Wall clock time and date at job start Tue Mar 31 2020 11:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99621 * 2 1 4 4 C 1.53002 * 109.46488 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46894 * 179.97438 * 4 3 2 6 6 C 1.34951 * 126.03610 * 124.99811 * 5 4 3 7 7 C 1.35319 * 107.74354 * 180.02562 * 6 5 4 8 8 C 1.50707 * 126.03660 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47040 * 89.99954 * 8 7 6 10 10 C 1.39777 * 120.00307 * 179.97438 * 9 8 7 11 11 C 1.38943 * 120.00781 * 180.02562 * 10 9 8 12 12 C 1.38014 * 119.99201 * 180.27893 * 11 10 9 13 13 C 1.38893 * 120.00778 * 359.49313 * 12 11 10 14 14 O 1.35796 * 119.99965 * 180.23531 * 13 12 11 15 15 C 1.34809 * 117.00833 * 174.73324 * 14 13 12 16 16 H 1.08003 * 119.99228 * 5.05017 * 15 14 13 17 17 C 1.38622 * 120.00389 * 185.05605 * 15 14 13 18 18 N 1.31580 * 119.99604 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47232 * 119.99830 * 19 17 15 22 22 H 1.48498 * 109.47434 * 239.99936 * 19 17 15 23 23 C 1.38905 * 120.01236 * 0.50727 * 13 12 11 24 24 C 1.38011 * 120.00235 * 359.74666 * 23 13 12 25 25 C 1.39862 * 107.92455 * 0.26296 * 7 6 5 26 26 N 1.30844 * 108.20154 * 359.55756 * 25 7 6 27 27 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46406 * 299.99466 * 1 2 3 29 29 H 1.08996 * 109.47216 * 59.99534 * 1 2 3 30 30 H 1.08999 * 109.47155 * 60.00774 * 3 2 1 31 31 H 1.09000 * 109.47404 * 300.00317 * 3 2 1 32 32 H 1.09000 * 109.47623 * 60.00498 * 4 3 2 33 33 H 1.09000 * 109.47224 * 300.00019 * 4 3 2 34 34 H 1.08003 * 126.12931 * 0.04752 * 6 5 4 35 35 H 1.08997 * 109.47149 * 330.00590 * 8 7 6 36 36 H 1.08999 * 109.47341 * 210.00039 * 8 7 6 37 37 H 0.97000 * 119.99990 * 0.02562 * 9 8 7 38 38 H 1.08000 * 120.00621 * 0.02562 * 11 10 9 39 39 H 1.08008 * 119.99318 * 179.72823 * 12 11 10 40 40 H 0.97008 * 119.99295 * 180.02562 * 18 17 15 41 41 H 1.07991 * 119.99944 * 179.73156 * 23 13 12 42 42 H 1.07997 * 120.00056 * 179.97438 * 24 23 13 43 43 H 1.08001 * 125.90368 * 179.73017 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 5.0264 2.9939 0.8922 7 6 5.3259 4.2668 0.5441 8 6 6.2841 5.1807 1.2638 9 7 7.6283 5.0169 0.7046 10 6 8.6931 5.7656 1.2139 11 6 9.9679 5.6108 0.6833 12 6 11.0202 6.3459 1.1903 13 6 10.8030 7.2482 2.2237 14 8 11.8376 7.9749 2.7192 15 6 11.5415 8.9095 3.6445 16 1 10.5323 8.9976 4.0191 17 6 12.5321 9.7575 4.1149 18 7 13.7613 9.6504 3.6580 19 14 12.1215 11.0529 5.3965 20 1 10.6799 10.9675 5.7425 21 1 12.9371 10.8194 6.6153 22 1 12.4211 12.4012 4.8512 23 6 9.5287 7.4032 2.7544 24 6 8.4771 6.6644 2.2513 25 6 4.5841 4.5867 -0.5976 26 7 3.8721 3.5401 -0.9290 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8568 0.6439 -0.8909 33 1 3.8574 0.6435 0.8891 34 1 5.4315 2.4518 1.7339 35 1 6.2987 4.9294 2.3243 36 1 5.9625 6.2147 1.1398 37 1 7.7792 4.3895 -0.0196 38 1 10.1361 4.9122 -0.1231 39 1 12.0119 6.2224 0.7807 40 1 14.4546 10.2435 3.9875 41 1 9.3609 8.1016 3.5608 42 1 7.4864 6.7847 2.6642 43 1 4.5986 5.5331 -1.1177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318724691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:09 Heat of formation + Delta-G solvation = 20.252504 kcal Electronic energy + Delta-G solvation = -24280.716533 eV Core-core repulsion = 20521.134684 eV Total energy + Delta-G solvation = -3759.581849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.25717 -40.62457 -39.03330 -38.64930 -36.06509 -34.65560 -34.02186 -31.83408 -31.65237 -30.59931 -28.74099 -27.38119 -26.99223 -25.82898 -24.44436 -23.48667 -22.19261 -21.74031 -21.09773 -19.77689 -18.93614 -18.24423 -17.51663 -17.30989 -16.92808 -16.52645 -16.30533 -16.18483 -15.64725 -15.48330 -15.34737 -15.15704 -15.09842 -14.78593 -14.38085 -14.26479 -14.02396 -13.65738 -13.44410 -13.35812 -13.06277 -12.92652 -12.81584 -12.56784 -12.50212 -12.34521 -12.19977 -12.05109 -11.56609 -11.03087 -10.86918 -10.79933 -10.45416 -10.10253 -9.70692 -9.52517 -8.35972 -7.84347 -5.98971 0.65654 0.85577 1.00432 1.38058 1.38977 1.48044 1.57114 1.67731 2.25422 2.76072 2.96376 3.00745 3.31451 3.56588 3.73761 3.85524 3.91729 4.00703 4.19369 4.19914 4.24594 4.28886 4.40399 4.43633 4.51744 4.56919 4.62977 4.63866 4.80541 4.80709 4.84037 4.88749 5.02518 5.17833 5.22462 5.32434 5.58276 5.61586 5.62401 5.85257 5.94623 6.05472 6.06932 6.15921 6.67393 6.71311 7.09668 7.14250 7.98523 8.88943 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034789 B = 0.001768 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.657887 B =15832.455503 C =16237.121794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.058 3.942 4 C 0.135 3.865 5 N -0.374 5.374 6 C 0.087 3.913 7 C -0.260 4.260 8 C 0.213 3.787 9 N -0.741 5.741 10 C 0.157 3.843 11 C -0.144 4.144 12 C -0.155 4.155 13 C 0.058 3.942 14 O -0.245 6.245 15 C -0.403 4.403 16 H 0.099 0.901 17 C -0.030 4.030 18 N -0.928 5.928 19 Si 1.017 2.983 20 H -0.251 1.251 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.193 4.193 24 C -0.148 4.148 25 C 0.062 3.938 26 N -0.329 5.329 27 H 0.104 0.896 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.204 0.796 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.400 0.600 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.268 0.732 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.024 -17.914 -5.948 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.020 4.020 4 C 0.014 3.986 5 N -0.157 5.157 6 C -0.060 4.060 7 C -0.272 4.272 8 C 0.088 3.912 9 N -0.375 5.375 10 C 0.056 3.944 11 C -0.167 4.167 12 C -0.174 4.174 13 C 0.009 3.991 14 O -0.154 6.154 15 C -0.480 4.480 16 H 0.116 0.884 17 C -0.226 4.226 18 N -0.568 5.568 19 Si 0.837 3.163 20 H -0.175 1.175 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.213 4.213 24 C -0.170 4.170 25 C -0.125 4.125 26 N -0.150 5.150 27 H 0.122 0.878 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.148 0.852 34 H 0.221 0.779 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.235 0.765 38 H 0.161 0.839 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.156 0.844 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -27.623 -18.613 -6.701 33.976 hybrid contribution 0.756 1.139 0.724 1.547 sum -26.866 -17.474 -5.977 32.602 Atomic orbital electron populations 1.22964 0.78774 1.04264 1.00886 1.87757 1.21959 1.27149 1.95661 1.22561 0.93016 0.85098 1.01325 1.21565 0.92165 0.78276 1.06556 1.48585 1.33989 1.12055 1.21049 1.22906 0.92332 0.95019 0.95750 1.20048 1.08185 0.96476 1.02489 1.19325 0.79137 0.96903 0.95815 1.44484 1.04942 1.46441 1.41663 1.17520 0.88112 0.94037 0.94775 1.20414 0.90608 1.02821 1.02815 1.20214 0.99874 0.99475 0.97873 1.19748 0.88506 0.95093 0.95774 1.83928 1.31411 1.46285 1.53734 1.21796 0.97647 1.11208 1.17343 0.88405 1.26516 0.94442 1.00410 1.01196 1.70220 1.02306 1.39624 1.44639 0.84551 0.79237 0.76278 0.76270 1.17461 1.19571 1.19626 1.21055 0.92635 1.04113 1.03467 1.20515 0.98638 0.98907 0.98989 1.24166 0.94229 0.98174 0.95909 1.77350 1.25493 0.97376 1.14776 0.87785 0.93099 0.93423 0.92611 0.92941 0.88720 0.85205 0.77928 0.91689 0.92045 0.76522 0.83858 0.87063 0.92260 0.86544 0.84372 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.27 10.70 -148.98 -1.59 -6.86 16 3 C 0.06 0.69 6.12 71.98 0.44 1.13 16 4 C 0.14 1.42 6.88 86.38 0.59 2.01 16 5 N -0.37 -5.61 3.68 -348.05 -1.28 -6.89 16 6 C 0.09 1.17 11.36 83.54 0.95 2.11 16 7 C -0.26 -4.20 5.47 -20.14 -0.11 -4.31 16 8 C 0.21 3.85 5.39 85.63 0.46 4.32 16 9 N -0.74 -16.50 5.73 -342.96 -1.96 -18.47 16 10 C 0.16 4.86 6.66 38.21 0.25 5.12 16 11 C -0.14 -4.89 9.89 22.39 0.22 -4.67 16 12 C -0.15 -6.73 9.98 22.37 0.22 -6.50 16 13 C 0.06 2.97 6.65 22.59 0.15 3.12 16 14 O -0.25 -15.24 9.75 -23.04 -0.22 -15.47 16 15 C -0.40 -24.15 9.48 67.91 0.64 -23.50 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 17 C -0.03 -1.74 5.49 84.82 0.47 -1.28 16 18 N -0.93 -58.65 13.67 21.61 0.30 -58.35 16 19 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 C -0.19 -8.54 9.16 22.38 0.20 -8.33 16 24 C -0.15 -5.11 9.30 22.39 0.21 -4.90 16 25 C 0.06 1.09 11.96 85.23 1.02 2.10 16 26 N -0.33 -6.45 12.42 -57.02 -0.71 -7.16 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 0.72 8.07 -2.39 -0.02 0.70 16 34 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.06 1.13 7.95 -2.39 -0.02 1.11 16 36 H 0.06 1.15 7.95 -2.39 -0.02 1.13 16 37 H 0.40 7.93 8.48 -92.71 -0.79 7.14 16 38 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.12 5.26 5.63 -2.92 -0.02 5.24 16 42 H 0.14 3.87 6.73 -2.91 -0.02 3.85 16 43 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -77.86 371.03 3.77 -74.09 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.25 Total: 25.08 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 6.98 Total: -32.12 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -3.66 Total: -90.88 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.82 Total: -22.33 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.86 3.77 -74.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318724691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.344 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds