Wall clock time and date at job start Tue Mar 31 2020 11:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39709 * 123.89085 * 2 1 4 4 C 1.39387 * 130.74409 * 0.04492 * 3 2 1 5 5 C 1.37853 * 120.22751 * 179.77600 * 4 3 2 6 6 C 1.38889 * 120.29887 * 0.47989 * 5 4 3 7 7 N 1.40074 * 120.16651 * 179.75831 * 6 5 4 8 8 C 1.34772 * 120.00355 * 214.78205 * 7 6 5 9 9 O 1.21291 * 120.00132 * 355.35794 * 8 7 6 10 10 C 1.50704 * 119.99831 * 175.62847 * 8 7 6 11 11 H 1.08994 * 109.47239 * 319.72563 * 10 8 7 12 12 N 1.46901 * 109.47002 * 199.72204 * 10 8 7 13 13 C 1.53006 * 109.46609 * 79.72747 * 10 8 7 14 14 C 1.53000 * 109.46741 * 184.99813 * 13 10 8 15 15 C 1.50704 * 109.47114 * 180.02562 * 14 13 10 16 16 H 1.07995 * 119.99842 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99860 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00311 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47044 * 59.99815 * 19 17 15 21 21 H 1.48495 * 109.47320 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47067 * 300.00147 * 19 17 15 23 23 C 1.38981 * 119.68108 * 359.48389 * 6 5 4 24 24 C 1.37625 * 119.85900 * 0.27510 * 23 6 5 25 25 C 1.51148 * 132.77720 * 179.97438 * 24 23 6 26 26 C 1.34360 * 123.88759 * 180.02562 * 2 1 3 27 27 O 1.21296 * 126.43629 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46592 * 300.00088 * 1 2 3 30 30 H 1.09000 * 109.46845 * 59.99891 * 1 2 3 31 31 H 1.08003 * 119.88278 * 359.97196 * 4 3 2 32 32 H 1.08001 * 119.85567 * 180.25542 * 5 4 3 33 33 H 0.97001 * 119.99685 * 34.77576 * 7 6 5 34 34 H 1.00900 * 110.99756 * 176.04615 * 12 10 8 35 35 H 1.00899 * 111.00517 * 300.00708 * 12 10 8 36 36 H 1.08995 * 109.47349 * 304.99404 * 13 10 8 37 37 H 1.08996 * 109.47400 * 65.00305 * 13 10 8 38 38 H 1.09002 * 109.47187 * 299.99765 * 14 13 10 39 39 H 1.08995 * 109.47261 * 59.99920 * 14 13 10 40 40 H 0.96998 * 119.99902 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.07441 * 180.25662 * 23 6 5 42 42 H 1.08996 * 110.50367 * 298.67685 * 25 24 23 43 43 H 1.09001 * 110.50227 * 61.37104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2440 1.1597 0.0000 4 6 1.8747 2.5038 0.0008 5 6 2.8393 3.4886 0.0053 6 6 4.1863 3.1501 -0.0011 7 7 5.1642 4.1530 -0.0016 8 6 6.3184 3.9685 -0.6725 9 8 6.5466 2.9031 -1.2053 10 6 7.3282 5.0841 -0.7555 11 1 6.8112 6.0317 -0.9065 12 7 8.2383 4.8379 -1.8821 13 6 8.1313 5.1428 0.5455 14 6 9.0695 6.3509 0.5116 15 6 9.8610 6.4084 1.7927 16 1 9.7097 5.6585 2.5550 17 6 10.7775 7.4190 1.9920 18 7 10.9614 8.3324 1.0639 19 14 11.7581 7.4906 3.5803 20 1 12.5575 6.2475 3.7250 21 1 12.6688 8.6631 3.5474 22 1 10.8281 7.6178 4.7310 23 6 4.5595 1.8113 -0.0011 24 6 3.5937 0.8308 -0.0005 25 6 3.6637 -0.6791 -0.0009 26 6 2.2141 -1.1154 -0.0005 27 8 1.8057 -2.2575 -0.0014 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.8291 2.7745 0.0012 32 1 2.5464 4.5281 0.0101 33 1 5.0105 4.9804 0.4808 34 1 8.8846 5.6039 -1.9988 35 1 8.7299 3.9645 -1.7657 36 1 7.4487 5.2365 1.3900 37 1 8.7178 4.2303 0.6519 38 1 9.7522 6.2572 -0.3330 39 1 8.4830 7.2635 0.4051 40 1 11.6060 9.0436 1.2043 41 1 5.6051 1.5409 -0.0018 42 1 4.1701 -1.0376 -0.8970 43 1 4.1708 -1.0379 0.8948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325812942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:07 Heat of formation + Delta-G solvation = -60.273484 kcal Electronic energy + Delta-G solvation = -25414.753888 eV Core-core repulsion = 21651.680170 eV Total energy + Delta-G solvation = -3763.073718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58136 -41.35306 -39.40778 -37.54982 -36.87917 -35.16255 -34.81387 -33.90141 -31.66800 -30.76905 -29.21264 -28.05769 -27.40618 -25.75297 -23.71421 -22.86226 -22.23936 -21.34101 -21.05355 -19.03057 -18.61426 -18.26023 -17.95528 -17.51258 -17.37922 -16.55094 -16.10681 -16.02305 -15.84065 -15.60642 -15.09212 -15.02774 -14.67453 -14.63415 -14.48358 -14.22130 -14.10382 -13.99641 -13.80952 -13.46020 -13.29742 -13.19221 -12.91541 -12.66331 -12.54298 -12.25324 -11.82921 -11.77040 -11.64463 -11.30609 -11.29647 -10.74732 -10.53800 -10.51024 -9.86628 -9.63797 -8.60848 -8.19874 -6.29729 0.03369 0.32887 1.25015 1.41537 1.42473 1.50340 1.61366 1.70820 1.99901 2.41175 2.74859 3.07342 3.14084 3.33203 3.75193 3.75654 3.83050 4.04978 4.14178 4.17243 4.25530 4.33806 4.38924 4.41160 4.49318 4.62538 4.68727 4.74836 4.84844 4.92136 4.96210 5.00706 5.11797 5.32951 5.39749 5.49331 5.57306 5.68593 5.72830 5.83196 6.04865 6.08893 6.23215 6.44683 6.48945 6.77541 6.86134 7.14073 7.39355 8.90425 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002281 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.048002 B =12272.887847 C =12438.871714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.550 5.550 3 C 0.111 3.889 4 C -0.104 4.104 5 C -0.102 4.102 6 C 0.119 3.881 7 N -0.660 5.660 8 C 0.528 3.472 9 O -0.547 6.547 10 C 0.084 3.916 11 H 0.116 0.884 12 N -0.831 5.831 13 C -0.122 4.122 14 C 0.029 3.971 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.113 4.113 26 C 0.521 3.479 27 O -0.546 6.546 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.428 0.572 34 H 0.354 0.646 35 H 0.344 0.656 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.002 0.998 39 H 0.005 0.995 40 H 0.263 0.737 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.793 -9.881 -1.407 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.272 5.272 3 C 0.015 3.985 4 C -0.125 4.125 5 C -0.122 4.122 6 C 0.024 3.976 7 N -0.306 5.306 8 C 0.316 3.684 9 O -0.423 6.423 10 C -0.031 4.031 11 H 0.134 0.866 12 N -0.363 5.363 13 C -0.162 4.162 14 C -0.008 4.008 15 C -0.582 4.582 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.108 4.108 24 C -0.135 4.135 25 C -0.151 4.151 26 C 0.312 3.688 27 O -0.425 6.425 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.267 0.733 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.507 -11.118 -2.312 25.210 hybrid contribution 1.639 0.572 1.591 2.354 sum -20.869 -10.546 -0.721 23.393 Atomic orbital electron populations 1.22075 0.75820 1.04687 1.04551 1.45803 1.08391 1.05019 1.68006 1.18343 0.89698 0.88213 1.02210 1.20437 1.01396 0.87650 1.02974 1.20961 0.89170 1.01371 1.00713 1.17783 0.89144 0.87782 1.02896 1.43369 1.15812 1.19976 1.51475 1.20917 0.82149 0.89060 0.76281 1.90635 1.77164 1.27998 1.46487 1.21405 0.93344 0.96963 0.91405 0.86614 1.58757 1.26540 1.08717 1.42260 1.22158 0.98410 0.99284 0.96355 1.18971 0.93551 0.92674 0.95585 1.21604 1.22028 1.10915 1.03682 0.92679 1.25836 0.98170 0.95380 0.99901 1.70045 1.36122 1.14998 1.35423 0.85638 0.78631 0.77549 0.80062 1.19763 1.21001 1.19201 1.20278 0.99551 0.90876 1.00125 1.19654 0.92759 0.94968 1.06127 1.21091 0.94536 0.92121 1.07386 1.20854 0.89795 0.83774 0.74389 1.90751 1.79672 1.20250 1.51790 0.90008 0.89053 0.89243 0.82027 0.81564 0.73326 0.83060 0.84251 0.91182 0.93605 0.97954 0.97711 0.92780 0.85740 0.85090 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.87 127.77 1.39 2.15 16 2 N -0.55 -9.82 3.14 -653.95 -2.05 -11.87 16 3 C 0.11 1.98 6.70 38.33 0.26 2.23 16 4 C -0.10 -1.36 9.83 22.46 0.22 -1.14 16 5 C -0.10 -1.44 9.94 22.33 0.22 -1.22 16 6 C 0.12 2.48 6.31 38.16 0.24 2.72 16 7 N -0.66 -14.02 5.35 -303.29 -1.62 -15.64 16 8 C 0.53 15.06 6.93 87.66 0.61 15.67 16 9 O -0.55 -18.85 13.70 -3.06 -0.04 -18.89 16 10 C 0.08 2.50 3.21 44.17 0.14 2.64 16 11 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 12 N -0.83 -26.28 8.94 -171.79 -1.54 -27.82 16 13 C -0.12 -4.34 4.78 30.60 0.15 -4.19 16 14 C 0.03 1.36 4.74 29.85 0.14 1.50 16 15 C -0.54 -28.77 9.11 25.60 0.23 -28.54 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 17 C 0.01 0.31 5.46 84.65 0.46 0.77 16 18 N -0.93 -52.98 13.29 21.45 0.28 -52.70 16 19 Si 0.96 42.32 29.54 68.60 2.03 44.35 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 C -0.09 -2.10 8.69 22.30 0.19 -1.91 16 24 C -0.13 -2.76 6.34 -19.70 -0.12 -2.88 16 25 C -0.11 -2.13 6.88 29.46 0.20 -1.93 16 26 C 0.52 11.59 8.24 87.94 0.72 12.32 16 27 O -0.55 -15.59 17.43 -3.08 -0.05 -15.64 16 28 H 0.08 1.06 7.57 -2.38 -0.02 1.04 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.43 6.57 8.82 -92.71 -0.82 5.75 16 34 H 0.35 11.46 7.55 -89.69 -0.68 10.78 16 35 H 0.34 11.15 8.58 -89.69 -0.77 10.39 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.12 3.54 6.24 -2.91 -0.02 3.52 16 42 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.10 363.63 0.87 -70.22 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -1.19 Total: 29.77 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.06 Total: -1.79 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -4.92 Total: -108.02 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.10 Total: -34.53 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.10 0.87 -70.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325812942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.951 kcal (2) G-P(sol) polarization free energy of solvation -71.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds