Wall clock time and date at job start Tue Mar 31 2020 11:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00072 * 2 1 4 4 C 1.46902 * 110.99899 * 123.95466 * 2 1 3 5 5 C 1.52995 * 109.47311 * 75.80664 * 4 2 1 6 6 O 1.42898 * 109.46976 * 64.03851 * 5 4 2 7 7 N 1.41606 * 114.00228 * 184.88635 * 6 5 4 8 8 C 1.34767 * 120.00280 * 185.04197 * 7 6 5 9 9 O 1.21666 * 120.00354 * 5.75720 * 8 7 6 10 10 C 1.46894 * 120.00243 * 185.75365 * 8 7 6 11 11 C 1.36117 * 125.44039 * 186.54208 * 10 8 7 12 12 C 1.41699 * 107.75012 * 180.25835 * 11 10 8 13 13 C 1.40023 * 133.35174 * 179.75661 * 12 11 10 14 14 C 1.36577 * 119.82931 * 179.97438 * 13 12 11 15 15 C 1.38853 * 120.60321 * 359.97438 * 14 13 12 16 16 C 1.37850 * 120.63177 * 359.97438 * 15 14 13 17 17 C 1.39089 * 119.81126 * 0.02562 * 16 15 14 18 18 N 1.37840 * 133.16180 * 180.02562 * 17 16 15 19 19 C 1.36890 * 125.61880 * 359.96719 * 18 17 16 20 20 H 1.07996 * 120.00163 * 225.28274 * 19 18 17 21 21 C 1.39018 * 120.00059 * 45.28129 * 19 18 17 22 22 N 1.31343 * 120.00361 * 195.36855 * 21 19 18 23 23 Si 1.86803 * 119.99850 * 15.09622 * 21 19 18 24 24 H 1.48504 * 109.46811 * 264.79140 * 23 21 19 25 25 H 1.48500 * 109.47170 * 24.78807 * 23 21 19 26 26 H 1.48498 * 109.47282 * 144.79287 * 23 21 19 27 27 H 1.09006 * 109.47411 * 296.04517 * 1 2 3 28 28 H 1.08995 * 109.47323 * 56.04788 * 1 2 3 29 29 H 1.09006 * 109.47060 * 176.04851 * 1 2 3 30 30 H 1.09001 * 109.47369 * 188.51436 * 3 2 1 31 31 H 1.08997 * 109.47166 * 308.51846 * 3 2 1 32 32 H 1.09005 * 109.47119 * 68.52102 * 3 2 1 33 33 H 1.08997 * 109.47175 * 315.80668 * 4 2 1 34 34 H 1.09002 * 109.46930 * 195.81030 * 4 2 1 35 35 H 1.09000 * 109.47385 * 304.03710 * 5 4 2 36 36 H 1.09004 * 109.47058 * 184.03375 * 5 4 2 37 37 H 0.97003 * 119.99632 * 5.04614 * 7 6 5 38 38 H 1.08000 * 126.12579 * 359.97438 * 11 10 8 39 39 H 1.08001 * 120.08364 * 359.97223 * 13 12 11 40 40 H 1.08003 * 119.69593 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.68687 * 180.02562 * 15 14 13 42 42 H 1.07991 * 120.09524 * 179.97438 * 16 15 14 43 43 H 0.96993 * 120.00476 * 179.72710 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8480 -2.2627 0.8566 6 8 2.6541 -2.6178 -0.2685 7 7 2.5056 -3.9641 -0.6816 8 6 3.2831 -4.4565 -1.6661 9 8 4.1820 -3.7791 -2.1279 10 6 3.0454 -5.8114 -2.1816 11 6 3.8342 -6.4643 -3.0784 12 6 3.2565 -7.7362 -3.3161 13 6 3.6148 -8.8176 -4.1303 14 6 2.8385 -9.9412 -4.1478 15 6 1.6951 -10.0227 -3.3642 16 6 1.3226 -8.9716 -2.5539 17 6 2.0972 -7.8170 -2.5192 18 7 1.9886 -6.6290 -1.8285 19 6 0.9935 -6.3089 -0.9446 20 1 0.5208 -5.3390 -0.9918 21 6 0.5914 -7.2322 0.0137 22 7 -0.5413 -7.0610 0.6561 23 14 1.6586 -8.7203 0.3826 24 1 1.1839 -9.8797 -0.4149 25 1 3.0685 -8.4188 0.0267 26 1 1.5718 -9.0455 1.8289 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0744 1.3464 -0.1522 31 1 1.5281 1.9399 -0.8040 32 1 1.7743 1.8455 0.9563 33 1 1.4377 -0.5088 2.0381 34 1 3.0487 -0.5253 1.2814 35 1 0.8040 -2.4910 0.6421 36 1 2.1721 -2.8298 1.7292 37 1 1.8442 -4.5318 -0.2560 38 1 4.7360 -6.0799 -3.5316 39 1 4.5026 -8.7633 -4.7428 40 1 3.1170 -10.7742 -4.7763 41 1 1.0923 -10.9185 -3.3892 42 1 0.4313 -9.0442 -1.9483 43 1 -0.8238 -7.7073 1.3219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328691446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:04 Heat of formation + Delta-G solvation = 49.417581 kcal Electronic energy + Delta-G solvation = -26643.178697 eV Core-core repulsion = 22884.861540 eV Total energy + Delta-G solvation = -3758.317156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.86637 -38.58875 -37.80976 -36.28855 -36.06334 -33.76036 -31.98194 -31.43916 -29.64322 -29.06896 -28.02226 -27.65090 -25.05239 -24.11568 -23.20813 -21.28469 -21.15057 -20.48472 -19.29914 -18.58948 -17.43276 -16.73201 -16.14619 -15.91983 -15.28897 -15.23052 -14.93651 -14.75195 -14.41073 -14.31934 -13.97548 -13.39430 -13.34757 -13.16799 -13.09238 -12.77334 -12.66431 -12.47680 -12.30367 -12.09893 -11.76901 -11.76168 -11.51917 -11.21257 -11.06382 -10.96498 -10.63502 -10.50382 -10.35357 -9.98365 -9.58697 -9.49580 -8.79609 -8.40329 -8.24289 -7.45348 -7.11455 -7.02228 -4.86567 1.53184 2.40504 2.50860 2.78766 2.94942 3.06372 3.13226 3.76642 3.83477 3.99664 4.06532 4.46021 4.66981 4.78912 4.95137 5.09556 5.17875 5.26393 5.37993 5.40413 5.49810 5.55418 5.57479 5.63408 5.64207 5.77224 5.79449 5.83050 5.91579 6.12128 6.15887 6.33243 6.51264 6.68856 6.76469 6.90654 6.94455 7.04281 7.15943 7.26816 7.38684 7.41717 7.55206 7.60392 7.95660 8.06548 8.47382 8.88445 8.97210 9.92486 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.004019 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.792560 B = 6966.016910 C = 8023.562126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.027 3.973 4 C 0.063 3.937 5 C 0.038 3.962 6 O -0.138 6.138 7 N -0.592 5.592 8 C 0.606 3.394 9 O -0.538 6.538 10 C 0.000 4.000 11 C -0.151 4.151 12 C -0.125 4.125 13 C -0.073 4.073 14 C -0.160 4.160 15 C -0.125 4.125 16 C -0.109 4.109 17 C 0.069 3.931 18 N -0.281 5.281 19 C -0.379 4.379 20 H 0.123 0.877 21 C 0.087 3.913 22 N -0.823 5.823 23 Si 0.873 3.127 24 H -0.244 1.244 25 H -0.251 1.251 26 H -0.281 1.281 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.424 0.576 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 4.685 1.796 5.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.121 4.121 4 C -0.066 4.066 5 C -0.040 4.040 6 O -0.141 6.141 7 N -0.303 5.303 8 C 0.395 3.605 9 O -0.414 6.414 10 C -0.114 4.114 11 C -0.178 4.178 12 C -0.130 4.130 13 C -0.092 4.092 14 C -0.180 4.180 15 C -0.145 4.145 16 C -0.128 4.128 17 C -0.045 4.045 18 N 0.053 4.947 19 C -0.505 4.505 20 H 0.140 0.860 21 C -0.129 4.129 22 N -0.451 5.451 23 Si 0.697 3.303 24 H -0.168 1.168 25 H -0.174 1.174 26 H -0.207 1.207 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.275 0.725 38 H 0.160 0.840 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.093 5.215 1.420 5.514 hybrid contribution -0.664 -0.475 1.609 1.804 sum 0.429 4.740 3.029 5.641 Atomic orbital electron populations 1.22477 0.87203 1.02762 1.00248 1.61868 1.07970 1.13747 1.42901 1.22381 1.01215 0.88559 0.99959 1.22101 1.01462 0.91445 0.91608 1.22935 0.96273 0.95288 0.89512 1.90536 1.64669 1.09908 1.49031 1.48492 1.41697 1.01754 1.38340 1.17055 0.81043 0.84309 0.78105 1.90754 1.31959 1.58971 1.59737 1.19974 0.92604 0.92467 1.06396 1.20467 1.01222 0.93288 1.02826 1.17999 0.97530 0.95625 1.01871 1.20195 0.98933 0.92254 0.97781 1.20375 0.96990 0.98205 1.02392 1.20609 0.97904 0.97767 0.98255 1.20202 0.99913 0.91774 1.00942 1.18422 0.98719 0.90292 0.97063 1.40285 1.16365 1.09709 1.28352 1.19251 1.14063 1.05265 1.11942 0.86002 1.25514 0.95006 0.98415 0.93958 1.69652 1.17283 1.36297 1.21842 0.86884 0.82790 0.82497 0.78170 1.16792 1.17419 1.20728 0.95785 0.91252 0.90981 0.91131 0.91375 0.95921 0.92380 0.89669 0.91854 0.92010 0.72451 0.84015 0.86914 0.87128 0.86874 0.86278 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.39 60.06 0.56 0.81 16 2 N -0.54 -7.10 4.88 -251.27 -1.23 -8.32 16 3 C 0.03 0.28 9.52 60.06 0.57 0.85 16 4 C 0.06 0.78 5.39 -3.83 -0.02 0.76 16 5 C 0.04 0.58 6.41 37.15 0.24 0.82 16 6 O -0.14 -2.75 11.05 -29.53 -0.33 -3.07 16 7 N -0.59 -12.77 6.17 30.31 0.19 -12.59 16 8 C 0.61 14.28 7.91 -12.76 -0.10 14.18 16 9 O -0.54 -13.67 17.26 -12.83 -0.22 -13.89 16 10 C 0.00 0.00 6.77 -82.25 -0.56 -0.55 16 11 C -0.15 -3.29 10.55 -39.02 -0.41 -3.70 16 12 C -0.13 -2.69 6.16 -106.89 -0.66 -3.35 16 13 C -0.07 -1.32 10.06 -39.51 -0.40 -1.72 16 14 C -0.16 -2.72 9.97 -39.95 -0.40 -3.12 16 15 C -0.12 -2.27 10.02 -39.50 -0.40 -2.66 16 16 C -0.11 -2.30 6.79 -39.41 -0.27 -2.57 16 17 C 0.07 1.58 5.11 -83.83 -0.43 1.15 16 18 N -0.28 -6.71 2.39 -56.08 -0.13 -6.84 16 19 C -0.38 -9.14 8.00 -15.00 -0.12 -9.26 16 20 H 0.12 3.02 6.81 -52.49 -0.36 2.66 16 21 C 0.09 2.06 5.04 -17.47 -0.09 1.97 16 22 N -0.82 -19.76 13.95 55.50 0.77 -18.99 16 23 Si 0.87 19.15 24.10 -169.99 -4.10 15.05 16 24 H -0.24 -5.09 5.66 56.52 0.32 -4.77 16 25 H -0.25 -5.93 7.09 56.52 0.40 -5.53 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 28 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.07 0.89 6.82 -51.93 -0.35 0.54 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 32 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 33 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 34 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 35 H 0.06 0.96 6.81 -51.93 -0.35 0.60 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.42 9.01 4.71 -40.82 -0.19 8.81 16 38 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 2.56 5.91 -52.49 -0.31 2.25 16 43 H 0.29 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -28.93 352.86 -8.02 -36.95 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.83 Total: 12.78 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.47 Total: -6.40 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.40 Total: -46.73 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.55 Total: -16.97 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.10 Total: 15.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.93 -8.02 -36.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328691446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.372 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds