Wall clock time and date at job start Tue Mar 31 2020 11:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37097 * 119.99752 * 2 1 4 4 H 1.08002 * 119.99501 * 176.24929 * 3 2 1 5 5 C 1.38953 * 120.00290 * 356.25400 * 3 2 1 6 6 N 1.31412 * 119.99950 * 5.38528 * 5 3 2 7 7 Si 1.86797 * 120.00120 * 185.38233 * 5 3 2 8 8 H 1.48496 * 109.47073 * 59.99810 * 7 5 3 9 9 H 1.48495 * 109.47270 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47021 * 300.00043 * 7 5 3 11 11 C 1.34774 * 119.99966 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00080 * 4.10310 * 11 2 1 13 13 C 1.50696 * 119.99946 * 184.09910 * 11 2 1 14 14 C 1.53044 * 109.46091 * 190.36279 * 13 11 2 15 15 C 1.53190 * 109.31005 * 178.62812 * 14 13 11 16 16 N 1.46930 * 108.89431 * 54.56871 * 15 14 13 17 17 C 1.34770 * 120.63358 * 126.45961 * 16 15 14 18 18 O 1.21563 * 120.00033 * 6.45517 * 17 16 15 19 19 C 1.47840 * 120.00434 * 186.46126 * 17 16 15 20 20 C 1.40022 * 120.56290 * 212.57065 * 19 17 16 21 21 C 1.38353 * 118.28922 * 179.73223 * 20 19 17 22 22 C 1.38361 * 119.29943 * 0.56334 * 21 20 19 23 23 N 1.31917 * 121.08235 * 359.69678 * 22 21 20 24 24 C 1.31701 * 121.87799 * 0.02562 * 23 22 21 25 25 C 1.46963 * 118.70949 * 306.63705 * 16 15 14 26 26 C 1.53043 * 109.44587 * 70.30368 * 13 11 2 27 27 H 1.09001 * 109.46989 * 182.51914 * 1 2 3 28 28 H 1.09000 * 109.47377 * 302.52153 * 1 2 3 29 29 H 1.08999 * 109.47336 * 62.52253 * 1 2 3 30 30 H 0.96999 * 119.99959 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46455 * 310.33893 * 13 11 2 32 32 H 1.08996 * 109.49366 * 58.67959 * 14 13 11 33 33 H 1.08992 * 109.52355 * 298.59919 * 14 13 11 34 34 H 1.09004 * 109.58203 * 174.42573 * 15 14 13 35 35 H 1.08996 * 109.59400 * 294.70572 * 15 14 13 36 36 H 1.08002 * 120.85108 * 359.97438 * 20 19 17 37 37 H 1.07998 * 120.35105 * 180.25979 * 21 20 19 38 38 H 1.07999 * 119.45718 * 179.72351 * 22 21 20 39 39 H 1.08001 * 119.71551 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.46793 * 293.56718 * 25 16 15 41 41 H 1.09002 * 109.70733 * 173.28696 * 25 16 15 42 42 H 1.08995 * 109.49844 * 301.32570 * 26 13 11 43 43 H 1.08999 * 109.50015 * 61.42678 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2287 1.1883 0.0612 5 6 1.4579 2.3894 -0.0786 6 7 0.1442 2.3942 -0.0462 7 14 2.3943 3.9986 -0.2303 8 1 3.2178 3.9775 -1.4658 9 1 1.4316 5.1273 -0.2957 10 1 3.2780 4.1703 0.9508 11 6 2.1389 -1.1672 -0.0005 12 8 1.5348 -2.2162 -0.0761 13 6 3.6430 -1.1689 0.0928 14 6 4.1695 -2.5786 -0.1859 15 6 5.7001 -2.5691 -0.1240 16 7 6.1206 -2.0129 1.1693 17 6 6.9676 -2.6932 1.9667 18 8 7.4831 -3.7203 1.5701 19 6 7.2699 -2.1907 3.3238 20 6 8.5311 -2.3987 3.8955 21 6 8.7648 -1.9035 5.1661 22 6 7.7509 -1.2353 5.8294 23 7 6.5704 -1.0588 5.2679 24 6 6.3013 -1.5067 4.0589 25 6 5.5963 -0.7022 1.5780 26 6 4.0668 -0.7326 1.4971 27 1 -0.3633 -1.0267 0.0452 28 1 -0.3634 0.5525 0.8665 29 1 -0.3634 0.4742 -0.9117 30 1 -0.3392 3.2333 -0.1015 31 1 4.0532 -0.4762 -0.6420 32 1 3.8475 -2.8978 -1.1771 33 1 3.7794 -3.2678 0.5629 34 1 6.0761 -3.5874 -0.2235 35 1 6.0948 -1.9534 -0.9322 36 1 9.3027 -2.9287 3.3569 37 1 9.7268 -2.0412 5.6371 38 1 7.9292 -0.8515 6.8231 39 1 5.3224 -1.3429 3.6329 40 1 5.9825 0.0679 0.9102 41 1 5.9038 -0.4861 2.6012 42 1 3.6718 0.2620 1.7038 43 1 3.6776 -1.4388 2.2305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318118784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:15 Heat of formation + Delta-G solvation = -20.856449 kcal Electronic energy + Delta-G solvation = -27038.823653 eV Core-core repulsion = 23277.459186 eV Total energy + Delta-G solvation = -3761.364467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08241 -40.86057 -40.02537 -38.15564 -36.76869 -34.32765 -33.56787 -33.39342 -32.91580 -31.46761 -28.81517 -27.41086 -26.15614 -25.04622 -24.66378 -23.98712 -22.36035 -21.02270 -20.41606 -19.11650 -18.43402 -18.18863 -17.89143 -17.39228 -17.00825 -16.20017 -16.12231 -15.96931 -15.79772 -15.71552 -15.25697 -14.78105 -14.75119 -14.56732 -14.36311 -14.07759 -13.92646 -13.48002 -13.39398 -13.18472 -13.08398 -12.84268 -12.65718 -12.47171 -12.35737 -12.11430 -12.07365 -11.68826 -11.56426 -11.24686 -10.98578 -10.98080 -10.47573 -10.34934 -10.08387 -9.90079 -9.71605 -8.17563 -5.84510 -0.35454 0.17701 1.47831 1.51453 1.60857 1.62919 1.84248 2.04045 2.31220 2.74246 2.99733 3.20537 3.23489 3.46691 3.73139 3.79759 3.87109 3.92098 4.00865 4.01791 4.08958 4.31820 4.34998 4.45357 4.48811 4.63641 4.64871 4.74069 4.76831 4.82854 4.97700 5.00259 5.03802 5.10571 5.16583 5.19913 5.36268 5.43753 5.44815 5.52120 5.58395 5.80900 6.23977 6.44780 6.82957 6.95102 7.14477 7.62881 8.02258 8.76813 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.003994 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.165419 B = 7009.512208 C = 8021.491630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.457 5.457 3 C -0.344 4.344 4 H 0.126 0.874 5 C -0.013 4.013 6 N -0.907 5.907 7 Si 0.992 3.008 8 H -0.265 1.265 9 H -0.290 1.290 10 H -0.257 1.257 11 C 0.439 3.561 12 O -0.650 6.650 13 C -0.078 4.078 14 C -0.101 4.101 15 C 0.121 3.879 16 N -0.599 5.599 17 C 0.563 3.437 18 O -0.573 6.573 19 C -0.198 4.198 20 C -0.029 4.029 21 C -0.163 4.163 22 C 0.116 3.884 23 N -0.509 5.509 24 C 0.115 3.885 25 C 0.090 3.910 26 C -0.120 4.120 27 H 0.026 0.974 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.267 0.733 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.181 0.819 38 H 0.194 0.806 39 H 0.169 0.831 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.290 -1.093 8.330 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.174 5.174 3 C -0.471 4.471 4 H 0.144 0.856 5 C -0.214 4.214 6 N -0.547 5.547 7 Si 0.815 3.185 8 H -0.190 1.190 9 H -0.216 1.216 10 H -0.181 1.181 11 C 0.229 3.771 12 O -0.540 6.540 13 C -0.099 4.099 14 C -0.140 4.140 15 C -0.001 4.001 16 N -0.330 5.330 17 C 0.353 3.647 18 O -0.454 6.454 19 C -0.203 4.203 20 C -0.056 4.056 21 C -0.183 4.183 22 C -0.040 4.040 23 N -0.218 5.218 24 C -0.042 4.042 25 C -0.031 4.031 26 C -0.159 4.159 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.169 0.831 37 H 0.198 0.802 38 H 0.211 0.789 39 H 0.186 0.814 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.112 0.888 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.412 -1.490 8.523 19.443 hybrid contribution -0.142 0.267 -0.858 0.910 sum 17.270 -1.223 7.665 18.934 Atomic orbital electron populations 1.21282 0.80938 0.96359 1.02105 1.44006 1.06026 1.05825 1.61510 1.20244 0.93617 0.82491 1.50718 0.85624 1.26244 0.96436 1.02984 0.95693 1.70354 1.07549 1.27982 1.48821 0.84984 0.77668 0.76144 0.79654 1.18996 1.21611 1.18088 1.20771 0.91072 0.82717 0.82525 1.90487 1.71398 1.32746 1.59358 1.20931 0.90813 0.98555 0.99572 1.21592 0.94468 0.95529 1.02411 1.21663 0.93244 1.00797 0.84395 1.48098 1.44917 1.20310 1.19678 1.18410 0.78429 0.83078 0.84828 1.90741 1.53023 1.25847 1.75776 1.20900 0.98268 1.05335 0.95833 1.21923 0.94840 0.93526 0.95271 1.22537 1.02707 0.98601 0.94413 1.23683 0.87265 0.92357 1.00740 1.67833 1.23242 1.20005 1.10710 1.23408 0.99504 0.91226 0.90016 1.22538 0.92798 0.83866 1.03944 1.21851 0.95531 1.03371 0.95137 0.95579 0.92360 0.93527 0.92293 0.88196 0.90789 0.93260 0.89379 0.88928 0.83146 0.80174 0.78930 0.81418 0.88572 0.86685 0.88770 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.04 8.87 127.77 1.13 8.17 16 2 N -0.46 -22.75 3.03 -658.89 -1.99 -24.75 16 3 C -0.34 -16.04 8.34 84.04 0.70 -15.34 16 4 H 0.13 5.12 5.16 -2.91 -0.02 5.10 16 5 C -0.01 -0.61 5.45 84.93 0.46 -0.15 16 6 N -0.91 -46.24 9.44 21.66 0.20 -46.04 16 7 Si 0.99 36.69 29.56 68.60 2.03 38.71 16 8 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 9 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 11 C 0.44 20.70 6.91 87.66 0.61 21.30 16 12 O -0.65 -34.86 15.35 -3.07 -0.05 -34.91 16 13 C -0.08 -2.74 1.63 -11.51 -0.02 -2.76 16 14 C -0.10 -3.30 4.69 30.67 0.14 -3.16 16 15 C 0.12 3.22 6.41 86.36 0.55 3.77 16 16 N -0.60 -15.69 2.98 -822.21 -2.45 -18.14 16 17 C 0.56 15.82 7.43 86.79 0.64 16.46 16 18 O -0.57 -19.40 16.28 -3.91 -0.06 -19.46 16 19 C -0.20 -4.62 5.47 -19.99 -0.11 -4.72 16 20 C -0.03 -0.53 9.75 22.73 0.22 -0.31 16 21 C -0.16 -2.00 10.10 22.33 0.23 -1.78 16 22 C 0.12 1.69 11.17 84.71 0.95 2.64 16 23 N -0.51 -11.13 10.35 -194.75 -2.01 -13.15 16 24 C 0.12 2.67 8.61 85.02 0.73 3.40 16 25 C 0.09 2.11 5.52 86.36 0.48 2.59 16 26 C -0.12 -3.66 4.69 30.67 0.14 -3.51 16 27 H 0.03 1.33 6.92 -2.39 -0.02 1.31 16 28 H 0.06 3.08 6.95 -2.39 -0.02 3.06 16 29 H 0.05 2.47 7.14 -2.39 -0.02 2.46 16 30 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 31 H 0.10 3.31 7.21 -2.39 -0.02 3.29 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.05 1.81 8.03 -2.39 -0.02 1.80 16 34 H 0.09 2.46 7.05 -2.38 -0.02 2.44 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.15 2.45 8.02 -2.91 -0.02 2.42 16 37 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.17 3.98 4.98 -2.91 -0.01 3.97 16 40 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.12 2.45 3.51 -2.39 -0.01 2.44 16 42 H 0.09 3.05 6.17 -2.39 -0.01 3.03 16 43 H 0.05 1.79 7.66 -2.39 -0.02 1.77 16 Total: -1.00 -67.97 340.95 3.57 -64.40 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 1.05 Total: 26.72 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 6.86 Total: 26.61 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -6.25 Total: -102.07 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.11 Total: -54.37 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.71 kcal Total: -67.97 3.57 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318118784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.540 kcal (2) G-P(sol) polarization free energy of solvation -67.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds