Wall clock time and date at job start Tue Mar 31 2020 11:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39710 * 123.88268 * 2 1 4 4 C 1.39385 * 130.74794 * 0.02562 * 3 2 1 5 5 C 1.37861 * 120.22610 * 179.70017 * 4 3 2 6 6 C 1.38897 * 120.29680 * 0.59869 * 5 4 3 7 7 N 1.40068 * 120.15996 * 179.69931 * 6 5 4 8 8 C 1.34772 * 119.99882 * 214.78279 * 7 6 5 9 9 O 1.21294 * 120.00320 * 355.35577 * 8 7 6 10 10 C 1.50706 * 120.00089 * 175.35201 * 8 7 6 11 11 H 1.09002 * 109.46569 * 40.00592 * 10 8 7 12 12 N 1.46900 * 109.46938 * 159.99775 * 10 8 7 13 13 C 1.52994 * 109.47263 * 280.00293 * 10 8 7 14 14 C 1.53001 * 109.46968 * 174.99928 * 13 10 8 15 15 C 1.50700 * 109.47316 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99620 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00328 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99631 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47249 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47059 * 119.99866 * 19 17 15 22 22 H 1.48504 * 109.47060 * 239.99907 * 19 17 15 23 23 C 1.38985 * 119.67776 * 359.42533 * 6 5 4 24 24 C 1.37620 * 119.85923 * 0.27355 * 23 6 5 25 25 C 1.51152 * 132.77075 * 180.02562 * 24 23 6 26 26 C 1.34352 * 123.89035 * 180.02562 * 2 1 3 27 27 O 1.21294 * 126.43391 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46987 * 299.99579 * 1 2 3 30 30 H 1.08999 * 109.47269 * 59.99940 * 1 2 3 31 31 H 1.08000 * 119.88603 * 0.04121 * 4 3 2 32 32 H 1.08000 * 119.85446 * 180.30023 * 5 4 3 33 33 H 0.97000 * 120.00266 * 34.77546 * 7 6 5 34 34 H 1.00900 * 111.00480 * 296.05165 * 12 10 8 35 35 H 1.00900 * 111.00130 * 60.00562 * 12 10 8 36 36 H 1.08998 * 109.47034 * 294.99464 * 13 10 8 37 37 H 1.08993 * 109.47561 * 54.99964 * 13 10 8 38 38 H 1.08998 * 109.46864 * 299.99640 * 14 13 10 39 39 H 1.09003 * 109.47354 * 59.99980 * 14 13 10 40 40 H 0.97004 * 119.99376 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.06505 * 180.25380 * 23 6 5 42 42 H 1.08997 * 110.50234 * 298.65546 * 25 24 23 43 43 H 1.08999 * 110.50230 * 61.34474 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2439 1.1598 0.0000 4 6 1.8745 2.5039 0.0005 5 6 2.8391 3.4887 0.0066 6 6 4.1862 3.1503 -0.0002 7 7 5.1638 4.1533 -0.0003 8 6 6.3179 3.9693 -0.6716 9 8 6.5461 2.9042 -1.2050 10 6 7.3249 5.0871 -0.7595 11 1 7.3809 5.6019 0.1997 12 7 8.6433 4.5330 -1.0953 13 6 6.8957 6.0761 -1.8449 14 6 7.8485 7.2732 -1.8498 15 6 7.4261 8.2471 -2.9194 16 1 6.5640 8.0338 -3.5340 17 6 8.1396 9.4110 -3.1128 18 7 9.1891 9.6709 -2.3641 19 14 7.6155 10.6185 -4.4381 20 1 6.4129 10.0967 -5.1357 21 1 7.2967 11.9287 -3.8160 22 1 8.7200 10.7904 -5.4159 23 6 4.5593 1.8114 -0.0011 24 6 3.5935 0.8310 -0.0010 25 6 3.6637 -0.6789 -0.0013 26 6 2.2142 -1.1153 -0.0005 27 8 1.8058 -2.2574 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.8289 2.7746 0.0016 32 1 2.5461 4.5282 0.0118 33 1 5.0102 4.9804 0.4826 34 1 8.9779 3.9258 -0.3622 35 1 8.6178 4.0503 -1.9810 36 1 6.9255 5.5841 -2.8171 37 1 5.8814 6.4199 -1.6427 38 1 7.8187 7.7652 -0.8776 39 1 8.8629 6.9294 -2.0521 40 1 9.6908 10.4899 -2.4999 41 1 5.6049 1.5412 -0.0022 42 1 4.1702 -1.0373 -0.8974 43 1 4.1708 -1.0377 0.8944 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325812945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:09 Heat of formation + Delta-G solvation = -60.686236 kcal Electronic energy + Delta-G solvation = -25423.616353 eV Core-core repulsion = 21660.524737 eV Total energy + Delta-G solvation = -3763.091616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60767 -41.42940 -39.44383 -37.50802 -36.70107 -35.19877 -34.78884 -33.92861 -31.90612 -30.77040 -29.19015 -28.05722 -27.43625 -25.59243 -23.71112 -22.84752 -22.16022 -21.35866 -21.14273 -18.95110 -18.55396 -18.26709 -17.87737 -17.48592 -17.39202 -16.93949 -16.49835 -16.10676 -15.66255 -15.65174 -15.09548 -14.93831 -14.78745 -14.65515 -14.27911 -14.22620 -14.13755 -13.90216 -13.78107 -13.40444 -13.31872 -13.21714 -12.81169 -12.50885 -12.29562 -12.22400 -11.90079 -11.67930 -11.54105 -11.32521 -11.19797 -10.96535 -10.55502 -10.47039 -9.90329 -9.62854 -8.63556 -8.11990 -6.21449 0.00397 0.29936 1.21649 1.42883 1.44363 1.52673 1.56409 1.68882 2.04245 2.46291 2.72107 3.05959 3.21618 3.30714 3.57604 3.78142 3.84488 4.02339 4.12424 4.14870 4.31188 4.32704 4.37463 4.39189 4.46911 4.60454 4.72739 4.81533 4.88496 4.92261 4.96749 4.99258 5.27766 5.30794 5.36598 5.54502 5.60720 5.70327 5.88457 6.02136 6.02391 6.12037 6.33204 6.39358 6.55196 6.75600 6.98147 7.06110 7.46722 8.99253 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002333 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.073820 B =11997.181752 C =12701.568026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.551 5.551 3 C 0.111 3.889 4 C -0.105 4.105 5 C -0.104 4.104 6 C 0.115 3.885 7 N -0.657 5.657 8 C 0.490 3.510 9 O -0.558 6.558 10 C 0.089 3.911 11 H 0.117 0.883 12 N -0.819 5.819 13 C -0.082 4.082 14 C 0.038 3.962 15 C -0.540 4.540 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.929 5.929 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.283 1.283 23 C -0.085 4.085 24 C -0.132 4.132 25 C -0.111 4.111 26 C 0.520 3.480 27 O -0.546 6.546 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.428 0.572 34 H 0.348 0.652 35 H 0.346 0.654 36 H 0.041 0.959 37 H 0.071 0.929 38 H -0.003 1.003 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.080 -15.691 9.343 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.273 5.273 3 C 0.015 3.985 4 C -0.126 4.126 5 C -0.125 4.125 6 C 0.020 3.980 7 N -0.303 5.303 8 C 0.277 3.723 9 O -0.436 6.436 10 C -0.027 4.027 11 H 0.135 0.865 12 N -0.348 5.348 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.578 4.578 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.783 3.217 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.209 1.209 23 C -0.105 4.105 24 C -0.135 4.135 25 C -0.149 4.149 26 C 0.311 3.689 27 O -0.424 6.424 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.267 0.733 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.015 0.985 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.836 -16.198 8.977 25.028 hybrid contribution -0.389 0.116 -0.476 0.626 sum -17.225 -16.082 8.501 25.052 Atomic orbital electron populations 1.22067 0.75910 1.04698 1.04489 1.45816 1.08377 1.05073 1.68014 1.18337 0.89862 0.88116 1.02165 1.20427 1.01335 0.87808 1.03050 1.20976 0.89525 1.01239 1.00759 1.17832 0.89162 0.88058 1.02911 1.43562 1.15826 1.19700 1.51202 1.22640 0.83157 0.90249 0.76247 1.90649 1.77463 1.28451 1.46992 1.21660 0.86484 0.92334 1.02183 0.86517 1.58964 1.23020 1.44350 1.08501 1.21401 0.99808 0.94995 0.95873 1.18840 0.94780 0.91369 0.94924 1.21767 1.12648 1.04891 1.18521 0.92609 1.25878 0.95089 1.00199 0.98506 1.70107 1.19496 1.26221 1.41177 0.85520 0.78341 0.78810 0.79072 1.18785 1.20363 1.20922 1.20252 0.99610 0.90585 1.00080 1.19677 0.92661 0.95066 1.06076 1.21084 0.94414 0.91951 1.07482 1.20887 0.89868 0.83740 0.74386 1.90754 1.79688 1.20236 1.51754 0.89933 0.89021 0.89457 0.82303 0.81974 0.73271 0.83828 0.84022 0.93983 0.91008 0.98482 0.97641 0.93005 0.85322 0.85102 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.87 127.77 1.39 2.16 16 2 N -0.55 -9.66 3.14 -653.98 -2.05 -11.71 16 3 C 0.11 1.94 6.70 38.32 0.26 2.20 16 4 C -0.11 -1.43 9.83 22.46 0.22 -1.21 16 5 C -0.10 -1.54 9.94 22.34 0.22 -1.32 16 6 C 0.12 2.31 6.31 38.16 0.24 2.55 16 7 N -0.66 -13.13 5.35 -303.28 -1.62 -14.75 16 8 C 0.49 12.95 6.92 87.66 0.61 13.56 16 9 O -0.56 -17.64 13.70 -3.07 -0.04 -17.68 16 10 C 0.09 2.60 3.15 44.17 0.14 2.74 16 11 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 12 N -0.82 -25.05 8.44 -171.80 -1.45 -26.50 16 13 C -0.08 -3.03 4.78 30.59 0.15 -2.89 16 14 C 0.04 1.88 4.86 29.85 0.15 2.02 16 15 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 16 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 19 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 C -0.08 -1.88 8.69 22.30 0.19 -1.69 16 24 C -0.13 -2.59 6.34 -19.71 -0.12 -2.72 16 25 C -0.11 -1.93 6.88 29.46 0.20 -1.73 16 26 C 0.52 11.17 8.24 87.94 0.72 11.90 16 27 O -0.55 -15.19 17.43 -3.07 -0.05 -15.24 16 28 H 0.08 1.06 7.57 -2.39 -0.02 1.05 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.43 6.13 8.82 -92.71 -0.82 5.31 16 34 H 0.35 8.92 9.06 -89.69 -0.81 8.11 16 35 H 0.35 10.93 8.58 -89.69 -0.77 10.16 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.01 0.28 7.75 -2.39 -0.02 0.27 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.89 16 41 H 0.13 3.26 6.24 -2.91 -0.02 3.24 16 42 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.13 365.58 0.82 -73.31 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -1.33 Total: 25.51 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.06 Total: -3.25 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.84 Total: -108.10 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.10 Total: -32.92 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.13 0.82 -73.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325812945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.629 kcal (2) G-P(sol) polarization free energy of solvation -74.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds