Wall clock time and date at job start Tue Mar 31 2020 11:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39709 * 123.89085 * 2 1 4 4 C 1.39387 * 130.74409 * 0.04492 * 3 2 1 5 5 C 1.37853 * 120.22751 * 179.77600 * 4 3 2 6 6 C 1.38889 * 120.29887 * 0.47989 * 5 4 3 7 7 N 1.40074 * 120.16651 * 179.75831 * 6 5 4 8 8 C 1.34772 * 120.00355 * 214.78205 * 7 6 5 9 9 O 1.21291 * 120.00132 * 355.35794 * 8 7 6 10 10 C 1.50704 * 119.99831 * 175.62847 * 8 7 6 11 11 H 1.08994 * 109.47239 * 319.72563 * 10 8 7 12 12 N 1.46901 * 109.47002 * 199.72204 * 10 8 7 13 13 C 1.53006 * 109.46609 * 79.72747 * 10 8 7 14 14 C 1.53000 * 109.46741 * 184.99813 * 13 10 8 15 15 C 1.50704 * 109.47114 * 180.02562 * 14 13 10 16 16 H 1.07995 * 119.99842 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99860 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00311 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47044 * 59.99815 * 19 17 15 21 21 H 1.48495 * 109.47320 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47067 * 300.00147 * 19 17 15 23 23 C 1.38981 * 119.68108 * 359.48389 * 6 5 4 24 24 C 1.37625 * 119.85900 * 0.27510 * 23 6 5 25 25 C 1.51148 * 132.77720 * 179.97438 * 24 23 6 26 26 C 1.34360 * 123.88759 * 180.02562 * 2 1 3 27 27 O 1.21296 * 126.43629 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46592 * 300.00088 * 1 2 3 30 30 H 1.09000 * 109.46845 * 59.99891 * 1 2 3 31 31 H 1.08003 * 119.88278 * 359.97196 * 4 3 2 32 32 H 1.08001 * 119.85567 * 180.25542 * 5 4 3 33 33 H 0.97001 * 119.99685 * 34.77576 * 7 6 5 34 34 H 1.00900 * 110.99756 * 176.04615 * 12 10 8 35 35 H 1.00899 * 111.00517 * 300.00708 * 12 10 8 36 36 H 1.08995 * 109.47349 * 304.99404 * 13 10 8 37 37 H 1.08996 * 109.47400 * 65.00305 * 13 10 8 38 38 H 1.09002 * 109.47187 * 299.99765 * 14 13 10 39 39 H 1.08995 * 109.47261 * 59.99920 * 14 13 10 40 40 H 0.96998 * 119.99902 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.07441 * 180.25662 * 23 6 5 42 42 H 1.08996 * 110.50367 * 298.67685 * 25 24 23 43 43 H 1.09001 * 110.50227 * 61.37104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2440 1.1597 0.0000 4 6 1.8747 2.5038 0.0008 5 6 2.8393 3.4886 0.0053 6 6 4.1863 3.1501 -0.0011 7 7 5.1642 4.1530 -0.0016 8 6 6.3184 3.9685 -0.6725 9 8 6.5466 2.9031 -1.2053 10 6 7.3282 5.0841 -0.7555 11 1 6.8112 6.0317 -0.9065 12 7 8.2383 4.8379 -1.8821 13 6 8.1313 5.1428 0.5455 14 6 9.0695 6.3509 0.5116 15 6 9.8610 6.4084 1.7927 16 1 9.7097 5.6585 2.5550 17 6 10.7775 7.4190 1.9920 18 7 10.9614 8.3324 1.0639 19 14 11.7581 7.4906 3.5803 20 1 12.5575 6.2475 3.7250 21 1 12.6688 8.6631 3.5474 22 1 10.8281 7.6178 4.7310 23 6 4.5595 1.8113 -0.0011 24 6 3.5937 0.8308 -0.0005 25 6 3.6637 -0.6791 -0.0009 26 6 2.2141 -1.1154 -0.0005 27 8 1.8057 -2.2575 -0.0014 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.8291 2.7745 0.0012 32 1 2.5464 4.5281 0.0101 33 1 5.0105 4.9804 0.4808 34 1 8.8846 5.6039 -1.9988 35 1 8.7299 3.9645 -1.7657 36 1 7.4487 5.2365 1.3900 37 1 8.7178 4.2303 0.6519 38 1 9.7522 6.2572 -0.3330 39 1 8.4830 7.2635 0.4051 40 1 11.6060 9.0436 1.2043 41 1 5.6051 1.5409 -0.0018 42 1 4.1701 -1.0376 -0.8970 43 1 4.1708 -1.0379 0.8948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325812942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:08 Heat of formation + Delta-G solvation = -37.779964 kcal Electronic energy + Delta-G solvation = -25413.778496 eV Core-core repulsion = 21651.680170 eV Total energy + Delta-G solvation = -3762.098326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78004 -40.29369 -38.47309 -36.53695 -35.52491 -34.25251 -33.14815 -32.91837 -29.99404 -29.95329 -28.31207 -27.01727 -26.33781 -24.19919 -22.74552 -21.94252 -20.81783 -20.55508 -19.86941 -17.90752 -17.65110 -17.18354 -16.65770 -16.59704 -16.27418 -15.11683 -14.89822 -14.83112 -14.57955 -14.48127 -14.07380 -14.04850 -13.97616 -13.42544 -13.34858 -13.30014 -13.08455 -12.98032 -12.70436 -12.46434 -12.23435 -11.81912 -11.47414 -11.18896 -11.00572 -10.90868 -10.75581 -10.42967 -10.07596 -10.01262 -9.66385 -9.41042 -9.30689 -9.07927 -8.49199 -8.31123 -7.77800 -6.13675 -4.17252 0.86015 1.08824 2.13106 2.42521 2.69940 2.97556 3.25026 3.30362 3.32452 3.53443 3.87078 4.10711 4.34917 4.54289 4.68057 4.78486 4.87058 4.92565 5.02894 5.06109 5.07641 5.12379 5.22468 5.22750 5.38954 5.45100 5.61514 5.69929 5.71277 5.75821 6.12009 6.15902 6.21307 6.33799 6.40813 6.56388 6.77693 6.86178 7.25685 7.43363 7.47951 7.55405 7.59136 7.79831 7.82984 8.19168 8.25027 8.88419 9.48061 10.97075 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002281 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.048002 B =12272.887847 C =12438.871714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.552 5.552 3 C 0.117 3.883 4 C -0.115 4.115 5 C -0.113 4.113 6 C 0.140 3.860 7 N -0.675 5.675 8 C 0.526 3.474 9 O -0.517 6.517 10 C 0.077 3.923 11 H 0.100 0.900 12 N -0.830 5.830 13 C -0.139 4.139 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.113 4.113 26 C 0.527 3.473 27 O -0.510 6.510 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.414 0.586 34 H 0.357 0.643 35 H 0.346 0.654 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.148 0.852 42 H 0.125 0.875 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.790 -10.543 -2.258 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.275 5.275 3 C 0.021 3.979 4 C -0.136 4.136 5 C -0.134 4.134 6 C 0.044 3.956 7 N -0.321 5.321 8 C 0.314 3.686 9 O -0.391 6.391 10 C -0.038 4.038 11 H 0.118 0.882 12 N -0.363 5.363 13 C -0.179 4.179 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.090 4.090 24 C -0.125 4.125 25 C -0.152 4.152 26 C 0.316 3.684 27 O -0.385 6.385 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.251 0.749 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.165 0.835 42 H 0.143 0.857 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.458 -11.810 -3.186 23.836 hybrid contribution 1.088 0.772 1.868 2.296 sum -19.370 -11.038 -1.318 22.333 Atomic orbital electron populations 1.21824 0.77672 1.04459 1.02585 1.45699 1.07177 1.05579 1.69069 1.18131 0.90108 0.87444 1.02190 1.20053 0.99754 0.88759 1.05032 1.20640 0.90553 0.99647 1.02587 1.17573 0.88181 0.88316 1.01525 1.43595 1.16722 1.19359 1.52441 1.21163 0.81421 0.89950 0.76018 1.90634 1.76339 1.27186 1.44957 1.21482 0.93436 0.95721 0.93210 0.88163 1.58737 1.26523 1.08933 1.42094 1.22419 0.98976 1.02282 0.94180 1.19099 0.93407 0.91218 0.97519 1.21126 1.21707 1.11123 1.02460 0.92741 1.25010 0.96972 0.95565 0.96728 1.69933 1.35296 1.14320 1.33578 0.86638 0.79991 0.77564 0.83716 1.20204 1.21203 1.20200 1.20394 1.00335 0.89824 0.98458 1.19611 0.92257 0.94729 1.05869 1.21057 0.95132 0.92515 1.06514 1.20662 0.89027 0.83899 0.74792 1.90777 1.79015 1.18924 1.49833 0.89265 0.91145 0.91154 0.85400 0.84665 0.74910 0.82748 0.84031 0.92421 0.92483 0.96343 0.96262 0.92770 0.83469 0.85705 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.87 59.85 0.65 1.16 16 2 N -0.55 -5.40 3.14 -120.56 -0.38 -5.78 16 3 C 0.12 1.17 6.70 -83.59 -0.56 0.61 16 4 C -0.11 -0.97 9.83 -39.29 -0.39 -1.36 16 5 C -0.11 -1.01 9.94 -39.48 -0.39 -1.40 16 6 C 0.14 1.58 6.31 -83.57 -0.53 1.06 16 7 N -0.68 -7.76 5.35 -9.79 -0.05 -7.82 16 8 C 0.53 7.71 6.93 -10.99 -0.08 7.64 16 9 O -0.52 -8.89 13.70 5.55 0.08 -8.81 16 10 C 0.08 1.17 3.21 -68.86 -0.22 0.95 16 11 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 12 N -0.83 -13.12 8.94 -5.65 -0.05 -13.17 16 13 C -0.14 -2.49 4.78 -26.73 -0.13 -2.62 16 14 C 0.02 0.57 4.74 -27.88 -0.13 0.43 16 15 C -0.53 -13.89 9.11 -34.44 -0.31 -14.21 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.07 -0.85 8.69 -39.53 -0.34 -1.19 16 24 C -0.12 -1.32 6.34 -104.37 -0.66 -1.98 16 25 C -0.11 -1.08 6.88 -28.48 -0.20 -1.27 16 26 C 0.53 5.96 8.24 -10.84 -0.09 5.87 16 27 O -0.51 -7.21 17.43 5.54 0.10 -7.11 16 28 H 0.09 0.63 7.57 -51.93 -0.39 0.24 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.41 3.71 8.82 -40.82 -0.36 3.34 16 34 H 0.36 5.70 7.55 -39.29 -0.30 5.40 16 35 H 0.35 5.53 8.58 -39.29 -0.34 5.19 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.15 2.01 6.24 -52.49 -0.33 1.69 16 42 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -32.68 363.63 -8.43 -41.10 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.84 Total: 9.75 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -3.47 Total: -4.79 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.26 Total: -51.35 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.17 Total: -15.92 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.68 -8.43 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325812942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.325 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds