Wall clock time and date at job start Tue Mar 31 2020 11:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 120.00362 * 2 1 4 4 C 1.50702 * 109.47206 * 270.00088 * 3 2 1 5 5 C 1.38666 * 120.41818 * 269.72136 * 4 3 2 6 6 C 1.38630 * 118.41943 * 179.78175 * 5 4 3 7 7 C 1.38220 * 119.15906 * 0.51366 * 6 5 4 8 8 N 1.31851 * 120.76868 * 359.72664 * 7 6 5 9 9 C 1.31894 * 121.72068 * 359.97438 * 8 7 6 10 10 C 1.34781 * 119.99486 * 180.02562 * 2 1 3 11 11 O 1.21354 * 119.99733 * 174.40351 * 10 2 1 12 12 C 1.49448 * 120.00007 * 354.39505 * 10 2 1 13 13 O 1.21347 * 120.00554 * 357.61285 * 12 10 2 14 14 N 1.34779 * 119.99735 * 177.60732 * 12 10 2 15 15 C 1.46500 * 119.99792 * 175.30590 * 14 12 10 16 16 C 1.53003 * 109.46978 * 184.59936 * 15 14 12 17 17 C 1.50699 * 115.54754 * 303.66146 * 16 15 14 18 18 H 1.08002 * 120.00280 * 143.92258 * 17 16 15 19 19 C 1.37877 * 120.00420 * 323.92202 * 17 16 15 20 20 N 1.31518 * 119.99758 * 3.14304 * 19 17 16 21 21 Si 1.86796 * 120.00582 * 183.14697 * 19 17 16 22 22 H 1.48501 * 109.47335 * 89.99679 * 21 19 17 23 23 H 1.48500 * 109.47231 * 210.00006 * 21 19 17 24 24 H 1.48508 * 109.46866 * 329.99782 * 21 19 17 25 25 C 1.52992 * 117.50005 * 157.99525 * 16 15 14 26 26 C 1.52996 * 117.50384 * 89.33030 * 16 15 14 27 27 H 1.09007 * 109.47049 * 263.76878 * 1 2 3 28 28 H 1.09004 * 109.46731 * 23.75913 * 1 2 3 29 29 H 1.08993 * 109.47581 * 143.76407 * 1 2 3 30 30 H 1.09004 * 109.47304 * 30.00139 * 3 2 1 31 31 H 1.09008 * 109.47202 * 149.99856 * 3 2 1 32 32 H 1.08009 * 120.79237 * 0.02562 * 5 4 3 33 33 H 1.08001 * 120.41385 * 180.21631 * 6 5 4 34 34 H 1.08004 * 119.61428 * 179.75052 * 7 6 5 35 35 H 1.07998 * 119.61164 * 180.02562 * 9 8 7 36 36 H 0.97004 * 119.99902 * 355.03494 * 14 12 10 37 37 H 1.09002 * 109.47200 * 304.59141 * 15 14 12 38 38 H 1.08997 * 109.47098 * 64.59715 * 15 14 12 39 39 H 0.96994 * 120.00188 * 185.00413 * 20 19 17 40 40 H 1.09002 * 117.50113 * 359.97438 * 25 16 15 41 41 H 1.09008 * 117.50369 * 145.01717 * 25 16 15 42 42 H 1.08990 * 117.50312 * 214.98045 * 26 16 15 43 43 H 1.09000 * 117.49620 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6041 1.3131 -2.0808 6 6 3.7909 1.7333 -3.3887 7 6 2.8312 2.5307 -3.9834 8 7 1.7468 2.8870 -3.3235 9 6 1.5332 2.5011 -2.0805 10 6 2.1389 -1.1673 -0.0005 11 8 3.3481 -1.1698 -0.1030 12 6 1.3969 -2.4584 0.1253 13 8 0.1922 -2.4543 0.2715 14 7 2.0657 -3.6275 0.0763 15 6 1.3545 -4.8883 0.3022 16 6 2.3559 -6.0451 0.3058 17 6 3.2062 -6.1725 -0.9319 18 1 4.2345 -6.4922 -0.8501 19 6 2.6713 -5.8811 -2.1688 20 7 1.4385 -5.4327 -2.2630 21 14 3.6975 -6.1230 -3.7108 22 1 3.4995 -7.5017 -4.2259 23 1 3.2766 -5.1432 -4.7443 24 1 5.1322 -5.9165 -3.3880 25 6 1.9411 -7.3363 1.0139 26 6 2.9950 -6.4222 1.6437 27 1 -0.3633 -0.1116 1.0217 28 1 -0.3633 0.9406 -0.4141 29 1 -0.3634 -0.8288 -0.6074 30 1 1.6086 2.0283 0.5139 31 1 3.1501 1.1382 0.5139 32 1 4.3391 0.6931 -1.5890 33 1 4.6773 1.4451 -3.9342 34 1 2.9712 2.8656 -5.0006 35 1 0.6327 2.8126 -1.5722 36 1 3.0172 -3.6344 -0.1124 37 1 0.8415 -4.8489 1.2632 38 1 0.6251 -5.0415 -0.4931 39 1 1.0373 -5.2966 -3.1356 40 1 0.9549 -7.3616 1.4776 41 1 2.2835 -8.2781 0.5848 42 1 4.0302 -6.7628 1.6288 43 1 2.7024 -5.8458 2.5214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347564021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:32 Heat of formation + Delta-G solvation = -11.211159 kcal Electronic energy + Delta-G solvation = -26643.541886 eV Core-core repulsion = 22882.595670 eV Total energy + Delta-G solvation = -3760.946216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84298 -40.98026 -39.55427 -38.44519 -37.10854 -34.79034 -34.16475 -33.69603 -32.63776 -28.85441 -28.41534 -27.64101 -27.03787 -24.55248 -24.30260 -23.00457 -22.61823 -21.23108 -20.62159 -18.94937 -18.23837 -18.01458 -17.83045 -17.29646 -17.13336 -16.76426 -16.55395 -16.14473 -15.96646 -15.40928 -15.25808 -14.79842 -14.62766 -14.34838 -14.30250 -13.96700 -13.86584 -13.63725 -13.45249 -13.30852 -13.17875 -12.95592 -12.63193 -12.59819 -12.33523 -12.25085 -12.05505 -11.51189 -10.94952 -10.86701 -10.72921 -10.55142 -10.39997 -10.18870 -10.02896 -9.87880 -9.70986 -7.99782 -6.23371 0.03045 0.28802 0.49073 1.38655 1.43072 1.50008 1.51175 2.28091 2.38614 2.61777 2.90230 3.03826 3.49760 3.51718 3.68084 3.78119 3.85355 4.03129 4.04623 4.23560 4.28440 4.38294 4.50597 4.55231 4.62788 4.72028 4.75494 4.77020 4.83094 4.95996 5.03138 5.10556 5.16785 5.25276 5.27646 5.34995 5.50882 5.57916 5.66704 5.72021 5.94055 5.96583 6.34045 6.46738 6.76026 6.87775 6.95889 7.19126 7.41998 8.87183 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.004107 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.232865 B = 6815.685246 C = 8036.215653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.579 5.579 3 C 0.158 3.842 4 C -0.166 4.166 5 C -0.069 4.069 6 C -0.181 4.181 7 C 0.092 3.908 8 N -0.511 5.511 9 C 0.108 3.892 10 C 0.507 3.493 11 O -0.541 6.541 12 C 0.486 3.514 13 O -0.553 6.553 14 N -0.651 5.651 15 C 0.170 3.830 16 C 0.003 3.997 17 C -0.503 4.503 18 H 0.056 0.944 19 C 0.036 3.964 20 N -0.892 5.892 21 Si 0.944 3.056 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.269 1.269 25 C -0.191 4.191 26 C -0.189 4.189 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.407 0.593 37 H 0.032 0.968 38 H 0.093 0.907 39 H 0.258 0.742 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 15.842 2.637 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.312 5.312 3 C 0.036 3.964 4 C -0.169 4.169 5 C -0.095 4.095 6 C -0.200 4.200 7 C -0.064 4.064 8 N -0.219 5.219 9 C -0.049 4.049 10 C 0.290 3.710 11 O -0.418 6.418 12 C 0.267 3.733 13 O -0.433 6.433 14 N -0.298 5.298 15 C 0.047 3.953 16 C 0.002 3.998 17 C -0.540 4.540 18 H 0.074 0.926 19 C -0.165 4.165 20 N -0.530 5.530 21 Si 0.771 3.229 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.193 1.193 25 C -0.229 4.229 26 C -0.226 4.226 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.109 0.891 32 H 0.148 0.852 33 H 0.170 0.830 34 H 0.196 0.804 35 H 0.198 0.802 36 H 0.242 0.758 37 H 0.050 0.950 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.370 16.473 2.162 16.619 hybrid contribution 1.537 -1.238 -0.689 2.091 sum 1.167 15.235 1.473 15.351 Atomic orbital electron populations 1.22221 0.76392 1.03985 1.03575 1.47819 1.08889 1.04376 1.70076 1.20625 0.99302 0.84321 0.92115 1.21324 0.96200 1.00399 0.99005 1.21853 0.97120 0.95551 0.94998 1.22444 1.02138 0.99635 0.95802 1.23213 0.88878 0.93653 1.00694 1.67748 1.21817 1.23074 1.09300 1.23078 0.98466 0.93089 0.90296 1.20276 0.87219 0.85728 0.77769 1.90685 1.14450 1.87465 1.49216 1.20212 0.87539 0.85768 0.79779 1.90630 1.14106 1.87540 1.51073 1.45597 1.13452 1.05220 1.65574 1.21043 0.94980 0.80642 0.98599 1.19264 0.97021 0.92476 0.91022 1.20735 0.97344 1.45421 0.90535 0.92569 1.25534 0.96021 0.93725 1.01209 1.69950 1.14347 1.44582 1.24085 0.85754 0.79525 0.77711 0.79919 1.20161 1.21764 1.19339 1.22959 0.98103 0.95961 1.05895 1.22954 0.97381 1.04981 0.97322 0.91119 0.88210 0.91522 0.84666 0.89071 0.85201 0.82998 0.80443 0.80229 0.75775 0.94963 0.88967 0.93214 0.90063 0.90335 0.89987 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 9.24 127.77 1.18 3.03 16 2 N -0.58 -15.40 2.86 -852.69 -2.44 -17.83 16 3 C 0.16 3.11 5.49 85.64 0.47 3.58 16 4 C -0.17 -3.67 5.48 -19.78 -0.11 -3.78 16 5 C -0.07 -1.69 9.73 22.47 0.22 -1.47 16 6 C -0.18 -3.92 10.11 22.36 0.23 -3.69 16 7 C 0.09 1.94 11.18 84.69 0.95 2.89 16 8 N -0.51 -12.06 10.36 -195.85 -2.03 -14.09 16 9 C 0.11 2.22 10.86 84.67 0.92 3.14 16 10 C 0.51 17.99 7.72 87.27 0.67 18.66 16 11 O -0.54 -20.65 15.43 -3.26 -0.05 -20.70 16 12 C 0.49 20.07 7.74 87.27 0.68 20.74 16 13 O -0.55 -23.68 13.32 -3.24 -0.04 -23.73 16 14 N -0.65 -28.85 5.35 -464.41 -2.48 -31.34 16 15 C 0.17 7.94 4.62 86.38 0.40 8.34 16 16 C 0.00 0.13 2.03 -52.93 -0.11 0.02 16 17 C -0.50 -25.57 8.38 25.60 0.21 -25.35 16 18 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 19 C 0.04 1.87 5.38 84.65 0.46 2.33 16 20 N -0.89 -47.83 10.27 21.45 0.22 -47.61 16 21 Si 0.94 41.99 29.54 68.60 2.03 44.02 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 C -0.19 -7.92 9.96 30.62 0.30 -7.62 16 26 C -0.19 -7.50 9.93 30.62 0.30 -7.20 16 27 H 0.07 1.56 8.11 -2.38 -0.02 1.54 16 28 H 0.10 1.53 8.03 -2.38 -0.02 1.51 16 29 H 0.07 2.04 5.93 -2.39 -0.01 2.03 16 30 H 0.14 1.54 8.02 -2.38 -0.02 1.52 16 31 H 0.09 1.92 7.46 -2.38 -0.02 1.91 16 32 H 0.13 3.46 7.48 -2.91 -0.02 3.44 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.41 18.53 7.50 -92.71 -0.70 17.83 16 37 H 0.03 1.44 8.10 -2.39 -0.02 1.42 16 38 H 0.09 4.93 5.78 -2.39 -0.01 4.91 16 39 H 0.26 13.61 8.32 -92.71 -0.77 12.84 16 40 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 42 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -62.65 365.58 2.32 -60.34 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.34 Total: 37.30 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.77 Total: 13.63 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -6.73 Total: -110.87 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.09 Total: -44.42 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -62.65 2.32 -60.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347564021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.126 kcal (2) G-P(sol) polarization free energy of solvation -62.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds