Wall clock time and date at job start Tue Mar 31 2020 11:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46508 * 119.99859 * 2 1 4 4 C 1.50694 * 109.47003 * 276.32044 * 3 2 1 5 5 N 1.30831 * 125.96409 * 86.41690 * 4 3 2 6 6 C 1.33239 * 109.82902 * 180.12207 * 5 4 3 7 7 N 1.30715 * 108.94768 * 359.59009 * 6 5 4 8 8 N 1.34434 * 125.95966 * 266.08548 * 4 3 2 9 9 C 1.46500 * 126.82272 * 0.02562 * 8 4 3 10 10 C 1.53000 * 109.47148 * 262.74731 * 9 8 4 11 11 F 1.39901 * 109.47401 * 61.39836 * 10 9 8 12 12 F 1.39896 * 109.47140 * 181.40015 * 10 9 8 13 13 C 1.34772 * 120.00326 * 179.97438 * 2 1 3 14 14 O 1.21588 * 120.00507 * 179.97438 * 13 2 1 15 15 N 1.34778 * 119.99789 * 0.02562 * 13 2 1 16 16 C 1.46498 * 119.99861 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.47191 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47385 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00239 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99825 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00342 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46855 * 60.00319 * 22 20 18 24 24 H 1.48496 * 109.47247 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47183 * 300.00228 * 22 20 18 26 26 H 1.08998 * 109.47111 * 94.06511 * 1 2 3 27 27 H 1.08997 * 109.46715 * 214.06562 * 1 2 3 28 28 H 1.09004 * 109.46993 * 334.06435 * 1 2 3 29 29 H 1.09002 * 109.47023 * 156.31594 * 3 2 1 30 30 H 1.09002 * 109.47011 * 36.31996 * 3 2 1 31 31 H 1.08007 * 125.52274 * 179.85603 * 6 5 4 32 32 H 1.08994 * 109.47223 * 22.74429 * 9 8 4 33 33 H 1.09004 * 109.47133 * 142.74519 * 9 8 4 34 34 H 1.09005 * 109.47046 * 301.39697 * 10 9 8 35 35 H 0.97006 * 120.00115 * 0.02562 * 15 13 2 36 36 H 1.08995 * 109.47633 * 299.99978 * 16 15 13 37 37 H 1.09000 * 109.47208 * 60.00872 * 16 15 13 38 38 H 1.09003 * 109.47438 * 300.00795 * 17 16 15 39 39 H 1.09006 * 109.46839 * 60.00035 * 17 16 15 40 40 H 0.97007 * 119.99993 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3132 1.7820 -1.4121 5 7 1.4292 2.5160 -2.0377 6 6 1.8560 2.7845 -3.2710 7 7 3.0267 2.2299 -3.4452 8 7 3.3457 1.5707 -2.2468 9 6 4.5619 0.8050 -1.9627 10 6 5.6814 1.7617 -1.5473 11 9 5.3068 2.4403 -0.3827 12 9 6.8516 1.0337 -1.3068 13 6 2.1390 -1.1671 0.0005 14 8 3.3548 -1.1672 0.0001 15 7 1.4651 -2.3343 0.0005 16 6 2.1976 -3.6030 0.0005 17 6 1.2034 -4.7660 0.0012 18 6 1.9569 -6.0711 0.0005 19 1 3.0370 -6.0710 0.0002 20 6 1.2676 -7.2651 0.0015 21 7 -0.0475 -7.2652 0.0024 22 14 2.2016 -8.8829 0.0014 23 1 3.0562 -8.9611 1.2134 24 1 1.2366 -10.0116 0.0019 25 1 3.0545 -8.9620 -1.2117 26 1 -0.3633 -0.0728 -1.0251 27 1 -0.3633 -0.8513 0.5756 28 1 -0.3633 0.9242 0.4495 29 1 3.1943 1.1129 0.4128 30 1 1.6621 1.9975 0.6087 31 1 1.3230 3.3696 -4.0060 32 1 4.3673 0.1007 -1.1540 33 1 4.8640 0.2582 -2.8559 34 1 5.8591 2.4817 -2.3462 35 1 0.4950 -2.3344 -0.0002 36 1 2.8243 -3.6608 -0.8894 37 1 2.8242 -3.6608 0.8906 38 1 0.5770 -4.7081 0.8913 39 1 0.5764 -4.7085 -0.8887 40 1 -0.5325 -8.1053 0.0035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322262272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:03 Heat of formation + Delta-G solvation = -58.514542 kcal Electronic energy + Delta-G solvation = -26946.511185 eV Core-core repulsion = 22661.576962 eV Total energy + Delta-G solvation = -4284.934223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.16865 -48.19111 -43.28006 -41.24206 -37.16268 -36.50200 -35.76179 -34.85827 -32.99781 -31.42053 -30.52041 -28.80537 -27.50700 -26.14867 -25.03657 -23.08929 -22.89896 -21.99163 -21.07203 -19.16367 -19.01198 -18.63634 -18.49254 -18.27575 -17.61632 -17.17304 -17.04062 -16.51049 -16.28113 -15.71991 -15.60783 -15.31184 -15.03764 -14.99123 -14.68000 -14.54959 -14.43751 -14.25971 -13.92729 -13.75211 -13.55304 -13.31110 -13.08654 -12.91840 -12.70943 -12.53910 -12.46533 -12.21495 -11.66417 -11.49861 -11.25887 -11.21131 -10.90787 -10.78811 -10.59571 -10.25051 -9.74442 -8.23559 -6.33769 0.28033 0.95151 1.42439 1.44641 1.50067 1.53793 1.94676 2.00508 2.41114 2.52896 2.92775 3.01941 3.06520 3.11665 3.20730 3.50878 3.63524 3.76802 4.07805 4.21970 4.30288 4.36160 4.43301 4.51854 4.52468 4.63119 4.86983 4.90198 5.08921 5.25283 5.31620 5.33594 5.49310 5.54125 5.59294 5.74450 5.83166 6.16857 6.79236 6.85922 6.93619 7.35661 7.43769 8.88110 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.003072 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.707285 B = 9113.558830 C =10040.005619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.622 5.622 3 C 0.206 3.794 4 C 0.269 3.731 5 N -0.540 5.540 6 C 0.202 3.798 7 N -0.341 5.341 8 N -0.374 5.374 9 C 0.061 3.939 10 C 0.262 3.738 11 F -0.207 7.207 12 F -0.198 7.198 13 C 0.699 3.301 14 O -0.621 6.621 15 N -0.729 5.729 16 C 0.160 3.840 17 C 0.024 3.976 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.009 3.991 21 N -0.927 5.927 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.148 0.852 31 H 0.254 0.746 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.406 0.594 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.009 0.991 39 H 0.005 0.995 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 22.631 -2.863 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C 0.079 3.921 4 C -0.010 4.010 5 N -0.268 5.268 6 C -0.100 4.100 7 N -0.168 5.168 8 N -0.164 5.164 9 C -0.063 4.063 10 C 0.207 3.793 11 F -0.188 7.188 12 F -0.180 7.180 13 C 0.401 3.599 14 O -0.503 6.503 15 N -0.384 5.384 16 C 0.036 3.964 17 C -0.014 4.014 18 C -0.585 4.585 19 H 0.078 0.922 20 C -0.190 4.190 21 N -0.566 5.566 22 Si 0.787 3.213 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.194 1.194 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.165 0.835 31 H 0.270 0.730 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.243 0.757 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.166 22.604 -3.342 23.227 hybrid contribution -0.051 -1.229 -0.003 1.230 sum 4.116 21.376 -3.345 22.024 Atomic orbital electron populations 1.21983 0.76753 1.05301 1.02389 1.46974 1.08092 1.03103 1.77776 1.19976 1.00763 0.85043 0.86301 1.25311 0.84745 0.94174 0.96737 1.70548 1.29531 1.19375 1.07348 1.26770 0.90894 0.97899 0.94430 1.78039 1.19280 1.16123 1.03374 1.50086 1.16389 1.39882 1.10077 1.23216 0.81810 0.93772 1.07494 1.22238 0.81284 0.89996 0.85741 1.92985 1.91577 1.81031 1.53252 1.93020 1.49779 1.79703 1.95465 1.16103 0.85124 0.81087 0.77588 1.90703 1.12847 1.86591 1.60204 1.45395 1.10585 1.04478 1.77955 1.21107 0.94558 0.80797 0.99901 1.19120 0.94271 0.91757 0.96240 1.21434 0.93643 0.91845 1.51559 0.92153 1.25843 0.95751 1.03014 0.94430 1.70049 1.07538 1.28033 1.50983 0.85531 0.78327 0.78257 0.79141 1.19256 1.20718 1.19420 0.92895 0.90458 0.87259 0.87837 0.83483 0.73026 0.84550 0.85054 0.84156 0.75734 0.93693 0.93217 0.97255 0.97651 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.12 127.77 1.29 2.59 16 2 N -0.62 -14.27 2.86 -869.30 -2.49 -16.76 16 3 C 0.21 4.14 5.72 85.63 0.49 4.63 16 4 C 0.27 6.14 7.55 138.22 1.04 7.19 16 5 N -0.54 -11.95 11.19 -191.77 -2.15 -14.10 16 6 C 0.20 3.99 13.03 180.77 2.36 6.35 16 7 N -0.34 -7.93 12.70 -61.24 -0.78 -8.71 16 8 N -0.37 -8.86 3.58 -338.49 -1.21 -10.07 16 9 C 0.06 1.36 6.44 86.38 0.56 1.92 16 10 C 0.26 5.06 5.56 71.98 0.40 5.46 16 11 F -0.21 -4.57 17.06 44.97 0.77 -3.80 16 12 F -0.20 -4.42 17.34 44.97 0.78 -3.64 16 13 C 0.70 21.89 8.28 179.06 1.48 23.37 16 14 O -0.62 -22.53 12.97 -3.99 -0.05 -22.58 16 15 N -0.73 -24.20 5.42 -478.54 -2.59 -26.80 16 16 C 0.16 6.61 5.61 86.38 0.48 7.10 16 17 C 0.02 1.16 5.09 29.85 0.15 1.31 16 18 C -0.55 -29.89 9.11 25.60 0.23 -29.66 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 20 C 0.01 0.47 5.46 84.65 0.46 0.93 16 21 N -0.93 -53.62 13.29 21.45 0.28 -53.34 16 22 Si 0.96 42.98 29.54 68.60 2.03 45.00 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.24 6.58 -2.39 -0.02 1.22 16 28 H 0.11 1.23 7.91 -2.39 -0.02 1.21 16 29 H 0.10 2.31 6.35 -2.39 -0.02 2.30 16 30 H 0.15 1.99 7.97 -2.39 -0.02 1.97 16 31 H 0.25 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.14 3.74 4.20 -2.39 -0.01 3.73 16 33 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.14 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.41 11.80 6.29 -92.70 -0.58 11.22 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -69.47 349.65 4.05 -65.42 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.51 Total: 18.19 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 8.95 Total: 31.19 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -8.93 Total: -129.77 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 1.55 Total: -7.45 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -69.47 4.05 -65.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322262272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.909 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds