Wall clock time and date at job start Tue Mar 31 2020 11:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99621 * 2 1 4 4 C 1.53002 * 109.46488 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46894 * 179.97438 * 4 3 2 6 6 C 1.34951 * 126.03610 * 124.99811 * 5 4 3 7 7 C 1.35319 * 107.74354 * 180.02562 * 6 5 4 8 8 C 1.50707 * 126.03660 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47040 * 89.99954 * 8 7 6 10 10 C 1.39777 * 120.00307 * 179.97438 * 9 8 7 11 11 C 1.38943 * 120.00781 * 180.02562 * 10 9 8 12 12 C 1.38014 * 119.99201 * 180.27893 * 11 10 9 13 13 C 1.38893 * 120.00778 * 359.49313 * 12 11 10 14 14 O 1.35796 * 119.99965 * 180.23531 * 13 12 11 15 15 C 1.34809 * 117.00833 * 174.73324 * 14 13 12 16 16 H 1.08003 * 119.99228 * 5.05017 * 15 14 13 17 17 C 1.38622 * 120.00389 * 185.05605 * 15 14 13 18 18 N 1.31580 * 119.99604 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47232 * 119.99830 * 19 17 15 22 22 H 1.48498 * 109.47434 * 239.99936 * 19 17 15 23 23 C 1.38905 * 120.01236 * 0.50727 * 13 12 11 24 24 C 1.38011 * 120.00235 * 359.74666 * 23 13 12 25 25 C 1.39862 * 107.92455 * 0.26296 * 7 6 5 26 26 N 1.30844 * 108.20154 * 359.55756 * 25 7 6 27 27 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46406 * 299.99466 * 1 2 3 29 29 H 1.08996 * 109.47216 * 59.99534 * 1 2 3 30 30 H 1.08999 * 109.47155 * 60.00774 * 3 2 1 31 31 H 1.09000 * 109.47404 * 300.00317 * 3 2 1 32 32 H 1.09000 * 109.47623 * 60.00498 * 4 3 2 33 33 H 1.09000 * 109.47224 * 300.00019 * 4 3 2 34 34 H 1.08003 * 126.12931 * 0.04752 * 6 5 4 35 35 H 1.08997 * 109.47149 * 330.00590 * 8 7 6 36 36 H 1.08999 * 109.47341 * 210.00039 * 8 7 6 37 37 H 0.97000 * 119.99990 * 0.02562 * 9 8 7 38 38 H 1.08000 * 120.00621 * 0.02562 * 11 10 9 39 39 H 1.08008 * 119.99318 * 179.72823 * 12 11 10 40 40 H 0.97008 * 119.99295 * 180.02562 * 18 17 15 41 41 H 1.07991 * 119.99944 * 179.73156 * 23 13 12 42 42 H 1.07997 * 120.00056 * 179.97438 * 24 23 13 43 43 H 1.08001 * 125.90368 * 179.73017 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 5.0264 2.9939 0.8922 7 6 5.3259 4.2668 0.5441 8 6 6.2841 5.1807 1.2638 9 7 7.6283 5.0169 0.7046 10 6 8.6931 5.7656 1.2139 11 6 9.9679 5.6108 0.6833 12 6 11.0202 6.3459 1.1903 13 6 10.8030 7.2482 2.2237 14 8 11.8376 7.9749 2.7192 15 6 11.5415 8.9095 3.6445 16 1 10.5323 8.9976 4.0191 17 6 12.5321 9.7575 4.1149 18 7 13.7613 9.6504 3.6580 19 14 12.1215 11.0529 5.3965 20 1 10.6799 10.9675 5.7425 21 1 12.9371 10.8194 6.6153 22 1 12.4211 12.4012 4.8512 23 6 9.5287 7.4032 2.7544 24 6 8.4771 6.6644 2.2513 25 6 4.5841 4.5867 -0.5976 26 7 3.8721 3.5401 -0.9290 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8568 0.6439 -0.8909 33 1 3.8574 0.6435 0.8891 34 1 5.4315 2.4518 1.7339 35 1 6.2987 4.9294 2.3243 36 1 5.9625 6.2147 1.1398 37 1 7.7792 4.3895 -0.0196 38 1 10.1361 4.9122 -0.1231 39 1 12.0119 6.2224 0.7807 40 1 14.4546 10.2435 3.9875 41 1 9.3609 8.1016 3.5608 42 1 7.4864 6.7847 2.6642 43 1 4.5986 5.5331 -1.1177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318724691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:10 Heat of formation + Delta-G solvation = 43.310269 kcal Electronic energy + Delta-G solvation = -24279.716673 eV Core-core repulsion = 20521.134684 eV Total energy + Delta-G solvation = -3758.581989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56358 -38.94681 -38.52357 -37.03158 -34.91109 -33.78794 -32.05861 -30.83439 -30.12461 -29.86934 -27.52887 -26.69642 -25.19526 -24.72198 -23.83632 -21.93779 -21.09823 -20.70727 -20.21059 -17.94955 -17.67736 -17.19649 -16.82977 -16.33569 -15.94405 -15.73635 -15.30667 -14.82655 -14.49211 -14.39983 -14.15636 -13.90797 -13.78865 -13.51639 -13.36663 -12.87119 -12.72571 -12.59568 -12.50371 -12.27341 -11.97453 -11.90001 -11.51738 -11.41399 -11.24926 -10.96561 -10.77208 -10.51889 -10.32474 -10.31208 -9.75994 -9.18056 -9.11346 -8.79734 -8.39078 -8.11219 -6.33019 -6.28280 -3.85530 1.52235 1.96500 2.26125 2.44289 2.63697 3.20565 3.21893 3.23903 3.27027 4.07588 4.09092 4.17505 4.34338 4.51587 4.60518 4.68835 4.74150 4.78040 4.79444 5.01957 5.09455 5.10223 5.12503 5.23867 5.28030 5.47345 5.52259 5.67669 5.78015 5.83207 6.00875 6.26944 6.32063 6.36479 6.44316 6.54955 6.64753 6.88862 7.04909 7.16392 7.36902 7.39182 7.52478 7.68447 8.06638 8.15924 8.34086 9.17593 9.93046 10.90294 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034789 B = 0.001768 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.657887 B =15832.455503 C =16237.121794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.051 3.949 4 C 0.139 3.861 5 N -0.375 5.375 6 C 0.077 3.923 7 C -0.247 4.247 8 C 0.213 3.787 9 N -0.756 5.756 10 C 0.126 3.874 11 C -0.145 4.145 12 C -0.148 4.148 13 C 0.112 3.888 14 O -0.190 6.190 15 C -0.385 4.385 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.191 4.191 24 C -0.145 4.145 25 C 0.067 3.933 26 N -0.300 5.300 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.176 0.824 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.390 0.610 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.266 0.734 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.017 -16.416 -6.181 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.026 4.026 4 C 0.017 3.983 5 N -0.158 5.158 6 C -0.070 4.070 7 C -0.259 4.259 8 C 0.087 3.913 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.167 4.167 12 C -0.168 4.168 13 C 0.059 3.941 14 O -0.095 6.095 15 C -0.462 4.462 16 H 0.106 0.894 17 C -0.168 4.168 18 N -0.506 5.506 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.210 4.210 24 C -0.167 4.167 25 C -0.120 4.120 26 N -0.120 5.120 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.194 0.806 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.223 0.777 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -24.521 -17.047 -6.886 30.648 hybrid contribution 0.127 0.988 0.999 1.411 sum -24.394 -16.059 -5.886 29.793 Atomic orbital electron populations 1.22784 0.79936 1.03139 1.00393 1.87783 1.20600 1.26992 1.95605 1.22667 0.92718 0.85273 1.01978 1.21369 0.92467 0.79174 1.05297 1.48408 1.34126 1.11750 1.21509 1.22467 0.93416 0.95337 0.95745 1.20193 1.07627 0.95971 1.02068 1.19239 0.80431 0.96296 0.95329 1.44342 1.04983 1.47770 1.42161 1.17410 0.87440 0.95725 0.96634 1.20116 0.91190 1.03074 1.02352 1.20002 0.98787 0.99623 0.98420 1.19238 0.87949 0.93411 0.93485 1.83982 1.28965 1.44534 1.52066 1.21281 0.96887 1.10894 1.17123 0.89414 1.25207 0.94796 0.98037 0.98710 1.70065 1.00871 1.37680 1.42020 0.85703 0.78614 0.79844 0.79564 1.19277 1.20379 1.20352 1.21004 0.92604 1.03773 1.03665 1.20285 0.98312 0.99395 0.98758 1.23905 0.94474 0.97841 0.95738 1.77370 1.24532 0.96590 1.13522 0.89143 0.93796 0.93696 0.92660 0.91597 0.88780 0.87648 0.80649 0.92634 0.92281 0.77671 0.87297 0.86562 0.92421 0.85617 0.87513 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.86 10.70 -35.23 -0.38 -3.24 16 3 C 0.05 0.35 6.12 37.16 0.23 0.58 16 4 C 0.14 0.90 6.88 -4.04 -0.03 0.87 16 5 N -0.37 -3.33 3.68 -61.36 -0.23 -3.56 16 6 C 0.08 0.66 11.36 -17.22 -0.20 0.46 16 7 C -0.25 -2.43 5.47 -105.05 -0.57 -3.00 16 8 C 0.21 2.36 5.39 -5.19 -0.03 2.33 16 9 N -0.76 -10.03 5.73 -59.75 -0.34 -10.37 16 10 C 0.13 2.16 6.66 -83.71 -0.56 1.60 16 11 C -0.15 -2.62 9.89 -39.40 -0.39 -3.01 16 12 C -0.15 -3.19 9.98 -39.42 -0.39 -3.58 16 13 C 0.11 2.75 6.65 -39.09 -0.26 2.49 16 14 O -0.19 -5.57 9.75 -0.04 0.00 -5.57 16 15 C -0.38 -11.02 9.48 30.87 0.29 -10.72 16 16 H 0.09 2.33 5.20 -52.48 -0.27 2.05 16 17 C 0.04 0.99 5.49 -17.52 -0.10 0.89 16 18 N -0.87 -26.16 13.67 55.48 0.76 -25.41 16 19 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.19 -4.20 9.16 -39.42 -0.36 -4.56 16 24 C -0.15 -2.68 9.30 -39.40 -0.37 -3.04 16 25 C 0.07 0.68 11.96 -17.37 -0.21 0.47 16 26 N -0.30 -3.24 12.42 30.62 0.38 -2.86 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.48 8.07 -51.93 -0.42 0.06 16 34 H 0.18 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.06 0.61 7.95 -51.93 -0.41 0.20 16 36 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 37 H 0.39 4.76 8.48 -40.82 -0.35 4.42 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 2.78 5.63 -52.49 -0.30 2.49 16 42 H 0.11 1.69 6.73 -52.49 -0.35 1.34 16 43 H 0.19 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -33.81 371.03 -6.94 -40.75 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.87 Total: 5.59 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.82 Total: -16.95 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.57 Total: -42.19 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.38 Total: -8.81 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.81 -6.94 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318724691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.057 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds