Wall clock time and date at job start Tue Mar 31 2020 11:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39527 * 123.87750 * 2 1 4 4 C 1.39370 * 130.82726 * 0.02562 * 3 2 1 5 5 C 1.37939 * 120.13298 * 180.22879 * 4 3 2 6 6 C 1.38306 * 120.37123 * 359.52278 * 5 4 3 7 7 C 1.50702 * 120.08304 * 180.24097 * 6 5 4 8 8 N 1.46498 * 109.46707 * 270.21132 * 7 6 5 9 9 C 1.34782 * 119.99774 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00021 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99732 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47049 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47254 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00201 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99542 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47380 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47073 * 119.99870 * 18 16 14 21 21 H 1.48506 * 109.47271 * 239.99629 * 18 16 14 22 22 C 1.38394 * 119.82634 * 0.44827 * 6 5 4 23 23 C 1.37677 * 119.91531 * 359.79498 * 22 6 5 24 24 C 1.51141 * 132.85016 * 180.02562 * 23 22 6 25 25 C 1.34366 * 123.87199 * 179.97438 * 2 1 3 26 26 O 1.21291 * 126.44588 * 359.97438 * 25 2 1 27 27 H 1.08995 * 109.46970 * 89.99239 * 1 2 3 28 28 H 1.08990 * 109.47315 * 209.99698 * 1 2 3 29 29 H 1.08999 * 109.46719 * 329.99710 * 1 2 3 30 30 H 1.08002 * 119.92983 * 359.94215 * 4 3 2 31 31 H 1.07994 * 119.81416 * 179.72245 * 5 4 3 32 32 H 1.09001 * 109.47190 * 30.21234 * 7 6 5 33 33 H 1.09000 * 109.46756 * 150.21496 * 7 6 5 34 34 H 0.97003 * 120.00573 * 0.02562 * 8 7 6 35 35 H 0.96995 * 120.00145 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.47122 * 299.99583 * 12 11 9 37 37 H 1.08996 * 109.47073 * 59.99972 * 12 11 9 38 38 H 1.08992 * 109.46824 * 299.99797 * 13 12 11 39 39 H 1.09005 * 109.47259 * 59.99905 * 13 12 11 40 40 H 0.97006 * 119.99633 * 180.02562 * 17 16 14 41 41 H 1.08008 * 120.03928 * 179.80426 * 22 6 5 42 42 H 1.08998 * 110.51123 * 61.34237 * 24 23 22 43 43 H 1.09004 * 110.50682 * 298.63699 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1584 0.0000 4 6 1.8751 2.5027 0.0005 5 6 2.8432 3.4854 -0.0044 6 6 4.1840 3.1461 0.0001 7 6 5.2362 4.2250 0.0003 8 7 5.5772 4.5745 -1.3809 9 6 6.5028 5.5228 -1.6272 10 8 7.0544 6.0885 -0.7029 11 7 6.8169 5.8440 -2.8979 12 6 7.8226 6.8752 -3.1655 13 6 7.9887 7.0454 -4.6769 14 6 9.0237 8.1057 -4.9522 15 1 9.5136 8.6082 -4.1313 16 6 9.3444 8.4350 -6.2521 17 7 8.7474 7.8234 -7.2517 18 14 10.6267 9.7497 -6.5933 19 1 11.1458 10.2805 -5.3073 20 1 11.7451 9.1600 -7.3724 21 1 10.0091 10.8534 -7.3718 22 6 4.5568 1.8133 0.0002 23 6 3.5925 0.8306 0.0001 24 6 3.6635 -0.6791 0.0007 25 6 2.2139 -1.1156 0.0005 26 8 1.8054 -2.2577 0.0014 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 0.8302 2.7756 0.0000 31 1 2.5525 4.5255 -0.0086 32 1 4.8527 5.1065 0.5141 33 1 6.1269 3.8637 0.5141 34 1 5.1369 4.1235 -2.1183 35 1 6.3766 5.3930 -3.6351 36 1 7.5001 7.8197 -2.7272 37 1 8.7745 6.5770 -2.7262 38 1 8.3110 6.1011 -5.1156 39 1 7.0366 7.3438 -5.1158 40 1 8.9733 8.0548 -8.1663 41 1 5.6029 1.5445 0.0006 42 1 4.1701 -1.0373 0.8969 43 1 4.1707 -1.0379 -0.8950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343408396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:02 Heat of formation + Delta-G solvation = -35.036378 kcal Electronic energy + Delta-G solvation = -24606.907964 eV Core-core repulsion = 20844.928609 eV Total energy + Delta-G solvation = -3761.979355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.97789 -39.71682 -38.90514 -36.76798 -35.00799 -34.29453 -33.46571 -32.81602 -31.10281 -29.58221 -28.75501 -27.27068 -25.85945 -24.37054 -22.55766 -21.65809 -21.01931 -20.72558 -20.54383 -18.17341 -17.66371 -17.20346 -16.82529 -16.40995 -16.12207 -15.57226 -15.22717 -14.90119 -14.68053 -14.50677 -14.22867 -14.16930 -13.91237 -13.54341 -13.50875 -13.46088 -13.41413 -12.92487 -12.56642 -12.45522 -12.28186 -12.02119 -11.38449 -11.17219 -11.04351 -10.83734 -10.61222 -10.58904 -10.31862 -9.95332 -9.56217 -9.34052 -9.24441 -9.03396 -8.48409 -8.36952 -8.23998 -6.08991 -4.11384 0.61115 0.86578 1.95355 2.22364 2.98299 3.28807 3.36340 3.40810 3.45412 3.59053 3.62913 3.88004 4.28506 4.40702 4.42675 4.52476 4.64530 4.74215 4.79056 4.84891 4.91073 4.94923 5.09234 5.22846 5.28308 5.28563 5.44003 5.61782 5.64444 5.79087 6.06135 6.18812 6.24109 6.30434 6.40857 6.55795 6.58959 6.78709 7.00889 7.24361 7.39196 7.57840 7.64097 7.90568 8.26572 8.44021 8.93644 9.00332 9.53400 11.02712 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.001854 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.133217 B =15096.260512 C =15443.035231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.554 5.554 3 C 0.146 3.854 4 C -0.138 4.138 5 C -0.063 4.063 6 C -0.122 4.122 7 C 0.186 3.814 8 N -0.751 5.751 9 C 0.698 3.302 10 O -0.599 6.599 11 N -0.738 5.738 12 C 0.140 3.860 13 C 0.012 3.988 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.044 4.044 23 C -0.145 4.145 24 C -0.113 4.113 25 C 0.525 3.475 26 O -0.504 6.504 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.395 0.605 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.295 -16.180 15.444 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.277 5.277 3 C 0.050 3.950 4 C -0.159 4.159 5 C -0.082 4.082 6 C -0.124 4.124 7 C 0.062 3.938 8 N -0.408 5.408 9 C 0.398 3.602 10 O -0.477 6.477 11 N -0.392 5.392 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.063 4.063 23 C -0.148 4.148 24 C -0.152 4.152 25 C 0.315 3.685 26 O -0.378 6.378 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.228 0.772 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.118 -16.351 16.115 28.637 hybrid contribution 0.008 0.292 -1.070 1.109 sum -17.109 -16.059 15.046 27.875 Atomic orbital electron populations 1.21846 0.77378 1.04133 1.03105 1.45776 1.07418 1.05612 1.68849 1.18222 0.90263 0.87534 0.98939 1.20346 1.00335 0.89010 1.06210 1.20884 0.91606 0.99375 0.96303 1.19839 0.94389 0.93850 1.04319 1.19873 0.95577 0.95143 0.83257 1.45194 1.44721 1.42880 1.08018 1.16068 0.79952 0.80052 0.84120 1.90895 1.56689 1.56578 1.43582 1.45539 1.45125 1.43453 1.05069 1.21591 0.88739 0.88117 0.99827 1.19333 0.97710 0.97723 0.87765 1.21097 1.21984 1.20518 0.92227 0.92144 1.25004 0.96539 0.96617 0.96237 1.69969 1.42445 1.42053 0.98887 0.86455 0.81256 0.81442 0.78395 1.19558 1.20971 1.20970 1.20236 0.99030 0.90660 0.96394 1.19750 0.92630 0.94806 1.07599 1.21064 0.95156 0.92515 1.06500 1.20699 0.89038 0.83911 0.74851 1.90796 1.79010 1.18909 1.49121 0.91387 0.89790 0.90144 0.85494 0.84705 0.90780 0.90821 0.77152 0.77387 0.92783 0.92765 0.95972 0.95977 0.92936 0.84840 0.85785 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 10.77 59.85 0.64 1.05 16 2 N -0.55 -4.28 3.13 -120.63 -0.38 -4.66 16 3 C 0.15 1.09 6.69 -83.69 -0.56 0.53 16 4 C -0.14 -0.89 9.74 -39.27 -0.38 -1.27 16 5 C -0.06 -0.42 9.68 -39.67 -0.38 -0.80 16 6 C -0.12 -0.93 5.26 -104.54 -0.55 -1.47 16 7 C 0.19 1.82 5.80 -5.19 -0.03 1.79 16 8 N -0.75 -8.75 5.55 -66.41 -0.37 -9.12 16 9 C 0.70 11.71 8.57 -86.91 -0.74 10.96 16 10 O -0.60 -12.48 16.34 5.28 0.09 -12.40 16 11 N -0.74 -12.72 5.56 -65.22 -0.36 -13.08 16 12 C 0.14 2.97 5.61 -4.04 -0.02 2.95 16 13 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.04 -0.31 9.70 -39.73 -0.39 -0.70 16 23 C -0.15 -1.04 6.35 -104.37 -0.66 -1.70 16 24 C -0.11 -0.72 6.88 -28.48 -0.20 -0.92 16 25 C 0.53 4.79 8.23 -10.83 -0.09 4.70 16 26 O -0.50 -6.22 17.67 5.55 0.10 -6.12 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.46 7.95 -51.93 -0.41 0.05 16 29 H 0.08 0.27 7.61 -51.93 -0.40 -0.13 16 30 H 0.13 0.58 7.70 -52.49 -0.40 0.17 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.39 3.71 8.48 -40.82 -0.35 3.36 16 35 H 0.39 5.80 8.49 -40.82 -0.35 5.45 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -35.00 370.89 -9.63 -44.62 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.09 Total: 2.03 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.91 Total: 2.13 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.37 Total: -52.14 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.00 -9.63 -44.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.584 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds