Wall clock time and date at job start Tue Mar 31 2020 11:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39527 * 123.87750 * 2 1 4 4 C 1.39370 * 130.82726 * 0.02562 * 3 2 1 5 5 C 1.37939 * 120.13298 * 180.22879 * 4 3 2 6 6 C 1.38306 * 120.37123 * 359.52278 * 5 4 3 7 7 C 1.50702 * 120.08304 * 180.24097 * 6 5 4 8 8 N 1.46498 * 109.46707 * 270.21132 * 7 6 5 9 9 C 1.34782 * 119.99774 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00021 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99732 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47049 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47254 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00201 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99542 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47380 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47073 * 119.99870 * 18 16 14 21 21 H 1.48506 * 109.47271 * 239.99629 * 18 16 14 22 22 C 1.38394 * 119.82634 * 0.44827 * 6 5 4 23 23 C 1.37677 * 119.91531 * 359.79498 * 22 6 5 24 24 C 1.51141 * 132.85016 * 180.02562 * 23 22 6 25 25 C 1.34366 * 123.87199 * 179.97438 * 2 1 3 26 26 O 1.21291 * 126.44588 * 359.97438 * 25 2 1 27 27 H 1.08995 * 109.46970 * 89.99239 * 1 2 3 28 28 H 1.08990 * 109.47315 * 209.99698 * 1 2 3 29 29 H 1.08999 * 109.46719 * 329.99710 * 1 2 3 30 30 H 1.08002 * 119.92983 * 359.94215 * 4 3 2 31 31 H 1.07994 * 119.81416 * 179.72245 * 5 4 3 32 32 H 1.09001 * 109.47190 * 30.21234 * 7 6 5 33 33 H 1.09000 * 109.46756 * 150.21496 * 7 6 5 34 34 H 0.97003 * 120.00573 * 0.02562 * 8 7 6 35 35 H 0.96995 * 120.00145 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.47122 * 299.99583 * 12 11 9 37 37 H 1.08996 * 109.47073 * 59.99972 * 12 11 9 38 38 H 1.08992 * 109.46824 * 299.99797 * 13 12 11 39 39 H 1.09005 * 109.47259 * 59.99905 * 13 12 11 40 40 H 0.97006 * 119.99633 * 180.02562 * 17 16 14 41 41 H 1.08008 * 120.03928 * 179.80426 * 22 6 5 42 42 H 1.08998 * 110.51123 * 61.34237 * 24 23 22 43 43 H 1.09004 * 110.50682 * 298.63699 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1584 0.0000 4 6 1.8751 2.5027 0.0005 5 6 2.8432 3.4854 -0.0044 6 6 4.1840 3.1461 0.0001 7 6 5.2362 4.2250 0.0003 8 7 5.5772 4.5745 -1.3809 9 6 6.5028 5.5228 -1.6272 10 8 7.0544 6.0885 -0.7029 11 7 6.8169 5.8440 -2.8979 12 6 7.8226 6.8752 -3.1655 13 6 7.9887 7.0454 -4.6769 14 6 9.0237 8.1057 -4.9522 15 1 9.5136 8.6082 -4.1313 16 6 9.3444 8.4350 -6.2521 17 7 8.7474 7.8234 -7.2517 18 14 10.6267 9.7497 -6.5933 19 1 11.1458 10.2805 -5.3073 20 1 11.7451 9.1600 -7.3724 21 1 10.0091 10.8534 -7.3718 22 6 4.5568 1.8133 0.0002 23 6 3.5925 0.8306 0.0001 24 6 3.6635 -0.6791 0.0007 25 6 2.2139 -1.1156 0.0005 26 8 1.8054 -2.2577 0.0014 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 0.8302 2.7756 0.0000 31 1 2.5525 4.5255 -0.0086 32 1 4.8527 5.1065 0.5141 33 1 6.1269 3.8637 0.5141 34 1 5.1369 4.1235 -2.1183 35 1 6.3766 5.3930 -3.6351 36 1 7.5001 7.8197 -2.7272 37 1 8.7745 6.5770 -2.7262 38 1 8.3110 6.1011 -5.1156 39 1 7.0366 7.3438 -5.1158 40 1 8.9733 8.0548 -8.1663 41 1 5.6029 1.5445 0.0006 42 1 4.1701 -1.0373 0.8969 43 1 4.1707 -1.0379 -0.8950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343408396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:01 Heat of formation + Delta-G solvation = -58.709392 kcal Electronic energy + Delta-G solvation = -24607.934502 eV Core-core repulsion = 20844.928609 eV Total energy + Delta-G solvation = -3763.005894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.56030 -40.95259 -39.67082 -37.54325 -36.56106 -35.39589 -34.76200 -34.00947 -32.06371 -31.03494 -29.49408 -27.82678 -27.00015 -25.90346 -23.15154 -22.90888 -22.21020 -21.89119 -21.30694 -19.46939 -18.39547 -18.18406 -17.89341 -17.43074 -17.27416 -16.70776 -16.47458 -16.20381 -15.69226 -15.32847 -15.26049 -15.06747 -14.94133 -14.64031 -14.51623 -14.26959 -14.11126 -14.02697 -13.56874 -13.33187 -13.17207 -13.06806 -12.91773 -12.69108 -12.48543 -12.20260 -11.90418 -11.65678 -11.52247 -11.38658 -11.28350 -11.11716 -10.58672 -10.28714 -9.84627 -9.64835 -8.96697 -8.21926 -6.31640 0.01060 0.35437 1.29327 1.42830 1.44052 1.57073 1.69084 1.91041 2.24007 2.43402 2.75590 3.05168 3.13093 3.35146 3.53988 3.73111 3.86004 4.02840 4.15742 4.33188 4.40692 4.41525 4.47112 4.52177 4.57198 4.62542 4.72009 4.74856 4.84636 4.91779 4.93633 5.08529 5.24046 5.36117 5.51021 5.53771 5.56723 5.61596 5.63710 5.68427 5.82677 6.02212 6.11567 6.20576 6.75799 6.82190 7.19240 7.37716 7.66680 8.90110 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.001854 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.133217 B =15096.260512 C =15443.035231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.555 5.555 3 C 0.134 3.866 4 C -0.133 4.133 5 C -0.062 4.062 6 C -0.124 4.124 7 C 0.187 3.813 8 N -0.729 5.729 9 C 0.698 3.302 10 O -0.640 6.640 11 N -0.734 5.734 12 C 0.161 3.839 13 C 0.023 3.977 14 C -0.544 4.544 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.277 1.277 22 C -0.044 4.044 23 C -0.148 4.148 24 C -0.109 4.109 25 C 0.516 3.484 26 O -0.546 6.546 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.406 0.594 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.690 -15.878 15.773 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.276 5.276 3 C 0.038 3.962 4 C -0.154 4.154 5 C -0.081 4.081 6 C -0.126 4.126 7 C 0.064 3.936 8 N -0.386 5.386 9 C 0.398 3.602 10 O -0.522 6.522 11 N -0.389 5.389 12 C 0.036 3.964 13 C -0.015 4.015 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.063 4.063 23 C -0.151 4.151 24 C -0.147 4.147 25 C 0.307 3.693 26 O -0.424 6.424 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.245 0.755 35 H 0.242 0.758 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.565 -16.068 16.443 28.932 hybrid contribution 0.049 0.168 -1.142 1.155 sum -17.516 -15.900 15.301 28.174 Atomic orbital electron populations 1.22034 0.76255 1.04987 1.03825 1.45900 1.08346 1.05426 1.67944 1.18433 0.90441 0.87854 0.99427 1.20549 1.01389 0.88332 1.05121 1.21033 0.91218 1.00145 0.95730 1.19622 0.94121 0.93299 1.05510 1.19936 0.96147 0.95790 0.81770 1.45053 1.42878 1.41033 1.09588 1.16159 0.80393 0.80533 0.83100 1.90869 1.58411 1.58299 1.44635 1.45223 1.44658 1.42943 1.06088 1.21054 0.89343 0.88816 0.97165 1.19136 0.96272 0.96268 0.89782 1.21511 1.22801 1.21367 0.92568 0.92253 1.25869 0.98590 0.98799 0.96042 1.70066 1.43796 1.43439 0.99351 0.85398 0.78609 0.78656 0.78383 1.18923 1.20329 1.20294 1.20305 0.99583 0.90369 0.96048 1.19833 0.92657 0.95115 1.07461 1.21100 0.93671 0.92092 1.07857 1.21126 0.90302 0.83617 0.74214 1.90766 1.79882 1.20445 1.51333 0.90743 0.90389 0.87897 0.83447 0.83507 0.91051 0.91232 0.75474 0.75836 0.93821 0.93838 0.97317 0.97287 0.92610 0.83874 0.84178 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.77 127.77 1.38 2.03 16 2 N -0.55 -7.87 3.13 -654.16 -2.05 -9.92 16 3 C 0.13 1.73 6.69 38.35 0.26 1.99 16 4 C -0.13 -1.35 9.74 22.47 0.22 -1.14 16 5 C -0.06 -0.68 9.68 22.22 0.21 -0.46 16 6 C -0.12 -1.60 5.26 -19.81 -0.10 -1.71 16 7 C 0.19 3.35 5.80 85.63 0.50 3.85 16 8 N -0.73 -15.74 5.55 -482.28 -2.68 -18.42 16 9 C 0.70 22.77 8.57 179.05 1.53 24.31 16 10 O -0.64 -26.49 16.34 -4.01 -0.07 -26.55 16 11 N -0.73 -24.84 5.56 -478.52 -2.66 -27.50 16 12 C 0.16 6.85 5.61 86.38 0.48 7.34 16 13 C 0.02 1.14 5.09 29.85 0.15 1.30 16 14 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 16 C 0.01 0.31 5.46 84.66 0.46 0.77 16 17 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 18 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 C -0.04 -0.53 9.70 22.17 0.22 -0.31 16 23 C -0.15 -1.83 6.35 -19.70 -0.13 -1.96 16 24 C -0.11 -1.23 6.88 29.46 0.20 -1.03 16 25 C 0.52 9.13 8.23 87.94 0.72 9.85 16 26 O -0.55 -13.68 17.67 -3.06 -0.05 -13.74 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.83 7.95 -2.39 -0.02 0.81 16 29 H 0.10 0.46 7.61 -2.39 -0.02 0.45 16 30 H 0.15 0.86 7.70 -2.91 -0.02 0.83 16 31 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.07 1.36 8.09 -2.39 -0.02 1.35 16 33 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 34 H 0.41 6.74 8.48 -92.71 -0.79 5.96 16 35 H 0.41 11.57 8.49 -92.71 -0.79 10.79 16 36 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 41 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -75.22 370.89 0.62 -74.60 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.53 Total: 14.89 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 6.34 Total: 14.89 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -7.10 Total: -109.49 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.12 Total: -40.29 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.22 0.62 -74.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.894 kcal (2) G-P(sol) polarization free energy of solvation -75.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds