Wall clock time and date at job start Tue Mar 31 2020 11:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00072 * 2 1 4 4 C 1.46902 * 110.99899 * 123.95466 * 2 1 3 5 5 C 1.52995 * 109.47311 * 75.80664 * 4 2 1 6 6 O 1.42898 * 109.46976 * 64.03851 * 5 4 2 7 7 N 1.41606 * 114.00228 * 184.88635 * 6 5 4 8 8 C 1.34767 * 120.00280 * 185.04197 * 7 6 5 9 9 O 1.21666 * 120.00354 * 5.75720 * 8 7 6 10 10 C 1.46894 * 120.00243 * 185.75365 * 8 7 6 11 11 C 1.36117 * 125.44039 * 186.54208 * 10 8 7 12 12 C 1.41699 * 107.75012 * 180.25835 * 11 10 8 13 13 C 1.40023 * 133.35174 * 179.75661 * 12 11 10 14 14 C 1.36577 * 119.82931 * 179.97438 * 13 12 11 15 15 C 1.38853 * 120.60321 * 359.97438 * 14 13 12 16 16 C 1.37850 * 120.63177 * 359.97438 * 15 14 13 17 17 C 1.39089 * 119.81126 * 0.02562 * 16 15 14 18 18 N 1.37840 * 133.16180 * 180.02562 * 17 16 15 19 19 C 1.36890 * 125.61880 * 359.96719 * 18 17 16 20 20 H 1.07996 * 120.00163 * 225.28274 * 19 18 17 21 21 C 1.39018 * 120.00059 * 45.28129 * 19 18 17 22 22 N 1.31343 * 120.00361 * 195.36855 * 21 19 18 23 23 Si 1.86803 * 119.99850 * 15.09622 * 21 19 18 24 24 H 1.48504 * 109.46811 * 264.79140 * 23 21 19 25 25 H 1.48500 * 109.47170 * 24.78807 * 23 21 19 26 26 H 1.48498 * 109.47282 * 144.79287 * 23 21 19 27 27 H 1.09006 * 109.47411 * 296.04517 * 1 2 3 28 28 H 1.08995 * 109.47323 * 56.04788 * 1 2 3 29 29 H 1.09006 * 109.47060 * 176.04851 * 1 2 3 30 30 H 1.09001 * 109.47369 * 188.51436 * 3 2 1 31 31 H 1.08997 * 109.47166 * 308.51846 * 3 2 1 32 32 H 1.09005 * 109.47119 * 68.52102 * 3 2 1 33 33 H 1.08997 * 109.47175 * 315.80668 * 4 2 1 34 34 H 1.09002 * 109.46930 * 195.81030 * 4 2 1 35 35 H 1.09000 * 109.47385 * 304.03710 * 5 4 2 36 36 H 1.09004 * 109.47058 * 184.03375 * 5 4 2 37 37 H 0.97003 * 119.99632 * 5.04614 * 7 6 5 38 38 H 1.08000 * 126.12579 * 359.97438 * 11 10 8 39 39 H 1.08001 * 120.08364 * 359.97223 * 13 12 11 40 40 H 1.08003 * 119.69593 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.68687 * 180.02562 * 15 14 13 42 42 H 1.07991 * 120.09524 * 179.97438 * 16 15 14 43 43 H 0.96993 * 120.00476 * 179.72710 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8480 -2.2627 0.8566 6 8 2.6541 -2.6178 -0.2685 7 7 2.5056 -3.9641 -0.6816 8 6 3.2831 -4.4565 -1.6661 9 8 4.1820 -3.7791 -2.1279 10 6 3.0454 -5.8114 -2.1816 11 6 3.8342 -6.4643 -3.0784 12 6 3.2565 -7.7362 -3.3161 13 6 3.6148 -8.8176 -4.1303 14 6 2.8385 -9.9412 -4.1478 15 6 1.6951 -10.0227 -3.3642 16 6 1.3226 -8.9716 -2.5539 17 6 2.0972 -7.8170 -2.5192 18 7 1.9886 -6.6290 -1.8285 19 6 0.9935 -6.3089 -0.9446 20 1 0.5208 -5.3390 -0.9918 21 6 0.5914 -7.2322 0.0137 22 7 -0.5413 -7.0610 0.6561 23 14 1.6586 -8.7203 0.3826 24 1 1.1839 -9.8797 -0.4149 25 1 3.0685 -8.4188 0.0267 26 1 1.5718 -9.0455 1.8289 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0744 1.3464 -0.1522 31 1 1.5281 1.9399 -0.8040 32 1 1.7743 1.8455 0.9563 33 1 1.4377 -0.5088 2.0381 34 1 3.0487 -0.5253 1.2814 35 1 0.8040 -2.4910 0.6421 36 1 2.1721 -2.8298 1.7292 37 1 1.8442 -4.5318 -0.2560 38 1 4.7360 -6.0799 -3.5316 39 1 4.5026 -8.7633 -4.7428 40 1 3.1170 -10.7742 -4.7763 41 1 1.0923 -10.9185 -3.3892 42 1 0.4313 -9.0442 -1.9483 43 1 -0.8238 -7.7073 1.3219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328691446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:03 Heat of formation + Delta-G solvation = 31.421380 kcal Electronic energy + Delta-G solvation = -26643.959070 eV Core-core repulsion = 22884.861540 eV Total energy + Delta-G solvation = -3759.097530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52707 -40.24577 -39.04604 -37.80719 -37.51798 -35.51367 -33.60923 -33.09933 -31.01516 -30.53700 -29.55522 -28.52632 -26.80386 -25.24065 -24.78723 -22.86256 -22.28313 -22.06642 -20.99242 -20.29630 -19.00376 -18.39606 -17.64548 -17.30455 -16.77063 -16.47854 -16.38031 -16.12502 -15.90314 -15.72125 -15.48666 -15.03421 -14.89754 -14.74678 -14.66354 -14.28730 -14.03747 -13.68152 -13.59154 -13.32687 -13.19474 -12.82322 -12.75339 -12.65071 -12.49740 -12.29164 -12.24700 -11.98503 -11.88894 -11.56741 -11.33551 -11.30859 -10.45224 -9.93688 -9.31315 -9.06995 -8.91010 -8.66344 -6.69112 -0.08112 0.88462 0.92787 1.09398 1.20690 1.30930 1.36504 2.00637 2.26679 2.31792 2.68099 2.91459 3.13073 3.48382 3.76467 3.90471 4.00658 4.02367 4.19107 4.28838 4.33228 4.36491 4.40134 4.48283 4.56068 4.60014 4.65082 4.69542 4.72974 4.77332 4.97522 4.98966 4.99100 5.10476 5.25056 5.30643 5.61610 5.68589 5.73337 5.80708 5.92916 5.99793 6.00374 6.06720 6.30842 6.35427 6.70574 7.14081 7.21475 8.15422 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.004019 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.792560 B = 6966.016910 C = 8023.562126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.573 5.573 3 C 0.029 3.971 4 C 0.070 3.930 5 C 0.030 3.970 6 O -0.155 6.155 7 N -0.589 5.589 8 C 0.602 3.398 9 O -0.567 6.567 10 C -0.030 4.030 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.071 4.071 14 C -0.151 4.151 15 C -0.105 4.105 16 C -0.146 4.146 17 C 0.050 3.950 18 N -0.299 5.299 19 C -0.386 4.386 20 H 0.102 0.898 21 C 0.067 3.933 22 N -0.848 5.848 23 Si 0.914 3.086 24 H -0.224 1.224 25 H -0.279 1.279 26 H -0.274 1.274 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.423 0.577 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.108 0.892 43 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 2.991 1.105 3.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.298 5.298 3 C -0.119 4.119 4 C -0.060 4.060 5 C -0.047 4.047 6 O -0.159 6.159 7 N -0.297 5.297 8 C 0.391 3.609 9 O -0.446 6.446 10 C -0.143 4.143 11 C -0.174 4.174 12 C -0.149 4.149 13 C -0.089 4.089 14 C -0.170 4.170 15 C -0.125 4.125 16 C -0.166 4.166 17 C -0.063 4.063 18 N 0.034 4.966 19 C -0.512 4.512 20 H 0.120 0.880 21 C -0.146 4.146 22 N -0.478 5.478 23 Si 0.737 3.263 24 H -0.148 1.148 25 H -0.204 1.204 26 H -0.200 1.200 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.275 0.725 38 H 0.175 0.825 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.166 0.834 42 H 0.126 0.874 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.525 3.521 0.747 3.909 hybrid contribution -0.798 0.009 1.710 1.887 sum 0.727 3.530 2.457 4.362 Atomic orbital electron populations 1.22448 0.86544 1.01936 1.01543 1.61819 1.08917 1.15397 1.43685 1.22386 1.00847 0.87363 1.01280 1.22117 1.02227 0.89074 0.92550 1.23300 0.95425 0.97662 0.88348 1.90522 1.65889 1.08513 1.50970 1.48380 1.40838 1.02763 1.37692 1.17211 0.80884 0.84526 0.78249 1.90706 1.33187 1.59832 1.60913 1.20149 0.93749 0.92742 1.07647 1.20779 1.01230 0.93540 1.01843 1.18373 0.97257 0.96465 1.02780 1.20663 1.00113 0.91297 0.96839 1.20911 0.95577 0.98895 1.01635 1.21153 0.98009 0.97562 0.95804 1.20346 1.00299 0.92661 1.03297 1.18892 0.99704 0.90325 0.97400 1.40279 1.16591 1.10472 1.29249 1.19099 1.14434 1.04900 1.12791 0.88029 1.25852 0.95462 0.99711 0.93603 1.69668 1.18080 1.37367 1.22691 0.86309 0.80029 0.81561 0.78443 1.14759 1.20389 1.19957 0.93794 0.90699 0.92768 0.91618 0.90724 0.94002 0.89386 0.89314 0.92315 0.90855 0.72487 0.82472 0.83509 0.82462 0.83361 0.87385 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.39 127.69 1.20 1.72 16 2 N -0.57 -14.79 4.88 -948.87 -4.63 -19.42 16 3 C 0.03 0.57 9.52 127.69 1.22 1.78 16 4 C 0.07 1.67 5.39 86.30 0.46 2.13 16 5 C 0.03 0.94 6.41 71.98 0.46 1.40 16 6 O -0.15 -6.41 11.05 -21.54 -0.24 -6.65 16 7 N -0.59 -26.72 6.17 -176.26 -1.09 -27.81 16 8 C 0.60 29.66 7.91 86.51 0.68 30.35 16 9 O -0.57 -29.92 17.26 13.02 0.22 -29.70 16 10 C -0.03 -1.43 6.77 39.91 0.27 -1.16 16 11 C -0.15 -6.41 10.55 22.63 0.24 -6.17 16 12 C -0.14 -6.02 6.16 -21.34 -0.13 -6.15 16 13 C -0.07 -2.30 10.06 22.31 0.22 -2.07 16 14 C -0.15 -4.34 9.97 22.03 0.22 -4.13 16 15 C -0.11 -3.40 10.02 22.33 0.22 -3.18 16 16 C -0.15 -5.99 6.79 22.38 0.15 -5.84 16 17 C 0.05 2.28 5.11 39.06 0.20 2.48 16 18 N -0.30 -14.69 2.39 -331.34 -0.79 -15.48 16 19 C -0.39 -19.44 8.00 84.09 0.67 -18.77 16 20 H 0.10 5.38 6.81 -2.91 -0.02 5.36 16 21 C 0.07 3.27 5.04 84.95 0.43 3.69 16 22 N -0.85 -41.65 13.95 21.67 0.30 -41.35 16 23 Si 0.91 39.69 24.10 68.60 1.65 41.34 16 24 H -0.22 -8.95 5.66 99.48 0.56 -8.38 16 25 H -0.28 -13.34 7.09 99.48 0.71 -12.63 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H 0.04 0.80 8.09 -2.38 -0.02 0.78 16 28 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 29 H 0.05 1.38 6.82 -2.38 -0.02 1.37 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 32 H 0.04 0.66 8.13 -2.38 -0.02 0.64 16 33 H 0.09 1.60 7.96 -2.39 -0.02 1.58 16 34 H 0.09 2.06 7.94 -2.39 -0.02 2.04 16 35 H 0.06 1.86 6.81 -2.39 -0.02 1.84 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.42 19.16 4.71 -92.71 -0.44 18.72 16 38 H 0.16 6.18 8.06 -2.91 -0.02 6.16 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 42 H 0.11 4.59 5.91 -2.92 -0.02 4.58 16 43 H 0.30 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -64.66 352.86 2.41 -62.26 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: 0.45 Total: 40.72 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 6.52 Total: -3.91 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.21 Total: -104.06 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.01 Total: -36.35 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.65 Total: 41.34 kcal Total: -64.66 2.41 -62.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328691446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.677 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds