 10 15 15 N 1.30344 * 119.99852 * 155.55705 * 14 12 11 16 16 Si 1.86799 * 120.00037 * 335.56179 * 14 12 11 17 17 H 1.48498 * 109.47171 * 95.35185 * 16 14 12 18 18 H 1.48506 * 109.47007 * 215.34787 * 16 14 12 19 19 H 1.48499 * 109.47192 * 335.34516 * 16 14 12 20 20 C 1.41153 * 119.99776 * 185.28701 * 11 10 9 21 21 C 1.43198 * 119.99584 * 172.73504 * 20 11 10 22 22 N 8.77501 * 159.02926 * 239.14454 * 6 1 2 23 23 C 1.43202 * 120.00234 * 352.73090 * 20 11 10 24 24 N 9.57032 * 143.97599 * 188.96148 * 3 1 2 25 25 C 1.53003 * 109.46882 * 299.99693 * 9 8 7 26 26 C 1.53002 * 109.47075 * 60.00205 * 25 9 8 27 27 H 1.08999 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47369 * 299.99942 * 1 2 3 29 29 H 1.09000 * 109.47129 * 60.00581 * 1 2 3 30 30 H 1.08992 * 109.47557 * 59.99796 * 5 3 2 31 31 H 1.09000 * 109.47086 * 299.99475 * 5 3 2 32 32 H 1.09002 * 109.46784 * 305.00090 * 6 5 3 33 33 H 1.09005 * 109.47079 * 300.00329 * 7 6 5 34 34 H 1.09004 * 109.47102 * 59.99783 * 7 6 5 35 35 H 1.09001 * 109.47379 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47815 * 300.00381 * 8 7 6 37 37 H 1.09002 * 109.47462 * 59.99319 * 9 8 7 38 38 H 0.97004 * 119.99838 * 95.45758 * 10 9 8 39 39 H 0.96999 * 119.99963 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.47479 * 299.99744 * 25 9 8 41 41 H 1.09002 * 109.46789 * 179.97438 * 25 9 8 42 42 H 1.09001 * 109.47511 * 180.02562 * 26 25 9 43 43 H 1.09005 * 109.47615 * 59.99757 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5227 2.8238 -0.1273 8 6 5.9564 4.2909 -0.1285 9 6 5.5169 4.9537 1.1786 10 7 5.9326 6.3585 1.1778 11 6 7.2106 6.7012 1.5778 12 6 8.1356 5.7074 1.8753 13 1 7.8428 4.8595 2.4766 14 6 9.4549 5.8062 1.3926 15 7 10.4234 5.1930 2.0130 16 14 9.8167 6.8160 -0.1367 17 1 10.2451 8.1810 0.2614 18 1 10.9006 6.1644 -0.9151 19 1 8.5923 6.9052 -0.9721 20 6 7.5761 8.0604 1.6841 21 6 8.8439 8.4191 2.2452 22 7 9.8478 8.7046 2.6925 23 6 6.6793 9.0807 1.2308 24 7 5.9660 9.8895 0.8768 25 6 3.9942 4.8722 1.3048 26 6 3.5605 3.4049 1.3060 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 3.9557 0.7810 -0.8907 31 1 3.9564 0.7807 0.8892 32 1 3.5376 3.2574 -0.8429 33 1 5.9852 2.3084 0.7145 34 1 5.8359 2.3519 -1.0587 35 1 7.0411 4.3492 -0.2189 36 1 5.4939 4.8060 -0.9704 37 1 5.9793 4.4388 2.0206 38 1 5.3111 7.0481 0.8966 39 1 11.3322 5.2613 1.6808 40 1 3.5317 5.3871 0.4629 41 1 3.6811 5.3440 2.2362 42 1 2.4757 3.3467 1.3955 43 1 4.0230 2.8899 2.1480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256975822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:34 Heat of formation + Delta-G solvation = -64.151072 kcal Electronic energy + Delta-G solvation = -26178.302240 eV Core-core repulsion = 22415.060378 eV Total energy + Delta-G solvation = -3763.241863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56947 -40.15935 -38.59888 -37.45365 -36.71842 -36.54160 -35.24773 -33.45898 -31.56007 -31.06179 -28.89993 -28.63827 -26.93324 -23.68495 -23.15949 -22.37315 -21.48619 -20.68548 -20.31323 -19.20330 -18.46442 -17.77279 -17.43688 -17.35113 -17.15159 -16.27715 -15.62465 -15.13811 -15.01983 -14.91209 -14.86394 -14.59932 -14.43629 -14.19462 -13.97378 -13.80913 -13.69271 -13.56196 -13.30727 -13.24580 -12.93072 -12.86263 -12.82162 -12.66297 -12.54162 -12.35895 -12.11410 -11.93220 -11.76201 -11.71313 -11.62075 -11.46333 -11.36517 -11.08408 -10.89543 -10.56353 -9.07513 -8.35222 -7.01099 0.82015 1.28369 1.35242 1.39546 1.51974 1.88049 1.97000 2.13107 2.20665 2.32466 2.58509 2.83946 3.34139 3.74136 3.81266 3.86100 3.93155 4.03874 4.30949 4.34217 4.36723 4.42236 4.49057 4.55960 4.61262 4.65442 4.73059 4.75750 4.78502 4.86378 4.94030 5.06551 5.17327 5.22839 5.29810 5.36813 5.45754 5.47346 5.53504 5.65860 5.68251 5.77290 6.14165 6.32974 6.77998 6.83617 6.99668 7.10961 7.33080 7.93027 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003206 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.055662 B = 8731.208450 C = 9519.471674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.458 3.542 4 O -0.535 6.535 5 C -0.106 4.106 6 C -0.072 4.072 7 C -0.102 4.102 8 C -0.130 4.130 9 C 0.155 3.845 10 N -0.720 5.720 11 C 0.423 3.577 12 C -0.462 4.462 13 H 0.112 0.888 14 C 0.100 3.900 15 N -0.777 5.777 16 Si 0.909 3.091 17 H -0.276 1.276 18 H -0.267 1.267 19 H -0.235 1.235 20 C -0.335 4.335 21 C 0.322 3.678 22 N -0.547 5.547 23 C 0.312 3.688 24 N -0.541 5.541 25 C -0.119 4.119 26 C -0.111 4.111 27 H 0.128 0.872 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.391 0.609 39 H 0.300 0.700 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 -18.773 -6.273 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.303 3.697 4 O -0.425 6.425 5 C -0.143 4.143 6 C -0.091 4.091 7 C -0.140 4.140 8 C -0.169 4.169 9 C 0.051 3.949 10 N -0.342 5.342 11 C 0.305 3.695 12 C -0.494 4.494 13 H 0.129 0.871 14 C -0.128 4.128 15 N -0.399 5.399 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.192 1.192 19 H -0.157 1.157 20 C -0.356 4.356 21 C 0.015 3.985 22 N -0.230 5.230 23 C 0.006 3.994 24 N -0.225 5.225 25 C -0.157 4.157 26 C -0.149 4.149 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.225 0.775 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.321 -17.137 -6.056 23.140 hybrid contribution -0.029 0.787 -0.423 0.894 sum -14.350 -16.350 -6.478 22.699 Atomic orbital electron populations 1.23469 0.75394 1.05376 1.02242 1.86517 1.24560 1.33456 1.83900 1.24427 0.93300 0.80876 0.71127 1.90652 1.68158 1.37176 1.46507 1.21596 0.85435 0.99250 1.08022 1.20995 0.96135 0.93349 0.98626 1.21492 0.93549 0.95395 1.03567 1.21892 1.01634 0.96324 0.97028 1.21055 0.94362 0.80643 0.98866 1.45281 1.12736 1.08550 1.67643 1.16967 0.83198 0.88787 0.80549 1.18914 0.92673 1.07560 1.30273 0.87067 1.26341 0.94723 0.93163 0.98586 1.69451 1.02419 1.33002 1.34992 0.86281 0.80709 0.79675 0.80146 1.20136 1.19207 1.15737 1.12816 0.93980 0.87830 1.40988 1.24728 0.91522 0.91740 0.90501 1.80996 1.13779 1.09524 1.18747 1.25222 0.91931 0.92019 0.90242 1.81047 1.13135 1.09298 1.18980 1.21732 0.93762 0.98164 1.02085 1.21618 1.01374 0.94149 0.97713 0.85413 0.92289 0.92262 0.85237 0.85515 0.91338 0.90520 0.89968 0.91853 0.92381 0.89993 0.77486 0.88880 0.91999 0.91826 0.91365 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.37 -5.74 10.57 -51.44 -0.54 -6.29 16 3 C 0.46 8.03 7.67 71.24 0.55 8.57 16 4 O -0.54 -12.77 13.72 21.98 0.30 -12.47 16 5 C -0.11 -1.28 5.29 29.85 0.16 -1.12 16 6 C -0.07 -1.19 1.84 -10.79 -0.02 -1.21 16 7 C -0.10 -1.74 5.20 30.59 0.16 -1.58 16 8 C -0.13 -3.16 5.44 30.59 0.17 -2.99 16 9 C 0.15 4.11 2.27 44.99 0.10 4.21 16 10 N -0.72 -23.69 5.13 -318.17 -1.63 -25.32 16 11 C 0.42 16.96 5.49 39.03 0.21 17.18 16 12 C -0.46 -19.52 7.36 23.08 0.17 -19.35 16 13 H 0.11 4.70 6.93 -2.91 -0.02 4.68 16 14 C 0.10 4.46 4.42 85.55 0.38 4.84 16 15 N -0.78 -36.14 13.90 21.98 0.31 -35.84 16 16 Si 0.91 38.49 24.93 68.60 1.71 40.20 16 17 H -0.28 -13.12 5.99 99.48 0.60 -12.52 16 18 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.23 -9.47 7.11 99.48 0.71 -8.76 16 20 C -0.34 -14.94 4.49 -20.07 -0.09 -15.03 16 21 C 0.32 15.98 10.42 88.34 0.92 16.91 16 22 N -0.55 -28.70 18.03 19.00 0.34 -28.36 16 23 C 0.31 13.79 14.10 88.34 1.25 15.04 16 24 N -0.54 -24.32 18.53 18.99 0.35 -23.97 16 25 C -0.12 -2.71 5.39 30.60 0.16 -2.55 16 26 C -0.11 -2.13 4.95 30.60 0.15 -1.98 16 27 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 29 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.13 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.32 7.96 -2.39 -0.02 1.30 16 33 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.06 1.82 7.46 -2.39 -0.02 1.80 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 2.29 6.66 -2.39 -0.02 2.28 16 38 H 0.39 12.65 7.44 -92.71 -0.69 11.96 16 39 H 0.30 13.09 8.29 -92.71 -0.77 12.32 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.49 5.96 -2.39 -0.01 1.48 16 43 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -59.52 360.16 6.55 -52.97 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.25 Total: 16.62 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 5.46 Total: 22.45 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -0.63 Total: -113.49 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.24 Total: -18.76 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.71 Total: 40.20 kcal Total: -59.52 6.55 -52.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256975822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.179 kcal (2) G-P(sol) polarization free energy of solvation -59.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds