Wall clock time and date at job start Tue Mar 31 2020 11:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37097 * 119.99752 * 2 1 4 4 H 1.08002 * 119.99501 * 176.24929 * 3 2 1 5 5 C 1.38953 * 120.00290 * 356.25400 * 3 2 1 6 6 N 1.31412 * 119.99950 * 5.38528 * 5 3 2 7 7 Si 1.86797 * 120.00120 * 185.38233 * 5 3 2 8 8 H 1.48496 * 109.47073 * 59.99810 * 7 5 3 9 9 H 1.48495 * 109.47270 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47021 * 300.00043 * 7 5 3 11 11 C 1.34774 * 119.99966 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00080 * 4.10310 * 11 2 1 13 13 C 1.50696 * 119.99946 * 184.09910 * 11 2 1 14 14 C 1.53044 * 109.46091 * 190.36279 * 13 11 2 15 15 C 1.53190 * 109.31005 * 178.62812 * 14 13 11 16 16 N 1.46930 * 108.89431 * 54.56871 * 15 14 13 17 17 C 1.34770 * 120.63358 * 126.45961 * 16 15 14 18 18 O 1.21563 * 120.00033 * 6.45517 * 17 16 15 19 19 C 1.47840 * 120.00434 * 186.46126 * 17 16 15 20 20 C 1.40022 * 120.56290 * 212.57065 * 19 17 16 21 21 C 1.38353 * 118.28922 * 179.73223 * 20 19 17 22 22 C 1.38361 * 119.29943 * 0.56334 * 21 20 19 23 23 N 1.31917 * 121.08235 * 359.69678 * 22 21 20 24 24 C 1.31701 * 121.87799 * 0.02562 * 23 22 21 25 25 C 1.46963 * 118.70949 * 306.63705 * 16 15 14 26 26 C 1.53043 * 109.44587 * 70.30368 * 13 11 2 27 27 H 1.09001 * 109.46989 * 182.51914 * 1 2 3 28 28 H 1.09000 * 109.47377 * 302.52153 * 1 2 3 29 29 H 1.08999 * 109.47336 * 62.52253 * 1 2 3 30 30 H 0.96999 * 119.99959 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46455 * 310.33893 * 13 11 2 32 32 H 1.08996 * 109.49366 * 58.67959 * 14 13 11 33 33 H 1.08992 * 109.52355 * 298.59919 * 14 13 11 34 34 H 1.09004 * 109.58203 * 174.42573 * 15 14 13 35 35 H 1.08996 * 109.59400 * 294.70572 * 15 14 13 36 36 H 1.08002 * 120.85108 * 359.97438 * 20 19 17 37 37 H 1.07998 * 120.35105 * 180.25979 * 21 20 19 38 38 H 1.07999 * 119.45718 * 179.72351 * 22 21 20 39 39 H 1.08001 * 119.71551 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.46793 * 293.56718 * 25 16 15 41 41 H 1.09002 * 109.70733 * 173.28696 * 25 16 15 42 42 H 1.08995 * 109.49844 * 301.32570 * 26 13 11 43 43 H 1.08999 * 109.50015 * 61.42678 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2287 1.1883 0.0612 5 6 1.4579 2.3894 -0.0786 6 7 0.1442 2.3942 -0.0462 7 14 2.3943 3.9986 -0.2303 8 1 3.2178 3.9775 -1.4658 9 1 1.4316 5.1273 -0.2957 10 1 3.2780 4.1703 0.9508 11 6 2.1389 -1.1672 -0.0005 12 8 1.5348 -2.2162 -0.0761 13 6 3.6430 -1.1689 0.0928 14 6 4.1695 -2.5786 -0.1859 15 6 5.7001 -2.5691 -0.1240 16 7 6.1206 -2.0129 1.1693 17 6 6.9676 -2.6932 1.9667 18 8 7.4831 -3.7203 1.5701 19 6 7.2699 -2.1907 3.3238 20 6 8.5311 -2.3987 3.8955 21 6 8.7648 -1.9035 5.1661 22 6 7.7509 -1.2353 5.8294 23 7 6.5704 -1.0588 5.2679 24 6 6.3013 -1.5067 4.0589 25 6 5.5963 -0.7022 1.5780 26 6 4.0668 -0.7326 1.4971 27 1 -0.3633 -1.0267 0.0452 28 1 -0.3634 0.5525 0.8665 29 1 -0.3634 0.4742 -0.9117 30 1 -0.3392 3.2333 -0.1015 31 1 4.0532 -0.4762 -0.6420 32 1 3.8475 -2.8978 -1.1771 33 1 3.7794 -3.2678 0.5629 34 1 6.0761 -3.5874 -0.2235 35 1 6.0948 -1.9534 -0.9322 36 1 9.3027 -2.9287 3.3569 37 1 9.7268 -2.0412 5.6371 38 1 7.9292 -0.8515 6.8231 39 1 5.3224 -1.3429 3.6329 40 1 5.9825 0.0679 0.9102 41 1 5.9038 -0.4861 2.6012 42 1 3.6718 0.2620 1.7038 43 1 3.6776 -1.4388 2.2305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318118784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:16 Heat of formation + Delta-G solvation = -1.915648 kcal Electronic energy + Delta-G solvation = -27038.002318 eV Core-core repulsion = 23277.459186 eV Total energy + Delta-G solvation = -3760.543132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08716 -39.55637 -38.65301 -36.80664 -34.87569 -33.09984 -32.72042 -32.01804 -31.37565 -30.41104 -27.12218 -25.88683 -24.69414 -24.03342 -23.55180 -22.85292 -21.10164 -19.54224 -18.95360 -17.84870 -17.52126 -16.74338 -16.56491 -16.13153 -15.90771 -14.93768 -14.83933 -14.47324 -14.30931 -14.26950 -14.09332 -13.73418 -13.47095 -13.33076 -13.07781 -12.96239 -12.66019 -12.22790 -11.98293 -11.70661 -11.46888 -11.34798 -11.10886 -10.99239 -10.70526 -10.51682 -10.46266 -10.24196 -10.19399 -10.17448 -10.13264 -9.61465 -9.32117 -9.15174 -8.69455 -8.29506 -7.95755 -6.34123 -3.94671 0.46464 0.93577 2.65713 2.89969 3.04567 3.12799 3.14112 3.55036 3.83116 3.98655 4.08861 4.34465 4.54815 4.58412 4.69924 4.74326 4.90214 5.02525 5.10924 5.17703 5.24494 5.35539 5.46872 5.49662 5.64248 5.72794 5.74402 5.79652 5.88421 6.03361 6.11265 6.27822 6.34724 6.36413 6.44294 6.70653 6.74056 6.90980 7.25218 7.30419 7.33574 7.45621 7.60915 7.70728 8.03819 8.33176 9.00347 9.49831 9.89472 10.58260 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.003994 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.165419 B = 7009.512208 C = 8021.491630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.443 5.443 3 C -0.332 4.332 4 H 0.103 0.897 5 C 0.034 3.966 6 N -0.874 5.874 7 Si 0.923 3.077 8 H -0.273 1.273 9 H -0.282 1.282 10 H -0.272 1.272 11 C 0.450 3.550 12 O -0.615 6.615 13 C -0.085 4.085 14 C -0.111 4.111 15 C 0.113 3.887 16 N -0.598 5.598 17 C 0.564 3.436 18 O -0.540 6.540 19 C -0.182 4.182 20 C -0.023 4.023 21 C -0.181 4.181 22 C 0.116 3.884 23 N -0.484 5.484 24 C 0.125 3.875 25 C 0.080 3.920 26 C -0.129 4.129 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.268 0.732 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.900 -2.471 7.152 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.160 5.160 3 C -0.459 4.459 4 H 0.120 0.880 5 C -0.170 4.170 6 N -0.513 5.513 7 Si 0.750 3.250 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.238 3.762 12 O -0.503 6.503 13 C -0.107 4.107 14 C -0.149 4.149 15 C -0.009 4.009 16 N -0.330 5.330 17 C 0.351 3.649 18 O -0.419 6.419 19 C -0.187 4.187 20 C -0.049 4.049 21 C -0.201 4.201 22 C -0.040 4.040 23 N -0.193 5.193 24 C -0.033 4.033 25 C -0.042 4.042 26 C -0.168 4.168 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.194 0.806 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.011 -2.874 7.340 16.076 hybrid contribution 0.952 0.757 -0.574 1.345 sum 14.963 -2.118 6.766 16.558 Atomic orbital electron populations 1.21542 0.79810 0.97382 1.03296 1.43726 1.06261 1.04751 1.61226 1.19732 0.92493 0.82854 1.50859 0.87956 1.25311 0.95682 0.99702 0.96284 1.70225 1.05953 1.27273 1.47812 0.86050 0.79029 0.80907 0.79048 1.19828 1.20760 1.19700 1.19819 0.88836 0.83693 0.83847 1.90519 1.70016 1.31600 1.58132 1.20935 0.94828 0.97205 0.97709 1.21703 0.92601 0.97120 1.03483 1.21754 0.95450 1.00248 0.83405 1.48050 1.45128 1.20031 1.19841 1.18060 0.78963 0.83676 0.84159 1.90766 1.51629 1.24536 1.74936 1.21019 0.96992 1.03918 0.96769 1.21673 0.95506 0.93482 0.94258 1.22146 1.01448 1.00790 0.95711 1.23043 0.88148 0.93226 0.99609 1.67820 1.21473 1.19193 1.10778 1.23565 0.99752 0.90463 0.89482 1.22544 0.95372 0.83971 1.02283 1.21959 0.93221 1.04408 0.97163 0.94846 0.91315 0.92250 0.92141 0.89452 0.90297 0.90979 0.89026 0.91255 0.83883 0.84065 0.82229 0.80615 0.90543 0.88265 0.87973 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.03 8.87 59.85 0.53 3.57 16 2 N -0.44 -10.83 3.03 -122.19 -0.37 -11.20 16 3 C -0.33 -7.82 8.34 -14.93 -0.12 -7.95 16 4 H 0.10 2.18 5.16 -52.49 -0.27 1.91 16 5 C 0.03 0.82 5.45 -17.47 -0.10 0.73 16 6 N -0.87 -21.96 9.44 55.50 0.52 -21.44 16 7 Si 0.92 18.44 29.56 -169.99 -5.02 13.42 16 8 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 9 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 C 0.45 10.41 6.91 -10.99 -0.08 10.33 16 12 O -0.61 -15.95 15.35 5.55 0.09 -15.87 16 13 C -0.09 -1.53 1.63 -91.73 -0.15 -1.68 16 14 C -0.11 -1.80 4.69 -26.61 -0.12 -1.92 16 15 C 0.11 1.57 6.41 -3.71 -0.02 1.55 16 16 N -0.60 -8.23 2.98 -173.85 -0.52 -8.74 16 17 C 0.56 8.18 7.43 -12.33 -0.09 8.09 16 18 O -0.54 -9.28 16.28 5.31 0.09 -9.19 16 19 C -0.18 -2.25 5.47 -104.82 -0.57 -2.83 16 20 C -0.02 -0.23 9.75 -38.87 -0.38 -0.61 16 21 C -0.18 -1.47 10.10 -39.49 -0.40 -1.87 16 22 C 0.12 1.05 11.17 -17.47 -0.20 0.86 16 23 N -0.48 -5.80 10.35 -12.91 -0.13 -5.93 16 24 C 0.12 1.52 8.61 -17.13 -0.15 1.37 16 25 C 0.08 1.02 5.52 -3.69 -0.02 1.00 16 26 C -0.13 -2.01 4.69 -26.61 -0.12 -2.13 16 27 H 0.03 0.81 6.92 -51.93 -0.36 0.46 16 28 H 0.07 1.74 6.95 -51.93 -0.36 1.38 16 29 H 0.06 1.52 7.14 -51.93 -0.37 1.14 16 30 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 31 H 0.09 1.53 7.21 -51.93 -0.37 1.15 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 34 H 0.09 1.30 7.05 -51.93 -0.37 0.94 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.14 1.33 8.02 -52.49 -0.42 0.91 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.18 2.12 4.98 -52.49 -0.26 1.86 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.15 3.51 -51.93 -0.18 0.96 16 42 H 0.10 1.71 6.17 -51.93 -0.32 1.39 16 43 H 0.07 1.06 7.66 -51.93 -0.40 0.66 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -30.65 340.95 -7.56 -38.20 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.35 Total: 7.12 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -1.99 Total: 8.50 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.50 Total: -47.32 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: 0.17 Total: -25.06 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.65 -7.56 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318118784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.285 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds