Wall clock time and date at job start Tue Mar 31 2020 11:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48186 * 111.07492 * 2 1 4 4 C 1.53939 * 86.22210 * 137.46212 * 3 2 1 5 5 C 1.47963 * 111.00085 * 99.29384 * 2 1 3 6 6 H 1.09003 * 113.75707 * 336.84493 * 5 2 1 7 7 C 1.52999 * 113.76163 * 108.09772 * 5 2 1 8 8 N 1.46493 * 109.47122 * 283.68968 * 7 5 2 9 9 C 1.34782 * 120.00237 * 180.02562 * 8 7 5 10 10 O 1.21365 * 119.99354 * 359.97438 * 9 8 7 11 11 C 1.49347 * 120.00366 * 179.97438 * 9 8 7 12 12 O 1.21379 * 120.00202 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99939 * 179.97438 * 11 9 8 14 14 C 1.39744 * 119.99590 * 184.31172 * 13 11 9 15 15 C 1.39340 * 119.95438 * 324.77531 * 14 13 11 16 16 C 1.38471 * 120.42308 * 180.28126 * 15 14 13 17 17 C 1.37699 * 120.32707 * 359.48455 * 16 15 14 18 18 C 1.40749 * 119.89431 * 0.51817 * 17 16 15 19 19 C 1.41416 * 120.20557 * 179.71934 * 18 17 16 20 20 H 1.07999 * 119.99552 * 214.77047 * 19 18 17 21 21 C 1.39934 * 120.00005 * 34.76931 * 19 18 17 22 22 N 1.30832 * 119.99821 * 355.56047 * 21 19 18 23 23 Si 1.86795 * 119.99736 * 175.55849 * 21 19 18 24 24 H 1.48498 * 109.46945 * 90.00437 * 23 21 19 25 25 H 1.48502 * 109.47015 * 210.00037 * 23 21 19 26 26 H 1.48496 * 109.47308 * 330.00039 * 23 21 19 27 27 C 1.38310 * 119.95009 * 144.80521 * 14 13 11 28 28 H 1.08994 * 109.47593 * 320.70535 * 1 2 3 29 29 H 1.08999 * 109.47150 * 80.71212 * 1 2 3 30 30 H 1.09004 * 109.47340 * 200.70511 * 1 2 3 31 31 H 1.09005 * 113.65481 * 23.13968 * 3 2 1 32 32 H 1.08998 * 113.92630 * 251.82012 * 3 2 1 33 33 H 1.09005 * 113.73305 * 222.01409 * 4 3 2 34 34 H 1.08996 * 113.73361 * 90.73348 * 4 3 2 35 35 H 1.08995 * 109.46768 * 163.68489 * 7 5 2 36 36 H 1.08992 * 109.46766 * 43.68748 * 7 5 2 37 37 H 0.96998 * 120.00392 * 359.97438 * 8 7 5 38 38 H 0.96998 * 120.00033 * 4.30832 * 13 11 9 39 39 H 1.07993 * 119.78739 * 0.02562 * 15 14 13 40 40 H 1.07996 * 119.83671 * 179.74859 * 16 15 14 41 41 H 1.07995 * 120.05147 * 180.27163 * 17 16 15 42 42 H 0.97002 * 119.99380 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.16200 * 359.94847 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3827 0.0000 4 6 3.0215 0.8811 1.0385 5 6 1.9993 -0.2231 1.3632 6 1 1.3003 0.0448 2.1556 7 6 2.6263 -1.6044 1.5624 8 7 1.5666 -2.6065 1.6995 9 6 1.8850 -3.9029 1.8856 10 8 3.0496 -4.2400 1.9392 11 6 0.8046 -4.9245 2.0259 12 8 -0.3602 -4.5873 1.9728 13 7 1.1231 -6.2210 2.2115 14 6 0.1159 -7.1888 2.2526 15 6 -1.1189 -6.8842 2.8220 16 6 -2.1218 -7.8377 2.8731 17 6 -1.9130 -9.0950 2.3518 18 6 -0.6709 -9.4173 1.7736 19 6 -0.4474 -10.7084 1.2416 20 1 0.5301 -11.1614 1.3165 21 6 -1.4928 -11.3988 0.6182 22 7 -2.6972 -10.8881 0.6039 23 14 -1.1685 -13.0496 -0.1936 24 1 -1.3725 -14.1369 0.7970 25 1 -2.1051 -13.2343 -1.3311 26 1 0.2297 -13.0900 -0.6921 27 6 0.3464 -8.4479 1.7286 28 1 -0.3634 0.7952 0.6508 29 1 -0.3633 0.1659 -1.0142 30 1 -0.3634 -0.9613 0.3633 31 1 1.3024 2.1210 0.3924 32 1 2.4509 1.6834 -0.9466 33 1 3.1903 1.5779 1.8596 34 1 3.9466 0.5073 0.5999 35 1 3.2396 -1.5984 2.4634 36 1 3.2481 -1.8486 0.7012 37 1 0.6358 -2.3371 1.6570 38 1 2.0513 -6.4821 2.3165 39 1 -1.2934 -5.8996 3.2297 40 1 -3.0738 -7.5926 3.3201 41 1 -2.6998 -9.8337 2.3901 42 1 -3.4218 -11.3666 0.1714 43 1 1.3029 -8.6850 1.2868 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354533920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:48 Heat of formation + Delta-G solvation = -30.550672 kcal Electronic energy + Delta-G solvation = -25330.380334 eV Core-core repulsion = 21568.595494 eV Total energy + Delta-G solvation = -3761.784840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.03410 -41.00067 -40.03117 -38.88634 -36.57509 -35.70081 -34.80569 -31.79611 -31.74658 -30.46560 -29.65470 -27.22739 -26.11228 -25.06135 -24.05235 -22.98570 -22.52568 -21.48571 -20.62708 -19.71155 -19.32040 -17.90442 -17.38235 -17.33307 -17.05766 -16.74016 -16.62920 -16.36502 -16.02604 -15.75366 -15.37218 -15.02934 -14.79630 -14.64017 -14.11422 -14.05246 -13.99410 -13.61488 -13.11993 -13.06992 -12.95763 -12.86699 -12.74837 -12.44832 -12.38364 -12.15657 -11.95838 -11.82336 -11.71024 -11.45755 -11.26690 -10.91805 -10.60569 -10.36940 -9.80394 -9.38265 -8.85164 -8.48770 -6.41683 0.11499 0.93713 0.99042 1.27325 1.40971 1.50236 1.56466 2.09316 2.24278 2.54174 2.79378 2.89521 3.32866 3.55530 3.63554 3.72118 4.03194 4.13543 4.30069 4.38830 4.38988 4.49210 4.59039 4.60781 4.76910 4.81837 4.89315 4.95533 4.98157 5.00784 5.05341 5.08718 5.10853 5.24349 5.35682 5.36985 5.64670 5.69188 5.89706 6.04861 6.07274 6.10442 6.23517 6.42182 6.63917 6.69015 6.86303 6.94977 7.01202 8.42501 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002290 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.920147 B =12226.161020 C =12334.338405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.504 5.504 3 C 0.001 3.999 4 C -0.124 4.124 5 C 0.014 3.986 6 H 0.099 0.901 7 C 0.136 3.864 8 N -0.683 5.683 9 C 0.519 3.481 10 O -0.538 6.538 11 C 0.498 3.502 12 O -0.527 6.527 13 N -0.629 5.629 14 C 0.143 3.857 15 C -0.219 4.219 16 C -0.103 4.103 17 C -0.175 4.175 18 C 0.086 3.914 19 C -0.497 4.497 20 H 0.078 0.922 21 C 0.027 3.973 22 N -0.842 5.842 23 Si 0.989 3.011 24 H -0.261 1.261 25 H -0.271 1.271 26 H -0.260 1.260 27 C -0.236 4.236 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.415 0.585 38 H 0.423 0.577 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.284 0.716 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 22.015 1.070 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 N -0.227 5.227 3 C -0.127 4.127 4 C -0.162 4.162 5 C -0.096 4.096 6 H 0.117 0.883 7 C 0.013 3.987 8 N -0.336 5.336 9 C 0.299 3.701 10 O -0.415 6.415 11 C 0.280 3.720 12 O -0.403 6.403 13 N -0.275 5.275 14 C 0.051 3.949 15 C -0.240 4.240 16 C -0.122 4.122 17 C -0.195 4.195 18 C 0.084 3.916 19 C -0.528 4.528 20 H 0.096 0.904 21 C -0.185 4.185 22 N -0.469 5.469 23 Si 0.810 3.190 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.184 1.184 27 C -0.257 4.257 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.252 0.748 38 H 0.262 0.738 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.220 21.585 0.429 23.101 hybrid contribution -0.687 -0.418 0.113 0.813 sum 7.532 21.166 0.542 22.473 Atomic orbital electron populations 1.22905 0.89243 1.01509 1.02605 1.68583 1.09673 1.20433 1.24027 1.24005 0.97461 0.90308 1.00909 1.23293 0.97544 0.96008 0.99361 1.23808 0.98938 0.94291 0.92569 0.88301 1.21606 0.89165 0.85071 1.02819 1.45733 1.12440 1.05452 1.69969 1.19692 0.87928 0.84163 0.78342 1.90753 1.19847 1.80793 1.50125 1.20513 0.89392 0.83991 0.78090 1.90744 1.20470 1.80418 1.48671 1.43063 1.10948 1.05236 1.68234 1.17492 0.89379 0.88345 0.99729 1.20694 0.94036 1.00092 1.09143 1.20928 0.98097 0.93519 0.99655 1.21649 0.99457 0.96823 1.01606 1.17803 0.91532 0.93232 0.89054 1.19746 0.97771 1.00643 1.34648 0.90383 1.26768 0.93853 1.02521 0.95364 1.69839 1.01794 1.39072 1.36234 0.85088 0.79232 0.76546 0.78112 1.18540 1.19609 1.18378 1.21050 1.01660 0.93038 1.09967 0.93063 0.91119 0.92322 0.89809 0.88895 0.88420 0.88591 0.89153 0.90927 0.74836 0.73835 0.86550 0.86562 0.86672 0.90504 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.20 9.65 127.69 1.23 1.04 16 2 N -0.50 -7.53 6.37 -906.76 -5.77 -13.30 16 3 C 0.00 0.01 7.98 86.36 0.69 0.70 16 4 C -0.12 -1.01 7.86 31.24 0.25 -0.77 16 5 C 0.01 0.17 3.34 45.02 0.15 0.32 16 6 H 0.10 1.01 7.92 -2.39 -0.02 0.99 16 7 C 0.14 2.31 5.71 86.38 0.49 2.81 16 8 N -0.68 -15.31 5.55 -464.53 -2.58 -17.89 16 9 C 0.52 15.20 7.89 87.24 0.69 15.88 16 10 O -0.54 -17.27 16.48 -3.29 -0.05 -17.33 16 11 C 0.50 17.53 7.72 87.24 0.67 18.21 16 12 O -0.53 -20.67 13.91 -3.34 -0.05 -20.72 16 13 N -0.63 -23.45 5.31 -304.97 -1.62 -25.07 16 14 C 0.14 6.48 6.28 38.16 0.24 6.72 16 15 C -0.22 -10.17 8.70 22.59 0.20 -9.98 16 16 C -0.10 -4.96 10.02 22.20 0.22 -4.74 16 17 C -0.18 -9.39 8.67 22.76 0.20 -9.19 16 18 C 0.09 4.71 5.55 -21.31 -0.12 4.59 16 19 C -0.50 -26.86 9.04 23.46 0.21 -26.65 16 20 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 21 C 0.03 1.38 5.42 85.25 0.46 1.84 16 22 N -0.84 -44.79 10.60 21.82 0.23 -44.56 16 23 Si 0.99 38.94 29.56 68.60 2.03 40.97 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 C -0.24 -11.58 9.71 22.86 0.22 -11.36 16 28 H 0.05 0.57 7.62 -2.39 -0.02 0.55 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.97 7.15 -2.38 -0.02 0.96 16 31 H 0.08 0.60 7.62 -2.38 -0.02 0.58 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.44 8.14 -2.38 -0.02 0.43 16 34 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.41 8.79 6.95 -92.71 -0.64 8.15 16 38 H 0.42 13.85 8.29 -92.71 -0.77 13.08 16 39 H 0.12 5.17 6.22 -2.91 -0.02 5.16 16 40 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.12 6.44 6.13 -2.91 -0.02 6.42 16 42 H 0.28 13.78 8.30 -92.71 -0.77 13.01 16 43 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -65.42 361.62 -2.36 -67.78 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.36 Total: 40.70 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 5.81 Total: -10.58 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -9.74 Total: -100.82 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.10 Total: -38.05 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -65.42 -2.36 -67.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354533920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.233 kcal (2) G-P(sol) polarization free energy of solvation -65.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds