Wall clock time and date at job start Tue Mar 31 2020 11:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46508 * 119.99859 * 2 1 4 4 C 1.50694 * 109.47003 * 276.32044 * 3 2 1 5 5 N 1.30831 * 125.96409 * 86.41690 * 4 3 2 6 6 C 1.33239 * 109.82902 * 180.12207 * 5 4 3 7 7 N 1.30715 * 108.94768 * 359.59009 * 6 5 4 8 8 N 1.34434 * 125.95966 * 266.08548 * 4 3 2 9 9 C 1.46500 * 126.82272 * 0.02562 * 8 4 3 10 10 C 1.53000 * 109.47148 * 262.74731 * 9 8 4 11 11 F 1.39901 * 109.47401 * 61.39836 * 10 9 8 12 12 F 1.39896 * 109.47140 * 181.40015 * 10 9 8 13 13 C 1.34772 * 120.00326 * 179.97438 * 2 1 3 14 14 O 1.21588 * 120.00507 * 179.97438 * 13 2 1 15 15 N 1.34778 * 119.99789 * 0.02562 * 13 2 1 16 16 C 1.46498 * 119.99861 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.47191 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47385 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00239 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99825 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00342 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46855 * 60.00319 * 22 20 18 24 24 H 1.48496 * 109.47247 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47183 * 300.00228 * 22 20 18 26 26 H 1.08998 * 109.47111 * 94.06511 * 1 2 3 27 27 H 1.08997 * 109.46715 * 214.06562 * 1 2 3 28 28 H 1.09004 * 109.46993 * 334.06435 * 1 2 3 29 29 H 1.09002 * 109.47023 * 156.31594 * 3 2 1 30 30 H 1.09002 * 109.47011 * 36.31996 * 3 2 1 31 31 H 1.08007 * 125.52274 * 179.85603 * 6 5 4 32 32 H 1.08994 * 109.47223 * 22.74429 * 9 8 4 33 33 H 1.09004 * 109.47133 * 142.74519 * 9 8 4 34 34 H 1.09005 * 109.47046 * 301.39697 * 10 9 8 35 35 H 0.97006 * 120.00115 * 0.02562 * 15 13 2 36 36 H 1.08995 * 109.47633 * 299.99978 * 16 15 13 37 37 H 1.09000 * 109.47208 * 60.00872 * 16 15 13 38 38 H 1.09003 * 109.47438 * 300.00795 * 17 16 15 39 39 H 1.09006 * 109.46839 * 60.00035 * 17 16 15 40 40 H 0.97007 * 119.99993 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3132 1.7820 -1.4121 5 7 1.4292 2.5160 -2.0377 6 6 1.8560 2.7845 -3.2710 7 7 3.0267 2.2299 -3.4452 8 7 3.3457 1.5707 -2.2468 9 6 4.5619 0.8050 -1.9627 10 6 5.6814 1.7617 -1.5473 11 9 5.3068 2.4403 -0.3827 12 9 6.8516 1.0337 -1.3068 13 6 2.1390 -1.1671 0.0005 14 8 3.3548 -1.1672 0.0001 15 7 1.4651 -2.3343 0.0005 16 6 2.1976 -3.6030 0.0005 17 6 1.2034 -4.7660 0.0012 18 6 1.9569 -6.0711 0.0005 19 1 3.0370 -6.0710 0.0002 20 6 1.2676 -7.2651 0.0015 21 7 -0.0475 -7.2652 0.0024 22 14 2.2016 -8.8829 0.0014 23 1 3.0562 -8.9611 1.2134 24 1 1.2366 -10.0116 0.0019 25 1 3.0545 -8.9620 -1.2117 26 1 -0.3633 -0.0728 -1.0251 27 1 -0.3633 -0.8513 0.5756 28 1 -0.3633 0.9242 0.4495 29 1 3.1943 1.1129 0.4128 30 1 1.6621 1.9975 0.6087 31 1 1.3230 3.3696 -4.0060 32 1 4.3673 0.1007 -1.1540 33 1 4.8640 0.2582 -2.8559 34 1 5.8591 2.4817 -2.3462 35 1 0.4950 -2.3344 -0.0002 36 1 2.8243 -3.6608 -0.8894 37 1 2.8242 -3.6608 0.8906 38 1 0.5770 -4.7081 0.8913 39 1 0.5764 -4.7085 -0.8887 40 1 -0.5325 -8.1053 0.0035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322262272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:04 Heat of formation + Delta-G solvation = -38.676231 kcal Electronic energy + Delta-G solvation = -26945.650931 eV Core-core repulsion = 22661.576962 eV Total energy + Delta-G solvation = -4284.073969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.31065 -47.32406 -42.39516 -40.02844 -35.96462 -35.11298 -34.78003 -33.00335 -31.94611 -29.88652 -29.48396 -27.89322 -26.28876 -24.52648 -24.12210 -22.09780 -21.39133 -20.83359 -19.88152 -18.19839 -17.95393 -17.78189 -17.40002 -16.73840 -16.43235 -16.12022 -15.87740 -15.27472 -14.81635 -14.58223 -14.32395 -14.14618 -14.03944 -13.88000 -13.67086 -13.46789 -13.42949 -12.92844 -12.83424 -12.68115 -12.34562 -12.31367 -11.87922 -11.60278 -11.23547 -11.05970 -10.69341 -10.39614 -10.31180 -10.21360 -9.99913 -9.89572 -9.62157 -9.33859 -9.07901 -8.56129 -8.37932 -6.13153 -4.16338 1.18616 1.82831 2.48262 2.94741 3.20949 3.28809 3.32964 3.35873 3.36693 3.80364 3.84313 4.06027 4.13712 4.31780 4.39831 4.45448 4.58973 4.90059 4.99556 5.16373 5.17899 5.24085 5.37228 5.38783 5.62644 5.95498 6.07262 6.15456 6.27471 6.29279 6.41240 6.67103 6.83089 6.90798 7.47869 7.55923 7.81319 7.84818 8.07697 8.24252 8.69394 8.89440 9.48769 10.98404 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.003072 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.707285 B = 9113.558830 C =10040.005619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.631 5.631 3 C 0.207 3.793 4 C 0.277 3.723 5 N -0.532 5.532 6 C 0.203 3.797 7 N -0.322 5.322 8 N -0.367 5.367 9 C 0.060 3.940 10 C 0.257 3.743 11 F -0.199 7.199 12 F -0.190 7.190 13 C 0.703 3.297 14 O -0.598 6.598 15 N -0.730 5.730 16 C 0.138 3.862 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.219 0.781 32 H 0.158 0.842 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.396 0.604 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 21.640 -2.665 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.370 5.370 3 C 0.079 3.921 4 C -0.001 4.001 5 N -0.260 5.260 6 C -0.100 4.100 7 N -0.149 5.149 8 N -0.157 5.157 9 C -0.064 4.064 10 C 0.202 3.798 11 F -0.181 7.181 12 F -0.171 7.171 13 C 0.404 3.596 14 O -0.478 6.478 15 N -0.383 5.383 16 C 0.015 3.985 17 C -0.024 4.024 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.236 0.764 32 H 0.175 0.825 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.231 0.769 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.249 21.568 -3.144 22.206 hybrid contribution -0.023 -1.005 -0.042 1.006 sum 4.225 20.562 -3.187 21.233 Atomic orbital electron populations 1.21778 0.78676 1.03504 1.02175 1.46985 1.06979 1.03925 1.79091 1.19765 1.00725 0.85245 0.86334 1.25096 0.84614 0.94012 0.96386 1.70522 1.29491 1.19201 1.06811 1.26006 0.91289 0.98497 0.94232 1.78057 1.18338 1.15380 1.03160 1.50013 1.16128 1.39700 1.09883 1.23303 0.81478 0.93693 1.07943 1.22109 0.82136 0.89991 0.85556 1.93005 1.91515 1.80956 1.52601 1.93039 1.49348 1.79350 1.95384 1.16014 0.85357 0.80484 0.77739 1.90702 1.11676 1.86065 1.59347 1.45698 1.10257 1.05167 1.77202 1.21671 0.95754 0.80244 1.00817 1.19320 0.94224 0.91035 0.97837 1.20988 0.93217 0.90299 1.51658 0.92249 1.24988 0.94890 0.99414 0.94905 1.69942 1.06106 1.27049 1.50165 0.86567 0.79524 0.82610 0.78810 1.20057 1.21228 1.20107 0.92551 0.90915 0.90135 0.86928 0.86653 0.76427 0.82482 0.85719 0.86767 0.76851 0.92676 0.92427 0.95915 0.96025 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.12 59.85 0.61 1.37 16 2 N -0.63 -7.66 2.86 -188.73 -0.54 -8.20 16 3 C 0.21 2.24 5.72 -5.19 -0.03 2.21 16 4 C 0.28 3.37 7.55 -155.69 -1.18 2.20 16 5 N -0.53 -6.45 11.19 -11.97 -0.13 -6.58 16 6 C 0.20 2.21 13.03 -91.81 -1.20 1.02 16 7 N -0.32 -3.99 12.70 29.29 0.37 -3.61 16 8 N -0.37 -4.53 3.58 -58.34 -0.21 -4.74 16 9 C 0.06 0.68 6.44 -4.04 -0.03 0.65 16 10 C 0.26 2.58 5.56 37.16 0.21 2.79 16 11 F -0.20 -2.27 17.06 2.25 0.04 -2.23 16 12 F -0.19 -2.16 17.34 2.25 0.04 -2.12 16 13 C 0.70 11.13 8.28 -86.92 -0.72 10.41 16 14 O -0.60 -10.77 12.97 5.29 0.07 -10.70 16 15 N -0.73 -12.13 5.42 -65.23 -0.35 -12.49 16 16 C 0.14 2.80 5.61 -4.04 -0.02 2.77 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 22 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.64 6.58 -51.93 -0.34 0.30 16 28 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 29 H 0.11 1.30 6.35 -51.93 -0.33 0.97 16 30 H 0.12 0.94 7.97 -51.93 -0.41 0.52 16 31 H 0.22 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.16 2.13 4.20 -51.93 -0.22 1.91 16 33 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 5.83 6.29 -40.82 -0.26 5.57 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -32.55 349.65 -7.54 -40.09 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.89 Total: 3.58 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -2.91 Total: 10.66 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.13 Total: -60.58 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.08 Total: -4.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.55 -7.54 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322262272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.416 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds