Wall clock time and date at job start Tue Mar 31 2020 11:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 120.00362 * 2 1 4 4 C 1.50702 * 109.47206 * 270.00088 * 3 2 1 5 5 C 1.38666 * 120.41818 * 269.72136 * 4 3 2 6 6 C 1.38630 * 118.41943 * 179.78175 * 5 4 3 7 7 C 1.38220 * 119.15906 * 0.51366 * 6 5 4 8 8 N 1.31851 * 120.76868 * 359.72664 * 7 6 5 9 9 C 1.31894 * 121.72068 * 359.97438 * 8 7 6 10 10 C 1.34781 * 119.99486 * 180.02562 * 2 1 3 11 11 O 1.21354 * 119.99733 * 174.40351 * 10 2 1 12 12 C 1.49448 * 120.00007 * 354.39505 * 10 2 1 13 13 O 1.21347 * 120.00554 * 357.61285 * 12 10 2 14 14 N 1.34779 * 119.99735 * 177.60732 * 12 10 2 15 15 C 1.46500 * 119.99792 * 175.30590 * 14 12 10 16 16 C 1.53003 * 109.46978 * 184.59936 * 15 14 12 17 17 C 1.50699 * 115.54754 * 303.66146 * 16 15 14 18 18 H 1.08002 * 120.00280 * 143.92258 * 17 16 15 19 19 C 1.37877 * 120.00420 * 323.92202 * 17 16 15 20 20 N 1.31518 * 119.99758 * 3.14304 * 19 17 16 21 21 Si 1.86796 * 120.00582 * 183.14697 * 19 17 16 22 22 H 1.48501 * 109.47335 * 89.99679 * 21 19 17 23 23 H 1.48500 * 109.47231 * 210.00006 * 21 19 17 24 24 H 1.48508 * 109.46866 * 329.99782 * 21 19 17 25 25 C 1.52992 * 117.50005 * 157.99525 * 16 15 14 26 26 C 1.52996 * 117.50384 * 89.33030 * 16 15 14 27 27 H 1.09007 * 109.47049 * 263.76878 * 1 2 3 28 28 H 1.09004 * 109.46731 * 23.75913 * 1 2 3 29 29 H 1.08993 * 109.47581 * 143.76407 * 1 2 3 30 30 H 1.09004 * 109.47304 * 30.00139 * 3 2 1 31 31 H 1.09008 * 109.47202 * 149.99856 * 3 2 1 32 32 H 1.08009 * 120.79237 * 0.02562 * 5 4 3 33 33 H 1.08001 * 120.41385 * 180.21631 * 6 5 4 34 34 H 1.08004 * 119.61428 * 179.75052 * 7 6 5 35 35 H 1.07998 * 119.61164 * 180.02562 * 9 8 7 36 36 H 0.97004 * 119.99902 * 355.03494 * 14 12 10 37 37 H 1.09002 * 109.47200 * 304.59141 * 15 14 12 38 38 H 1.08997 * 109.47098 * 64.59715 * 15 14 12 39 39 H 0.96994 * 120.00188 * 185.00413 * 20 19 17 40 40 H 1.09002 * 117.50113 * 359.97438 * 25 16 15 41 41 H 1.09008 * 117.50369 * 145.01717 * 25 16 15 42 42 H 1.08990 * 117.50312 * 214.98045 * 26 16 15 43 43 H 1.09000 * 117.49620 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6041 1.3131 -2.0808 6 6 3.7909 1.7333 -3.3887 7 6 2.8312 2.5307 -3.9834 8 7 1.7468 2.8870 -3.3235 9 6 1.5332 2.5011 -2.0805 10 6 2.1389 -1.1673 -0.0005 11 8 3.3481 -1.1698 -0.1030 12 6 1.3969 -2.4584 0.1253 13 8 0.1922 -2.4543 0.2715 14 7 2.0657 -3.6275 0.0763 15 6 1.3545 -4.8883 0.3022 16 6 2.3559 -6.0451 0.3058 17 6 3.2062 -6.1725 -0.9319 18 1 4.2345 -6.4922 -0.8501 19 6 2.6713 -5.8811 -2.1688 20 7 1.4385 -5.4327 -2.2630 21 14 3.6975 -6.1230 -3.7108 22 1 3.4995 -7.5017 -4.2259 23 1 3.2766 -5.1432 -4.7443 24 1 5.1322 -5.9165 -3.3880 25 6 1.9411 -7.3363 1.0139 26 6 2.9950 -6.4222 1.6437 27 1 -0.3633 -0.1116 1.0217 28 1 -0.3633 0.9406 -0.4141 29 1 -0.3634 -0.8288 -0.6074 30 1 1.6086 2.0283 0.5139 31 1 3.1501 1.1382 0.5139 32 1 4.3391 0.6931 -1.5890 33 1 4.6773 1.4451 -3.9342 34 1 2.9712 2.8656 -5.0006 35 1 0.6327 2.8126 -1.5722 36 1 3.0172 -3.6344 -0.1124 37 1 0.8415 -4.8489 1.2632 38 1 0.6251 -5.0415 -0.4931 39 1 1.0373 -5.2966 -3.1356 40 1 0.9549 -7.3616 1.4776 41 1 2.2835 -8.2781 0.5848 42 1 4.0302 -6.7628 1.6288 43 1 2.7024 -5.8458 2.5214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347564021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:33 Heat of formation + Delta-G solvation = 6.239583 kcal Electronic energy + Delta-G solvation = -26642.785165 eV Core-core repulsion = 22882.595670 eV Total energy + Delta-G solvation = -3760.189495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62819 -39.86068 -38.03086 -36.74109 -35.88808 -33.21109 -32.68181 -32.23233 -31.72626 -27.72902 -27.03831 -25.99005 -25.43278 -23.61771 -23.11267 -21.58515 -21.22658 -19.48709 -19.09214 -17.48670 -17.22002 -16.69707 -16.38348 -16.11441 -15.99249 -15.18759 -14.98412 -14.77767 -14.48786 -13.98447 -13.92650 -13.60507 -13.34382 -13.10686 -12.94803 -12.76715 -12.65483 -12.36472 -12.23193 -11.85374 -11.67765 -11.45296 -11.11877 -10.87982 -10.78628 -10.55866 -10.31126 -9.92326 -9.72517 -9.63456 -9.27279 -9.08100 -8.93679 -8.73621 -8.73041 -8.35668 -8.02453 -6.07128 -4.25547 0.92046 1.20179 1.96453 2.78336 3.20746 3.29472 3.31353 3.73241 3.80115 4.06973 4.27057 4.30175 4.63273 4.64410 4.85173 4.89161 4.93919 5.16287 5.23523 5.25903 5.41842 5.44642 5.48151 5.64589 5.77480 5.94746 6.07093 6.08560 6.17405 6.23420 6.42663 6.46775 6.54567 6.57560 6.61974 6.81644 6.99286 7.14255 7.20530 7.37308 7.51484 7.83193 7.89665 7.92989 8.24099 8.38853 8.75483 8.84470 9.38836 10.83270 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.004107 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.232865 B = 6815.685246 C = 8036.215653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.592 5.592 3 C 0.159 3.841 4 C -0.159 4.159 5 C -0.049 4.049 6 C -0.175 4.175 7 C 0.098 3.902 8 N -0.489 5.489 9 C 0.110 3.890 10 C 0.509 3.491 11 O -0.522 6.522 12 C 0.493 3.507 13 O -0.541 6.541 14 N -0.644 5.644 15 C 0.158 3.842 16 C 0.033 3.967 17 C -0.494 4.494 18 H 0.063 0.937 19 C 0.074 3.926 20 N -0.873 5.873 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.195 4.195 26 C -0.211 4.211 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.411 0.589 37 H 0.028 0.972 38 H 0.124 0.876 39 H 0.263 0.737 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 14.378 2.254 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.326 5.326 3 C 0.036 3.964 4 C -0.162 4.162 5 C -0.075 4.075 6 C -0.194 4.194 7 C -0.059 4.059 8 N -0.198 5.198 9 C -0.048 4.048 10 C 0.293 3.707 11 O -0.398 6.398 12 C 0.272 3.728 13 O -0.422 6.422 14 N -0.291 5.291 15 C 0.035 3.965 16 C 0.033 3.967 17 C -0.532 4.532 18 H 0.081 0.919 19 C -0.130 4.130 20 N -0.510 5.510 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.234 4.234 26 C -0.248 4.248 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.247 0.753 37 H 0.046 0.954 38 H 0.142 0.858 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.323 14.984 1.769 15.091 hybrid contribution 1.555 -0.830 -0.579 1.855 sum 1.231 14.153 1.190 14.257 Atomic orbital electron populations 1.22175 0.77456 1.03129 1.03381 1.47734 1.08166 1.04512 1.72234 1.20336 0.98872 0.85177 0.92049 1.21251 0.96240 1.00043 0.98697 1.21734 0.96611 0.95050 0.94131 1.22206 1.01345 0.99806 0.96087 1.22769 0.89363 0.94138 0.99660 1.67690 1.21144 1.22356 1.08581 1.22642 0.97819 0.93748 0.90547 1.20742 0.87550 0.85560 0.76860 1.90691 1.14016 1.87289 1.47761 1.19655 0.87483 0.84995 0.80659 1.90638 1.13552 1.87044 1.50931 1.45617 1.13766 1.04958 1.64775 1.21372 0.95505 0.79861 0.99729 1.19208 0.95928 0.91331 0.90271 1.20550 0.97404 1.45783 0.89432 0.91907 1.24993 0.95278 0.93605 0.99145 1.69782 1.13350 1.43595 1.24239 0.86530 0.80590 0.78040 0.82618 1.20478 1.21164 1.19679 1.22946 0.97067 0.96879 1.06473 1.22957 0.97309 1.06165 0.98379 0.91948 0.92224 0.88339 0.88933 0.88679 0.84001 0.84711 0.82872 0.82997 0.75277 0.95380 0.85836 0.92611 0.91381 0.90079 0.90472 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 9.24 59.85 0.55 1.57 16 2 N -0.59 -8.36 2.86 -183.46 -0.52 -8.89 16 3 C 0.16 1.76 5.49 -5.20 -0.03 1.73 16 4 C -0.16 -1.90 5.48 -104.49 -0.57 -2.48 16 5 C -0.05 -0.62 9.73 -39.28 -0.38 -1.00 16 6 C -0.17 -1.99 10.11 -39.44 -0.40 -2.39 16 7 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 8 N -0.49 -6.27 10.36 -13.25 -0.14 -6.41 16 9 C 0.11 1.27 10.86 -17.55 -0.19 1.08 16 10 C 0.51 9.09 7.72 -11.58 -0.09 9.00 16 11 O -0.52 -9.92 15.43 5.49 0.08 -9.84 16 12 C 0.49 10.05 7.74 -11.59 -0.09 9.96 16 13 O -0.54 -11.49 13.32 5.50 0.07 -11.41 16 14 N -0.64 -14.02 5.35 -60.73 -0.32 -14.34 16 15 C 0.16 3.62 4.62 -4.04 -0.02 3.61 16 16 C 0.03 0.77 2.03 -155.66 -0.32 0.46 16 17 C -0.49 -12.50 8.38 -34.44 -0.29 -12.79 16 18 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 19 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 20 N -0.87 -22.93 10.27 55.43 0.57 -22.36 16 21 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.20 -4.15 9.96 -26.70 -0.27 -4.41 16 26 C -0.21 -4.33 9.93 -26.70 -0.27 -4.59 16 27 H 0.06 0.76 8.11 -51.92 -0.42 0.34 16 28 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 29 H 0.10 1.54 5.93 -51.93 -0.31 1.23 16 30 H 0.09 0.73 8.02 -51.93 -0.42 0.31 16 31 H 0.09 1.08 7.46 -51.92 -0.39 0.69 16 32 H 0.14 1.86 7.48 -52.48 -0.39 1.47 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.41 9.15 7.50 -40.82 -0.31 8.85 16 37 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.12 3.21 5.78 -51.93 -0.30 2.91 16 39 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -28.87 365.58 -8.29 -37.16 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.87 Total: 12.85 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.64 Total: 2.45 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.42 Total: -52.00 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.16 Total: -21.25 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.87 -8.29 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347564021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.402 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds