Wall clock time and date at job start Tue Mar 31 2020 11:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34675 * 119.69974 * 2 1 4 4 O 1.21956 * 119.96088 * 0.02562 * 3 2 1 5 5 C 1.41248 * 120.08623 * 179.97438 * 3 2 1 6 6 C 1.36108 * 119.51065 * 0.02562 * 5 3 2 7 7 C 1.40413 * 119.41584 * 359.71706 * 6 5 3 8 8 C 1.36302 * 119.90292 * 0.53309 * 7 6 5 9 9 C 1.47874 * 119.75439 * 179.76151 * 8 7 6 10 10 O 1.21545 * 119.99846 * 202.61016 * 9 8 7 11 11 N 1.34775 * 120.00385 * 22.60198 * 9 8 7 12 12 C 1.47684 * 121.55646 * 188.80021 * 11 9 8 13 13 C 1.54185 * 106.99012 * 219.35391 * 12 11 9 14 14 H 1.09006 * 115.12868 * 159.10603 * 13 12 11 15 15 C 1.54229 * 110.88025 * 293.23239 * 13 12 11 16 16 C 1.54233 * 85.37282 * 81.32503 * 15 13 12 17 17 H 1.09004 * 115.94920 * 144.96362 * 16 15 13 18 18 C 1.49189 * 121.58153 * 8.44517 * 11 9 8 19 19 N 1.48496 * 84.84675 * 28.52297 * 16 15 13 20 20 C 1.46905 * 110.99878 * 218.00446 * 19 16 15 21 21 C 1.50700 * 109.46871 * 317.43579 * 20 19 16 22 22 H 1.08006 * 120.00084 * 0.39746 * 21 20 19 23 23 C 1.37870 * 119.99953 * 180.39067 * 21 20 19 24 24 N 1.31517 * 120.00173 * 12.64329 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 192.63567 * 23 21 20 26 26 H 1.48501 * 109.46917 * 60.00672 * 25 23 21 27 27 H 1.48505 * 109.47326 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47220 * 300.00667 * 25 23 21 29 29 H 1.09005 * 109.46803 * 263.95996 * 1 2 3 30 30 H 1.08994 * 109.47363 * 23.96163 * 1 2 3 31 31 H 1.08999 * 109.47290 * 143.96298 * 1 2 3 32 32 H 1.08004 * 120.24654 * 180.02562 * 5 3 2 33 33 H 1.07997 * 120.29688 * 180.02562 * 6 5 3 34 34 H 1.07992 * 120.04959 * 180.31358 * 7 6 5 35 35 H 1.09003 * 109.95008 * 99.98229 * 12 11 9 36 36 H 1.09001 * 109.95066 * 338.72573 * 12 11 9 37 37 H 1.08996 * 113.88747 * 327.21352 * 15 13 12 38 38 H 1.09006 * 113.88783 * 195.43298 * 15 13 12 39 39 H 1.09008 * 109.82985 * 21.63547 * 18 11 9 40 40 H 1.08998 * 110.80816 * 259.89234 * 18 11 9 41 41 H 1.08996 * 109.47373 * 77.43781 * 20 19 16 42 42 H 1.08994 * 109.46995 * 197.44008 * 20 19 16 43 43 H 0.96994 * 120.00486 * 183.24288 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1322 1.1698 0.0000 4 8 1.5162 2.2224 0.0005 5 6 3.5447 1.1794 0.0005 6 6 4.2231 -0.0006 0.0005 7 6 3.5065 -1.2081 0.0060 8 6 2.1436 -1.1895 0.0003 9 6 1.3923 -2.4631 0.0008 10 8 0.2483 -2.4940 -0.4086 11 7 1.9760 -3.5898 0.4550 12 6 1.3346 -4.9106 0.2965 13 6 1.5934 -5.6962 1.5977 14 1 0.9072 -6.5225 1.7839 15 6 3.0937 -6.0158 1.7576 16 6 3.2156 -4.5749 2.2940 17 1 3.9463 -4.4219 3.0883 18 6 3.3040 -3.5625 1.1344 19 7 1.8089 -4.7616 2.7314 20 6 1.0332 -3.5272 2.5506 21 6 1.8567 -2.3466 2.9970 22 1 2.8586 -2.4975 3.3709 23 6 1.3311 -1.0739 2.9278 24 7 0.0446 -0.9044 2.7137 25 14 2.4462 0.4099 3.1384 26 1 3.4925 0.3963 2.0847 27 1 1.6427 1.6534 3.0226 28 1 3.0898 0.3597 4.4757 29 1 -0.3633 -0.1081 1.0220 30 1 -0.3634 0.9390 -0.4173 31 1 -0.3634 -0.8310 -0.6046 32 1 4.0824 2.1160 0.0010 33 1 5.3030 -0.0081 0.0014 34 1 4.0344 -2.1502 0.0112 35 1 1.7738 -5.4382 -0.5502 36 1 0.2624 -4.7874 0.1435 37 1 3.6129 -6.1807 0.8135 38 1 3.3046 -6.7834 2.5023 39 1 3.4984 -2.5641 1.5263 40 1 4.0972 -3.8539 0.4459 41 1 0.7736 -3.4120 1.4983 42 1 0.1218 -3.5803 3.1460 43 1 -0.3175 -0.0097 2.6181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:52 Heat of formation + Delta-G solvation = 108.761609 kcal Electronic energy + Delta-G solvation = -30222.096481 eV Core-core repulsion = 26466.352675 eV Total energy + Delta-G solvation = -3755.743806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.48095 -42.20114 -39.84425 -37.86957 -36.03425 -35.31292 -34.64607 -32.18246 -31.55211 -30.43767 -28.62119 -27.70514 -26.71420 -25.04221 -24.08458 -23.46671 -23.13438 -21.61404 -19.43591 -18.78741 -18.69763 -18.38821 -17.88174 -17.71355 -17.18205 -16.65277 -16.50372 -16.27337 -15.85809 -15.59834 -15.32471 -15.20037 -14.73401 -14.32590 -14.07797 -13.81301 -13.60251 -13.49151 -13.42905 -13.22060 -12.98722 -12.78580 -12.74502 -12.56472 -12.38989 -11.97704 -11.92464 -11.35892 -11.24031 -11.01015 -10.96648 -10.83775 -10.61930 -10.35728 -10.24557 -8.98314 -8.52324 -8.23700 -6.20279 -0.43654 0.67923 1.20765 1.28574 1.34199 1.44451 1.91211 2.06334 2.33194 2.71510 3.05331 3.17830 3.36833 3.65608 3.66654 3.84259 3.94051 3.98981 4.20177 4.31572 4.42958 4.43886 4.47245 4.57579 4.62899 4.71274 4.80248 4.93549 4.96005 5.03709 5.05841 5.12800 5.13948 5.19050 5.26262 5.35318 5.41979 5.48872 5.57700 5.63196 5.90561 6.00577 6.25715 6.31825 6.49367 6.87840 6.89656 7.05466 7.39191 8.80175 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.007498 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.593784 B = 3733.308350 C = 3879.805505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.462 5.462 3 C 0.483 3.517 4 O -0.615 6.615 5 C -0.258 4.258 6 C 0.008 3.992 7 C -0.197 4.197 8 C 0.133 3.867 9 C 0.577 3.423 10 O -0.564 6.564 11 N -0.576 5.576 12 C 0.104 3.896 13 C -0.003 4.003 14 H 0.113 0.887 15 C -0.106 4.106 16 C 0.024 3.976 17 H 0.111 0.889 18 C 0.084 3.916 19 N -0.496 5.496 20 C 0.112 3.888 21 C -0.497 4.497 22 H 0.073 0.927 23 C 0.044 3.956 24 N -0.896 5.896 25 Si 0.849 3.151 26 H -0.179 1.179 27 H -0.333 1.333 28 H -0.287 1.287 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.200 0.800 34 H 0.202 0.798 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.073 0.927 42 H -0.044 1.044 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.933 -10.641 -8.549 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.171 5.171 3 C 0.288 3.712 4 O -0.504 6.504 5 C -0.280 4.280 6 C -0.013 4.013 7 C -0.220 4.220 8 C 0.022 3.978 9 C 0.367 3.633 10 O -0.446 6.446 11 N -0.308 5.308 12 C -0.018 4.018 13 C -0.113 4.113 14 H 0.130 0.870 15 C -0.143 4.143 16 C -0.085 4.085 17 H 0.129 0.871 18 C -0.037 4.037 19 N -0.218 5.218 20 C -0.015 4.015 21 C -0.535 4.535 22 H 0.091 0.909 23 C -0.155 4.155 24 N -0.539 5.539 25 Si 0.677 3.323 26 H -0.101 1.101 27 H -0.262 1.262 28 H -0.214 1.214 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.181 0.819 33 H 0.217 0.783 34 H 0.219 0.781 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.090 0.910 42 H -0.026 1.026 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.585 -10.089 -8.049 18.738 hybrid contribution -1.105 2.173 0.335 2.460 sum 12.480 -7.917 -7.714 16.671 Atomic orbital electron populations 1.23291 0.77693 1.03964 1.08099 1.45243 1.09650 1.05819 1.56387 1.18054 0.91065 0.82215 0.79879 1.90830 1.71375 1.30962 1.57205 1.22414 0.90652 1.02557 1.12346 1.21901 1.03213 0.89492 0.86692 1.22066 0.90164 1.02879 1.06880 1.20170 0.93678 0.85700 0.98295 1.17397 0.84909 0.83358 0.77670 1.90576 1.18234 1.84959 1.50782 1.48479 1.21625 1.05648 1.55081 1.22289 0.98681 0.81698 0.99121 1.24281 1.00475 0.96958 0.89571 0.86955 1.23558 0.92543 0.95594 1.02622 1.23993 0.93097 0.95212 0.96245 0.87078 1.23652 0.82722 1.03261 0.94022 1.69233 1.04104 1.11766 1.36684 1.21219 0.92794 0.88120 0.99344 1.21384 1.00395 0.90519 1.41232 0.90949 1.25178 0.94599 0.99977 0.95785 1.70195 1.12341 1.21431 1.49955 0.87507 0.83405 0.80029 0.81371 1.10073 1.26180 1.21376 0.88173 0.91929 0.86494 0.81883 0.78274 0.78098 0.86490 0.91957 0.87801 0.88297 0.87261 0.85545 0.90999 1.02633 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.51 9.51 127.77 1.22 1.73 16 2 N -0.46 -20.34 1.90 -660.61 -1.26 -21.59 16 3 C 0.48 21.44 5.08 85.00 0.43 21.88 16 4 O -0.62 -32.35 16.55 -5.17 -0.09 -32.44 16 5 C -0.26 -8.44 8.29 22.51 0.19 -8.26 16 6 C 0.01 0.19 8.58 22.30 0.19 0.38 16 7 C -0.20 -5.19 7.00 22.35 0.16 -5.04 16 8 C 0.13 4.94 3.74 40.45 0.15 5.09 16 9 C 0.58 22.45 4.74 86.80 0.41 22.86 16 10 O -0.56 -25.85 12.64 -3.86 -0.05 -25.90 16 11 N -0.58 -17.88 1.67 -810.54 -1.35 -19.23 16 12 C 0.10 2.85 5.54 86.55 0.48 3.33 16 13 C 0.00 -0.07 5.42 45.28 0.25 0.17 16 14 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 15 C -0.11 -1.93 7.49 31.50 0.24 -1.70 16 16 C 0.02 0.63 4.04 45.29 0.18 0.81 16 17 H 0.11 2.75 8.04 -2.38 -0.02 2.73 16 18 C 0.08 2.01 3.40 86.26 0.29 2.31 16 19 N -0.50 -18.01 6.48 -883.50 -5.73 -23.74 16 20 C 0.11 5.32 4.70 85.56 0.40 5.72 16 21 C -0.50 -23.96 5.28 25.60 0.14 -23.82 16 22 H 0.07 3.29 6.09 -2.91 -0.02 3.27 16 23 C 0.04 2.32 3.46 84.65 0.29 2.61 16 24 N -0.90 -52.12 11.07 21.45 0.24 -51.88 16 25 Si 0.85 41.14 24.83 68.60 1.70 42.85 16 26 H -0.18 -6.99 3.04 99.48 0.30 -6.68 16 27 H -0.33 -19.17 7.11 99.48 0.71 -18.46 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 29 H 0.10 5.41 3.69 -2.38 -0.01 5.40 16 30 H 0.06 2.96 7.22 -2.39 -0.02 2.95 16 31 H 0.12 5.57 4.99 -5.22 -0.03 5.55 16 32 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.20 3.49 4.47 -2.91 -0.01 3.48 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.11 7.11 -2.39 -0.02 2.09 16 37 H 0.10 1.19 8.06 -2.39 -0.02 1.17 16 38 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.11 3.07 3.33 -2.38 -0.01 3.06 16 40 H 0.13 1.58 7.40 -2.39 -0.02 1.57 16 41 H 0.07 3.37 1.79 -83.04 -0.15 3.22 16 42 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 43 H 0.25 14.91 6.72 -92.71 -0.62 14.29 16 Total: -1.00 -81.98 296.28 -0.86 -82.84 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.66 Total: 21.02 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 5.01 Total: 28.08 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -8.10 Total: -116.44 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -0.13 Total: -58.34 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.70 Total: 42.85 kcal Total: -81.98 -0.86 -82.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.600 kcal (2) G-P(sol) polarization free energy of solvation -81.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds