Wall clock time and date at job start Tue Mar 31 2020 11:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39710 * 123.88268 * 2 1 4 4 C 1.39385 * 130.74794 * 0.02562 * 3 2 1 5 5 C 1.37861 * 120.22610 * 179.70017 * 4 3 2 6 6 C 1.38897 * 120.29680 * 0.59869 * 5 4 3 7 7 N 1.40068 * 120.15996 * 179.69931 * 6 5 4 8 8 C 1.34772 * 119.99882 * 214.78279 * 7 6 5 9 9 O 1.21294 * 120.00320 * 355.35577 * 8 7 6 10 10 C 1.50706 * 120.00089 * 175.35201 * 8 7 6 11 11 H 1.09002 * 109.46569 * 40.00592 * 10 8 7 12 12 N 1.46900 * 109.46938 * 159.99775 * 10 8 7 13 13 C 1.52994 * 109.47263 * 280.00293 * 10 8 7 14 14 C 1.53001 * 109.46968 * 174.99928 * 13 10 8 15 15 C 1.50700 * 109.47316 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99620 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00328 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99631 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47249 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47059 * 119.99866 * 19 17 15 22 22 H 1.48504 * 109.47060 * 239.99907 * 19 17 15 23 23 C 1.38985 * 119.67776 * 359.42533 * 6 5 4 24 24 C 1.37620 * 119.85923 * 0.27355 * 23 6 5 25 25 C 1.51152 * 132.77075 * 180.02562 * 24 23 6 26 26 C 1.34352 * 123.89035 * 180.02562 * 2 1 3 27 27 O 1.21294 * 126.43391 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46987 * 299.99579 * 1 2 3 30 30 H 1.08999 * 109.47269 * 59.99940 * 1 2 3 31 31 H 1.08000 * 119.88603 * 0.04121 * 4 3 2 32 32 H 1.08000 * 119.85446 * 180.30023 * 5 4 3 33 33 H 0.97000 * 120.00266 * 34.77546 * 7 6 5 34 34 H 1.00900 * 111.00480 * 296.05165 * 12 10 8 35 35 H 1.00900 * 111.00130 * 60.00562 * 12 10 8 36 36 H 1.08998 * 109.47034 * 294.99464 * 13 10 8 37 37 H 1.08993 * 109.47561 * 54.99964 * 13 10 8 38 38 H 1.08998 * 109.46864 * 299.99640 * 14 13 10 39 39 H 1.09003 * 109.47354 * 59.99980 * 14 13 10 40 40 H 0.97004 * 119.99376 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.06505 * 180.25380 * 23 6 5 42 42 H 1.08997 * 110.50234 * 298.65546 * 25 24 23 43 43 H 1.08999 * 110.50230 * 61.34474 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2439 1.1598 0.0000 4 6 1.8745 2.5039 0.0005 5 6 2.8391 3.4887 0.0066 6 6 4.1862 3.1503 -0.0002 7 7 5.1638 4.1533 -0.0003 8 6 6.3179 3.9693 -0.6716 9 8 6.5461 2.9042 -1.2050 10 6 7.3249 5.0871 -0.7595 11 1 7.3809 5.6019 0.1997 12 7 8.6433 4.5330 -1.0953 13 6 6.8957 6.0761 -1.8449 14 6 7.8485 7.2732 -1.8498 15 6 7.4261 8.2471 -2.9194 16 1 6.5640 8.0338 -3.5340 17 6 8.1396 9.4110 -3.1128 18 7 9.1891 9.6709 -2.3641 19 14 7.6155 10.6185 -4.4381 20 1 6.4129 10.0967 -5.1357 21 1 7.2967 11.9287 -3.8160 22 1 8.7200 10.7904 -5.4159 23 6 4.5593 1.8114 -0.0011 24 6 3.5935 0.8310 -0.0010 25 6 3.6637 -0.6789 -0.0013 26 6 2.2142 -1.1153 -0.0005 27 8 1.8058 -2.2574 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.8289 2.7746 0.0016 32 1 2.5461 4.5282 0.0118 33 1 5.0102 4.9804 0.4826 34 1 8.9779 3.9258 -0.3622 35 1 8.6178 4.0503 -1.9810 36 1 6.9255 5.5841 -2.8171 37 1 5.8814 6.4199 -1.6427 38 1 7.8187 7.7652 -0.8776 39 1 8.8629 6.9294 -2.0521 40 1 9.6908 10.4899 -2.4999 41 1 5.6049 1.5412 -0.0022 42 1 4.1702 -1.0373 -0.8974 43 1 4.1708 -1.0377 0.8944 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325812945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:10 Heat of formation + Delta-G solvation = -36.849601 kcal Electronic energy + Delta-G solvation = -25422.582719 eV Core-core repulsion = 21660.524737 eV Total energy + Delta-G solvation = -3762.057982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83144 -40.41178 -38.54664 -36.57478 -35.30093 -34.33219 -33.20161 -32.86452 -30.20543 -29.97826 -28.32619 -27.02062 -26.28973 -24.09534 -22.72033 -21.95706 -20.72763 -20.58696 -19.94358 -17.95103 -17.66958 -17.03947 -16.71269 -16.63359 -16.20024 -15.61793 -15.16000 -14.84363 -14.67563 -14.40473 -14.13703 -14.08771 -13.89575 -13.62747 -13.44085 -13.33994 -13.15996 -12.74266 -12.53265 -12.38397 -12.10210 -11.64312 -11.54205 -11.05834 -10.94867 -10.74927 -10.57676 -10.47597 -10.20913 -9.87627 -9.72707 -9.44998 -9.15632 -9.04135 -8.46986 -8.28962 -7.83289 -5.98478 -4.00736 0.80571 1.03749 2.07645 2.38519 2.55299 2.96754 3.30838 3.38807 3.42266 3.48252 3.82515 4.05299 4.46078 4.50041 4.64644 4.70453 4.77831 4.90115 4.94324 4.98327 5.04242 5.06002 5.20577 5.32992 5.36906 5.40060 5.63474 5.65729 5.69693 5.71925 6.06271 6.13926 6.28627 6.33601 6.50682 6.56308 6.80486 6.99939 7.19452 7.39878 7.54662 7.68049 7.71180 7.90019 8.05274 8.07623 8.42998 9.07353 9.62862 11.12391 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002333 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.073820 B =11997.181752 C =12701.568026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.552 5.552 3 C 0.118 3.882 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.134 3.866 7 N -0.671 5.671 8 C 0.484 3.516 9 O -0.534 6.534 10 C 0.081 3.919 11 H 0.102 0.898 12 N -0.806 5.806 13 C -0.096 4.096 14 C 0.031 3.969 15 C -0.523 4.523 16 H 0.052 0.948 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.070 4.070 24 C -0.123 4.123 25 C -0.113 4.113 26 C 0.526 3.474 27 O -0.510 6.510 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.415 0.585 34 H 0.335 0.665 35 H 0.349 0.651 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.014 0.986 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.146 0.854 42 H 0.125 0.875 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.822 -16.418 9.259 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.275 5.275 3 C 0.022 3.978 4 C -0.135 4.135 5 C -0.132 4.132 6 C 0.039 3.961 7 N -0.317 5.317 8 C 0.271 3.729 9 O -0.409 6.409 10 C -0.035 4.035 11 H 0.120 0.880 12 N -0.333 5.333 13 C -0.134 4.134 14 C -0.006 4.006 15 C -0.561 4.561 16 H 0.071 0.929 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.091 4.091 24 C -0.126 4.126 25 C -0.152 4.152 26 C 0.316 3.684 27 O -0.385 6.385 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.252 0.748 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.163 0.837 42 H 0.142 0.858 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.537 -16.951 8.865 24.026 hybrid contribution -1.056 0.350 -0.486 1.214 sum -15.593 -16.601 8.378 24.268 Atomic orbital electron populations 1.21832 0.77596 1.04494 1.02653 1.45702 1.07227 1.05555 1.69015 1.18135 0.90105 0.87461 1.02059 1.20086 0.99862 0.88749 1.04841 1.20699 0.90601 0.99780 1.02149 1.17646 0.88372 0.88419 1.01677 1.43785 1.16738 1.19123 1.52045 1.23120 0.82681 0.91127 0.75991 1.90646 1.76903 1.27701 1.45696 1.21891 0.86141 0.92476 1.02977 0.88037 1.58980 1.22490 1.43815 1.08058 1.21684 1.00374 0.96372 0.94995 1.19024 0.95050 0.89832 0.96708 1.21298 1.12672 1.04186 1.17941 0.92926 1.24993 0.95049 0.98109 0.96205 1.69982 1.18263 1.25485 1.39384 0.86594 0.78552 0.81180 0.81990 1.19859 1.21092 1.21031 1.20330 1.00138 0.89803 0.98809 1.19606 0.92296 0.94715 1.06020 1.21048 0.95195 0.92486 1.06428 1.20646 0.89007 0.83913 0.74837 1.90778 1.79002 1.18914 1.49798 0.89235 0.91109 0.91094 0.85319 0.84512 0.74816 0.85287 0.83641 0.92710 0.92689 0.96808 0.94613 0.93116 0.83687 0.85750 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.87 59.85 0.65 1.16 16 2 N -0.55 -5.29 3.14 -120.57 -0.38 -5.67 16 3 C 0.12 1.16 6.70 -83.59 -0.56 0.60 16 4 C -0.11 -0.97 9.83 -39.29 -0.39 -1.36 16 5 C -0.11 -1.00 9.94 -39.48 -0.39 -1.40 16 6 C 0.13 1.48 6.31 -83.57 -0.53 0.95 16 7 N -0.67 -7.35 5.35 -9.79 -0.05 -7.40 16 8 C 0.48 6.64 6.92 -10.98 -0.08 6.56 16 9 O -0.53 -8.52 13.70 5.55 0.08 -8.45 16 10 C 0.08 1.21 3.15 -68.86 -0.22 0.99 16 11 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 12 N -0.81 -12.28 8.44 -5.65 -0.05 -12.33 16 13 C -0.10 -1.79 4.78 -26.73 -0.13 -1.92 16 14 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 15 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 C -0.07 -0.81 8.69 -39.53 -0.34 -1.15 16 24 C -0.12 -1.28 6.34 -104.38 -0.66 -1.94 16 25 C -0.11 -1.01 6.88 -28.48 -0.20 -1.21 16 26 C 0.53 5.79 8.24 -10.84 -0.09 5.70 16 27 O -0.51 -7.05 17.43 5.55 0.10 -6.95 16 28 H 0.09 0.63 7.57 -51.93 -0.39 0.23 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.42 3.50 8.82 -40.82 -0.36 3.14 16 34 H 0.34 4.32 9.06 -39.29 -0.36 3.96 16 35 H 0.35 5.43 8.58 -39.29 -0.34 5.10 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.15 1.82 6.24 -52.49 -0.33 1.49 16 42 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -34.04 365.58 -8.50 -42.54 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.95 Total: 7.53 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.47 Total: -5.50 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.26 Total: -50.95 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.17 Total: -15.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.04 -8.50 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325812945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.694 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds