Wall clock time and date at job start Tue Mar 31 2020 11:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34675 * 119.69974 * 2 1 4 4 O 1.21956 * 119.96088 * 0.02562 * 3 2 1 5 5 C 1.41248 * 120.08623 * 179.97438 * 3 2 1 6 6 C 1.36108 * 119.51065 * 0.02562 * 5 3 2 7 7 C 1.40413 * 119.41584 * 359.71706 * 6 5 3 8 8 C 1.36302 * 119.90292 * 0.53309 * 7 6 5 9 9 C 1.47874 * 119.75439 * 179.76151 * 8 7 6 10 10 O 1.21545 * 119.99846 * 202.61016 * 9 8 7 11 11 N 1.34775 * 120.00385 * 22.60198 * 9 8 7 12 12 C 1.47684 * 121.55646 * 188.80021 * 11 9 8 13 13 C 1.54185 * 106.99012 * 219.35391 * 12 11 9 14 14 H 1.09006 * 115.12868 * 159.10603 * 13 12 11 15 15 C 1.54229 * 110.88025 * 293.23239 * 13 12 11 16 16 C 1.54233 * 85.37282 * 81.32503 * 15 13 12 17 17 H 1.09004 * 115.94920 * 144.96362 * 16 15 13 18 18 C 1.49189 * 121.58153 * 8.44517 * 11 9 8 19 19 N 1.48496 * 84.84675 * 28.52297 * 16 15 13 20 20 C 1.46905 * 110.99878 * 218.00446 * 19 16 15 21 21 C 1.50700 * 109.46871 * 317.43579 * 20 19 16 22 22 H 1.08006 * 120.00084 * 0.39746 * 21 20 19 23 23 C 1.37870 * 119.99953 * 180.39067 * 21 20 19 24 24 N 1.31517 * 120.00173 * 12.64329 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 192.63567 * 23 21 20 26 26 H 1.48501 * 109.46917 * 60.00672 * 25 23 21 27 27 H 1.48505 * 109.47326 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47220 * 300.00667 * 25 23 21 29 29 H 1.09005 * 109.46803 * 263.95996 * 1 2 3 30 30 H 1.08994 * 109.47363 * 23.96163 * 1 2 3 31 31 H 1.08999 * 109.47290 * 143.96298 * 1 2 3 32 32 H 1.08004 * 120.24654 * 180.02562 * 5 3 2 33 33 H 1.07997 * 120.29688 * 180.02562 * 6 5 3 34 34 H 1.07992 * 120.04959 * 180.31358 * 7 6 5 35 35 H 1.09003 * 109.95008 * 99.98229 * 12 11 9 36 36 H 1.09001 * 109.95066 * 338.72573 * 12 11 9 37 37 H 1.08996 * 113.88747 * 327.21352 * 15 13 12 38 38 H 1.09006 * 113.88783 * 195.43298 * 15 13 12 39 39 H 1.09008 * 109.82985 * 21.63547 * 18 11 9 40 40 H 1.08998 * 110.80816 * 259.89234 * 18 11 9 41 41 H 1.08996 * 109.47373 * 77.43781 * 20 19 16 42 42 H 1.08994 * 109.46995 * 197.44008 * 20 19 16 43 43 H 0.96994 * 120.00486 * 183.24288 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1322 1.1698 0.0000 4 8 1.5162 2.2224 0.0005 5 6 3.5447 1.1794 0.0005 6 6 4.2231 -0.0006 0.0005 7 6 3.5065 -1.2081 0.0060 8 6 2.1436 -1.1895 0.0003 9 6 1.3923 -2.4631 0.0008 10 8 0.2483 -2.4940 -0.4086 11 7 1.9760 -3.5898 0.4550 12 6 1.3346 -4.9106 0.2965 13 6 1.5934 -5.6962 1.5977 14 1 0.9072 -6.5225 1.7839 15 6 3.0937 -6.0158 1.7576 16 6 3.2156 -4.5749 2.2940 17 1 3.9463 -4.4219 3.0883 18 6 3.3040 -3.5625 1.1344 19 7 1.8089 -4.7616 2.7314 20 6 1.0332 -3.5272 2.5506 21 6 1.8567 -2.3466 2.9970 22 1 2.8586 -2.4975 3.3709 23 6 1.3311 -1.0739 2.9278 24 7 0.0446 -0.9044 2.7137 25 14 2.4462 0.4099 3.1384 26 1 3.4925 0.3963 2.0847 27 1 1.6427 1.6534 3.0226 28 1 3.0898 0.3597 4.4757 29 1 -0.3633 -0.1081 1.0220 30 1 -0.3634 0.9390 -0.4173 31 1 -0.3634 -0.8310 -0.6046 32 1 4.0824 2.1160 0.0010 33 1 5.3030 -0.0081 0.0014 34 1 4.0344 -2.1502 0.0112 35 1 1.7738 -5.4382 -0.5502 36 1 0.2624 -4.7874 0.1435 37 1 3.6129 -6.1807 0.8135 38 1 3.3046 -6.7834 2.5023 39 1 3.4984 -2.5641 1.5263 40 1 4.0972 -3.8539 0.4459 41 1 0.7736 -3.4120 1.4983 42 1 0.1218 -3.5803 3.1460 43 1 -0.3175 -0.0097 2.6181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:53 Heat of formation + Delta-G solvation = 134.938274 kcal Electronic energy + Delta-G solvation = -30220.961376 eV Core-core repulsion = 26466.352675 eV Total energy + Delta-G solvation = -3754.608701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11243 -40.73038 -38.37350 -36.30046 -34.57842 -33.66641 -32.97613 -30.86386 -29.92694 -29.09569 -27.00573 -26.19824 -25.16516 -23.70518 -22.74864 -21.84897 -21.72251 -20.22343 -18.14393 -17.33750 -17.09469 -16.73859 -16.38725 -16.13471 -15.75198 -15.15448 -14.89717 -14.78230 -14.49418 -14.16063 -13.88151 -13.68816 -13.10211 -12.94638 -12.57048 -12.31274 -12.16406 -12.02729 -11.86408 -11.65936 -11.39100 -11.37481 -11.12924 -10.98043 -10.85483 -10.42228 -10.22828 -9.93408 -9.70453 -9.57517 -9.33137 -9.23997 -9.03195 -8.87313 -8.47512 -7.46089 -7.06182 -6.22059 -4.17891 0.95831 2.09505 2.73138 3.19744 3.31838 3.38283 3.44308 3.48543 4.16130 4.31046 4.50394 4.59434 4.76931 4.94231 5.04658 5.05930 5.15550 5.25797 5.48664 5.50994 5.54963 5.61762 5.80049 5.83770 5.86223 6.02930 6.09788 6.15521 6.23071 6.31248 6.38477 6.44051 6.48039 6.52364 6.55325 6.73360 6.85853 6.95736 7.28377 7.46853 7.54832 7.70991 7.81891 7.99859 8.23564 8.41894 8.52625 8.81741 9.38436 10.82603 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.007498 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.593784 B = 3733.308350 C = 3879.805505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.454 5.454 3 C 0.506 3.494 4 O -0.561 6.561 5 C -0.238 4.238 6 C -0.016 4.016 7 C -0.225 4.225 8 C 0.173 3.827 9 C 0.587 3.413 10 O -0.524 6.524 11 N -0.579 5.579 12 C 0.106 3.894 13 C 0.002 3.998 14 H 0.106 0.894 15 C -0.139 4.139 16 C 0.031 3.969 17 H 0.105 0.895 18 C 0.092 3.908 19 N -0.460 5.460 20 C 0.101 3.899 21 C -0.516 4.516 22 H 0.061 0.939 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.821 3.179 26 H -0.232 1.232 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.340 -7.678 -7.236 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.163 5.163 3 C 0.308 3.692 4 O -0.445 6.445 5 C -0.261 4.261 6 C -0.038 4.038 7 C -0.249 4.249 8 C 0.059 3.941 9 C 0.376 3.624 10 O -0.402 6.402 11 N -0.313 5.313 12 C -0.017 4.017 13 C -0.109 4.109 14 H 0.124 0.876 15 C -0.177 4.177 16 C -0.079 4.079 17 H 0.123 0.877 18 C -0.030 4.030 19 N -0.182 5.182 20 C -0.025 4.025 21 C -0.554 4.554 22 H 0.079 0.921 23 C -0.129 4.129 24 N -0.509 5.509 25 Si 0.647 3.353 26 H -0.156 1.156 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.901 -7.032 -6.746 12.546 hybrid contribution 0.628 1.384 -0.121 1.525 sum 8.529 -5.648 -6.868 12.321 Atomic orbital electron populations 1.23628 0.75868 1.04572 1.09962 1.45276 1.10347 1.04739 1.55907 1.17237 0.89270 0.82842 0.79831 1.90874 1.70155 1.29308 1.54168 1.22153 0.92941 0.99907 1.11069 1.21192 1.00249 0.91684 0.90663 1.21336 0.91730 1.00408 1.11445 1.19805 0.92144 0.86715 0.95397 1.17131 0.85158 0.82447 0.77618 1.90607 1.16502 1.84395 1.48697 1.48357 1.20812 1.05869 1.56255 1.22116 0.99949 0.82211 0.97385 1.24103 0.97492 0.97929 0.91362 0.87562 1.23707 0.95537 0.97775 1.00678 1.23779 0.95789 0.92617 0.95735 0.87720 1.23401 0.82548 1.04179 0.92892 1.69401 1.01984 1.13318 1.33533 1.21402 0.94728 0.85952 1.00463 1.21191 1.00282 0.90771 1.43124 0.92059 1.24790 0.94466 0.98403 0.95276 1.70069 1.10780 1.22325 1.47761 0.87870 0.83507 0.83586 0.80380 1.15568 1.20693 1.20756 0.85589 0.91157 0.86371 0.83929 0.84776 0.82376 0.91090 0.88771 0.91886 0.89466 0.85324 0.91820 0.91723 0.95735 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.51 59.85 0.57 0.56 16 2 N -0.45 -9.79 1.90 -122.81 -0.23 -10.02 16 3 C 0.51 11.13 5.08 -15.16 -0.08 11.06 16 4 O -0.56 -14.03 16.55 4.96 0.08 -13.95 16 5 C -0.24 -4.27 8.29 -39.20 -0.32 -4.59 16 6 C -0.02 -0.24 8.58 -39.53 -0.34 -0.58 16 7 C -0.23 -3.58 7.00 -39.46 -0.28 -3.85 16 8 C 0.17 3.36 3.74 -82.34 -0.31 3.05 16 9 C 0.59 11.67 4.74 -12.32 -0.06 11.61 16 10 O -0.52 -11.57 12.64 5.33 0.07 -11.50 16 11 N -0.58 -9.90 1.67 -170.16 -0.28 -10.18 16 12 C 0.11 1.61 5.54 -2.77 -0.02 1.59 16 13 C 0.00 0.02 5.42 -65.78 -0.36 -0.33 16 14 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 15 C -0.14 -1.72 7.49 -25.65 -0.19 -1.92 16 16 C 0.03 0.48 4.04 -65.78 -0.27 0.21 16 17 H 0.10 1.58 8.04 -51.93 -0.42 1.17 16 18 C 0.09 1.37 3.40 -1.93 -0.01 1.37 16 19 N -0.46 -8.80 6.48 -230.60 -1.50 -10.29 16 20 C 0.10 2.35 4.70 -4.97 -0.02 2.33 16 21 C -0.52 -12.51 5.28 -34.44 -0.18 -12.69 16 22 H 0.06 1.47 6.09 -52.48 -0.32 1.15 16 23 C 0.07 1.88 3.46 -17.82 -0.06 1.82 16 24 N -0.87 -23.67 11.07 55.43 0.61 -23.05 16 25 Si 0.82 19.91 24.83 -169.99 -4.22 15.69 16 26 H -0.23 -4.92 3.04 56.52 0.17 -4.75 16 27 H -0.28 -7.65 7.11 56.52 0.40 -7.24 16 28 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 29 H 0.13 3.11 3.69 -51.93 -0.19 2.92 16 30 H 0.07 1.50 7.22 -51.93 -0.37 1.13 16 31 H 0.12 2.59 4.99 -52.11 -0.26 2.33 16 32 H 0.14 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.16 2.02 4.47 -52.49 -0.23 1.79 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.59 7.11 -51.93 -0.37 1.23 16 37 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.13 2.18 3.33 -51.92 -0.17 2.01 16 40 H 0.06 0.71 7.40 -51.93 -0.38 0.33 16 41 H 0.07 1.49 1.79 -92.78 -0.17 1.32 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.21 6.72 -40.82 -0.27 6.93 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -32.08 296.28 -8.07 -40.15 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.15 Total: 9.07 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -1.92 Total: 9.63 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -1.40 Total: -53.55 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.15 Total: -25.45 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.22 Total: 15.69 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.08 -8.07 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.088 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds