Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48186 * 111.07492 * 2 1 4 4 C 1.53939 * 86.22210 * 137.46212 * 3 2 1 5 5 C 1.47963 * 111.00085 * 99.29384 * 2 1 3 6 6 H 1.09003 * 113.75707 * 336.84493 * 5 2 1 7 7 C 1.52999 * 113.76163 * 108.09772 * 5 2 1 8 8 N 1.46493 * 109.47122 * 283.68968 * 7 5 2 9 9 C 1.34782 * 120.00237 * 180.02562 * 8 7 5 10 10 O 1.21365 * 119.99354 * 359.97438 * 9 8 7 11 11 C 1.49347 * 120.00366 * 179.97438 * 9 8 7 12 12 O 1.21379 * 120.00202 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99939 * 179.97438 * 11 9 8 14 14 C 1.39744 * 119.99590 * 184.31172 * 13 11 9 15 15 C 1.39340 * 119.95438 * 324.77531 * 14 13 11 16 16 C 1.38471 * 120.42308 * 180.28126 * 15 14 13 17 17 C 1.37699 * 120.32707 * 359.48455 * 16 15 14 18 18 C 1.40749 * 119.89431 * 0.51817 * 17 16 15 19 19 C 1.41416 * 120.20557 * 179.71934 * 18 17 16 20 20 H 1.07999 * 119.99552 * 214.77047 * 19 18 17 21 21 C 1.39934 * 120.00005 * 34.76931 * 19 18 17 22 22 N 1.30832 * 119.99821 * 355.56047 * 21 19 18 23 23 Si 1.86795 * 119.99736 * 175.55849 * 21 19 18 24 24 H 1.48498 * 109.46945 * 90.00437 * 23 21 19 25 25 H 1.48502 * 109.47015 * 210.00037 * 23 21 19 26 26 H 1.48496 * 109.47308 * 330.00039 * 23 21 19 27 27 C 1.38310 * 119.95009 * 144.80521 * 14 13 11 28 28 H 1.08994 * 109.47593 * 320.70535 * 1 2 3 29 29 H 1.08999 * 109.47150 * 80.71212 * 1 2 3 30 30 H 1.09004 * 109.47340 * 200.70511 * 1 2 3 31 31 H 1.09005 * 113.65481 * 23.13968 * 3 2 1 32 32 H 1.08998 * 113.92630 * 251.82012 * 3 2 1 33 33 H 1.09005 * 113.73305 * 222.01409 * 4 3 2 34 34 H 1.08996 * 113.73361 * 90.73348 * 4 3 2 35 35 H 1.08995 * 109.46768 * 163.68489 * 7 5 2 36 36 H 1.08992 * 109.46766 * 43.68748 * 7 5 2 37 37 H 0.96998 * 120.00392 * 359.97438 * 8 7 5 38 38 H 0.96998 * 120.00033 * 4.30832 * 13 11 9 39 39 H 1.07993 * 119.78739 * 0.02562 * 15 14 13 40 40 H 1.07996 * 119.83671 * 179.74859 * 16 15 14 41 41 H 1.07995 * 120.05147 * 180.27163 * 17 16 15 42 42 H 0.97002 * 119.99380 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.16200 * 359.94847 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3827 0.0000 4 6 3.0215 0.8811 1.0385 5 6 1.9993 -0.2231 1.3632 6 1 1.3003 0.0448 2.1556 7 6 2.6263 -1.6044 1.5624 8 7 1.5666 -2.6065 1.6995 9 6 1.8850 -3.9029 1.8856 10 8 3.0496 -4.2400 1.9392 11 6 0.8046 -4.9245 2.0259 12 8 -0.3602 -4.5873 1.9728 13 7 1.1231 -6.2210 2.2115 14 6 0.1159 -7.1888 2.2526 15 6 -1.1189 -6.8842 2.8220 16 6 -2.1218 -7.8377 2.8731 17 6 -1.9130 -9.0950 2.3518 18 6 -0.6709 -9.4173 1.7736 19 6 -0.4474 -10.7084 1.2416 20 1 0.5301 -11.1614 1.3165 21 6 -1.4928 -11.3988 0.6182 22 7 -2.6972 -10.8881 0.6039 23 14 -1.1685 -13.0496 -0.1936 24 1 -1.3725 -14.1369 0.7970 25 1 -2.1051 -13.2343 -1.3311 26 1 0.2297 -13.0900 -0.6921 27 6 0.3464 -8.4479 1.7286 28 1 -0.3634 0.7952 0.6508 29 1 -0.3633 0.1659 -1.0142 30 1 -0.3634 -0.9613 0.3633 31 1 1.3024 2.1210 0.3924 32 1 2.4509 1.6834 -0.9466 33 1 3.1903 1.5779 1.8596 34 1 3.9466 0.5073 0.5999 35 1 3.2396 -1.5984 2.4634 36 1 3.2481 -1.8486 0.7012 37 1 0.6358 -2.3371 1.6570 38 1 2.0513 -6.4821 2.3165 39 1 -1.2934 -5.8996 3.2297 40 1 -3.0738 -7.5926 3.3201 41 1 -2.6998 -9.8337 2.3901 42 1 -3.4218 -11.3666 0.1714 43 1 1.3029 -8.6850 1.2868 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354533920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = -8.345616 kcal Electronic energy + Delta-G solvation = -25329.417451 eV Core-core repulsion = 21568.595494 eV Total energy + Delta-G solvation = -3760.821957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79836 -40.18877 -38.64663 -37.15399 -35.20222 -34.26266 -33.01515 -31.16439 -29.85336 -29.16459 -28.38217 -25.32349 -24.90743 -24.51660 -23.10014 -21.22529 -20.92854 -20.33341 -19.61922 -18.37245 -17.60758 -16.67000 -16.52404 -15.89755 -15.71640 -15.49790 -15.34530 -14.98439 -14.85036 -14.49288 -14.08644 -13.80653 -13.52633 -13.29723 -12.98017 -12.87971 -12.39018 -12.25015 -11.93094 -11.88482 -11.74644 -11.55234 -11.25588 -11.21552 -11.20527 -11.15032 -10.94100 -10.40705 -10.18694 -9.57338 -9.49395 -9.35727 -9.29162 -9.21146 -8.92842 -7.45166 -6.98745 -6.59609 -4.41670 1.51717 2.45561 2.79819 2.85380 3.10235 3.12470 3.21700 3.38032 3.53058 3.82622 3.98504 4.05975 4.29827 4.60282 4.65272 4.68927 4.73984 4.86217 4.88791 5.03998 5.20855 5.26602 5.39171 5.49009 5.57980 5.58953 5.71451 5.90690 6.10052 6.22224 6.43596 6.58505 6.60905 6.81692 6.88842 7.02617 7.09653 7.28863 7.50000 7.53209 7.75590 7.95380 8.02916 8.07832 8.24356 8.39408 8.63997 8.91596 8.93470 10.30311 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002290 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.920147 B =12226.161020 C =12334.338405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.477 5.477 3 C 0.000 4.000 4 C -0.134 4.134 5 C 0.012 3.988 6 H 0.088 0.912 7 C 0.138 3.862 8 N -0.701 5.701 9 C 0.511 3.489 10 O -0.523 6.523 11 C 0.497 3.503 12 O -0.507 6.507 13 N -0.630 5.630 14 C 0.133 3.867 15 C -0.212 4.212 16 C -0.104 4.104 17 C -0.150 4.150 18 C 0.114 3.886 19 C -0.466 4.466 20 H 0.076 0.924 21 C 0.071 3.929 22 N -0.812 5.812 23 Si 0.916 3.084 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.224 4.224 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.410 0.590 38 H 0.413 0.587 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.131 0.869 42 H 0.278 0.722 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 20.512 1.181 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 N -0.200 5.200 3 C -0.129 4.129 4 C -0.172 4.172 5 C -0.098 4.098 6 H 0.105 0.895 7 C 0.014 3.986 8 N -0.354 5.354 9 C 0.292 3.708 10 O -0.398 6.398 11 C 0.278 3.722 12 O -0.383 6.383 13 N -0.275 5.275 14 C 0.042 3.958 15 C -0.233 4.233 16 C -0.123 4.123 17 C -0.170 4.170 18 C 0.112 3.888 19 C -0.497 4.497 20 H 0.094 0.906 21 C -0.144 4.144 22 N -0.439 5.439 23 Si 0.741 3.259 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.188 1.188 27 C -0.246 4.246 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.246 0.754 38 H 0.249 0.751 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.265 20.022 0.531 21.306 hybrid contribution -0.394 -0.119 0.068 0.417 sum 6.871 19.903 0.599 21.064 Atomic orbital electron populations 1.22926 0.89122 1.01725 1.02535 1.68590 1.09545 1.18582 1.23303 1.23942 0.97263 0.91196 1.00475 1.23316 0.98213 0.96701 0.99016 1.23778 0.98057 0.95323 0.92601 0.89454 1.21379 0.89735 0.84727 1.02715 1.45681 1.11390 1.06288 1.72072 1.20283 0.89176 0.83719 0.77620 1.90749 1.19821 1.80517 1.48740 1.19977 0.88856 0.83980 0.79378 1.90761 1.19303 1.80080 1.48114 1.43135 1.11110 1.05293 1.67944 1.17484 0.88801 0.88112 1.01384 1.20512 0.93829 0.99902 1.09073 1.20692 0.96952 0.94240 1.00460 1.21717 0.99553 0.96050 0.99638 1.17439 0.90634 0.92267 0.88501 1.19462 0.97060 0.99880 1.33302 0.90582 1.25855 0.94400 0.98905 0.95276 1.69754 1.00921 1.37506 1.35746 0.86193 0.79315 0.81386 0.79051 1.19525 1.20321 1.18761 1.20925 1.01578 0.92607 1.09473 0.94521 0.90734 0.91012 0.91097 0.89031 0.90426 0.88497 0.90300 0.89948 0.75353 0.75139 0.87467 0.88753 0.85131 0.91123 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.48 -3.99 6.37 -237.96 -1.52 -5.50 16 3 C 0.00 0.00 7.98 -2.64 -0.02 -0.02 16 4 C -0.13 -0.74 7.86 -25.79 -0.20 -0.94 16 5 C 0.01 0.09 3.34 -66.65 -0.22 -0.13 16 6 H 0.09 0.57 7.92 -51.93 -0.41 0.16 16 7 C 0.14 1.31 5.71 -4.05 -0.02 1.28 16 8 N -0.70 -8.38 5.55 -60.77 -0.34 -8.72 16 9 C 0.51 7.81 7.89 -11.63 -0.09 7.72 16 10 O -0.52 -8.74 16.48 5.48 0.09 -8.65 16 11 C 0.50 8.97 7.72 -11.63 -0.09 8.88 16 12 O -0.51 -10.16 13.91 5.47 0.08 -10.09 16 13 N -0.63 -11.95 5.31 -10.34 -0.05 -12.01 16 14 C 0.13 3.03 6.28 -83.81 -0.53 2.50 16 15 C -0.21 -4.96 8.70 -39.09 -0.34 -5.30 16 16 C -0.10 -2.49 10.02 -39.69 -0.40 -2.89 16 17 C -0.15 -3.90 8.67 -38.83 -0.34 -4.24 16 18 C 0.11 3.04 5.55 -106.85 -0.59 2.44 16 19 C -0.47 -12.31 9.04 -37.74 -0.34 -12.66 16 20 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 21 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 22 N -0.81 -21.20 10.60 55.55 0.59 -20.61 16 23 Si 0.92 19.00 29.56 -169.99 -5.03 13.97 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.22 -5.44 9.71 -38.67 -0.38 -5.82 16 28 H 0.04 0.24 7.62 -51.93 -0.40 -0.16 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.63 7.15 -51.93 -0.37 0.26 16 31 H 0.07 0.35 7.62 -51.93 -0.40 -0.04 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.41 4.64 6.95 -40.82 -0.28 4.36 16 38 H 0.41 6.90 8.29 -40.82 -0.34 6.56 16 39 H 0.11 2.43 6.22 -52.49 -0.33 2.10 16 40 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -30.33 361.62 -9.57 -39.90 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.77 Total: 13.25 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.08 Total: -7.00 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -1.32 Total: -46.84 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.17 Total: -18.73 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.33 -9.57 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354533920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.554 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds