Wall clock time and date at job start Tue Mar 31 2020 11:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47955 * 110.99642 * 2 1 4 4 C 1.53929 * 86.18317 * 222.41543 * 3 2 1 5 5 C 1.47962 * 110.99969 * 260.64588 * 2 1 3 6 6 H 1.08998 * 113.86126 * 23.24721 * 5 2 1 7 7 C 1.53000 * 113.75614 * 251.90111 * 5 2 1 8 8 N 1.46501 * 109.47416 * 78.43438 * 7 5 2 9 9 C 1.34773 * 119.99805 * 179.97438 * 8 7 5 10 10 O 1.21364 * 120.00137 * 359.97438 * 9 8 7 11 11 C 1.49354 * 119.99814 * 180.02562 * 9 8 7 12 12 O 1.21373 * 120.00261 * 359.97438 * 11 9 8 13 13 N 1.34783 * 120.00255 * 179.97438 * 11 9 8 14 14 C 1.39732 * 120.00285 * 185.67496 * 13 11 9 15 15 C 1.39336 * 119.95797 * 324.94938 * 14 13 11 16 16 C 1.38474 * 120.43018 * 180.02562 * 15 14 13 17 17 C 1.37695 * 120.32446 * 359.67035 * 16 15 14 18 18 C 1.40747 * 119.89466 * 0.62588 * 17 16 15 19 19 C 1.41410 * 120.20706 * 179.67843 * 18 17 16 20 20 H 1.08004 * 120.00251 * 157.05176 * 19 18 17 21 21 C 1.39931 * 119.99804 * 337.04248 * 19 18 17 22 22 N 1.30830 * 120.00246 * 329.88817 * 21 19 18 23 23 Si 1.86801 * 120.00112 * 150.16892 * 21 19 18 24 24 H 1.48495 * 109.47455 * 179.72367 * 23 21 19 25 25 H 1.48501 * 109.46836 * 299.72265 * 23 21 19 26 26 H 1.48500 * 109.47131 * 59.72069 * 23 21 19 27 27 C 1.38305 * 119.95125 * 144.96574 * 14 13 11 28 28 H 1.09000 * 109.46694 * 159.35533 * 1 2 3 29 29 H 1.08996 * 109.47040 * 279.35792 * 1 2 3 30 30 H 1.08995 * 109.46846 * 39.35860 * 1 2 3 31 31 H 1.09007 * 113.75818 * 108.09939 * 3 2 1 32 32 H 1.09000 * 113.86467 * 336.75082 * 3 2 1 33 33 H 1.08997 * 113.73925 * 269.36815 * 4 3 2 34 34 H 1.09000 * 113.83069 * 138.09057 * 4 3 2 35 35 H 1.09004 * 109.47202 * 318.43722 * 7 5 2 36 36 H 1.09006 * 109.47315 * 198.44185 * 7 5 2 37 37 H 0.96994 * 119.99916 * 0.02562 * 8 7 5 38 38 H 0.97002 * 119.99861 * 5.68248 * 13 11 9 39 39 H 1.08008 * 119.78553 * 359.97438 * 15 14 13 40 40 H 1.07993 * 119.83699 * 179.97438 * 16 15 14 41 41 H 1.07997 * 120.05406 * 180.33021 * 17 16 15 42 42 H 0.97002 * 119.99720 * 354.38823 * 22 21 19 43 43 H 1.08000 * 120.16548 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8794 -1.0359 5 6 1.9993 -0.2245 -1.3630 6 1 1.3023 0.0434 -2.1569 7 6 2.6263 -1.6061 -1.5606 8 7 1.5672 -2.6009 -1.7472 9 6 1.8859 -3.8961 -1.9408 10 8 3.0501 -4.2381 -1.9611 11 6 0.8062 -4.9102 -2.1316 12 8 -0.3582 -4.5681 -2.1118 13 7 1.1247 -6.2054 -2.3258 14 6 0.1238 -7.1343 -2.6221 15 6 -1.1396 -7.0023 -2.0493 16 6 -2.1385 -7.9175 -2.3357 17 6 -1.8959 -8.9651 -3.1958 18 6 -0.6229 -9.1151 -3.7771 19 6 -0.3646 -10.1924 -4.6559 20 1 0.4391 -10.1227 -5.3741 21 6 -1.1500 -11.3489 -4.5949 22 7 -1.6827 -11.7187 -3.4587 23 14 -1.4316 -12.3690 -6.1343 24 1 -2.2863 -13.5376 -5.8043 25 1 -2.1063 -11.5370 -7.1628 26 1 -0.1260 -12.8431 -6.6595 27 6 0.3886 -8.1837 -3.4832 28 1 -0.3633 -0.9617 -0.3623 29 1 -0.3633 0.1671 1.0139 30 1 -0.3633 0.7946 -0.6517 31 1 2.4459 1.6803 0.9483 32 1 1.3022 2.1212 -0.3935 33 1 3.9451 0.5052 -0.5952 34 1 3.1934 1.5749 -1.8573 35 1 3.2179 -1.8656 -0.6826 36 1 3.2696 -1.5907 -2.4404 37 1 0.6368 -2.3274 -1.7321 38 1 2.0488 -6.4927 -2.2598 39 1 -1.3408 -6.1813 -1.3770 40 1 -3.1141 -7.8063 -1.8861 41 1 -2.6798 -9.6733 -3.4202 42 1 -1.4679 -11.2390 -2.6434 43 1 1.3673 -8.2870 -3.9279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354533921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:52 Heat of formation + Delta-G solvation = -15.869613 kcal Electronic energy + Delta-G solvation = -25309.285398 eV Core-core repulsion = 21548.137176 eV Total energy + Delta-G solvation = -3761.148222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85059 -40.25003 -38.72122 -37.32307 -35.31741 -34.46484 -33.15437 -31.19416 -29.79842 -29.20722 -28.38966 -25.15500 -24.98046 -24.55060 -23.14022 -21.35687 -21.02570 -20.39267 -19.71609 -18.43766 -18.07497 -16.78718 -16.54698 -16.00713 -15.86919 -15.53942 -15.37431 -14.93163 -14.81063 -14.27294 -14.07678 -13.93295 -13.57003 -13.54501 -13.17561 -12.83284 -12.46596 -12.28899 -12.06274 -11.95455 -11.91987 -11.62751 -11.32732 -11.27485 -11.22942 -11.10230 -10.63931 -10.41934 -10.21469 -9.76067 -9.54560 -9.39852 -9.31659 -9.19754 -8.84583 -7.70916 -7.29190 -7.15434 -4.47067 1.45428 2.38651 2.73102 2.78333 3.15153 3.25642 3.33552 3.36060 3.46791 3.77599 4.00258 4.03038 4.26618 4.50552 4.57579 4.63130 4.65833 4.83022 4.85607 5.00665 5.18418 5.23372 5.36906 5.45275 5.45986 5.53382 5.68433 5.87964 6.05230 6.10219 6.38623 6.51378 6.54957 6.68659 6.76360 6.86449 7.03558 7.31867 7.41786 7.63816 7.69377 7.78412 7.84853 7.95764 8.14439 8.19003 8.38333 8.71539 8.85049 9.99339 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035330 B = 0.002210 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.337563 B =12666.839001 C =13140.176460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.477 5.477 3 C 0.000 4.000 4 C -0.134 4.134 5 C 0.012 3.988 6 H 0.088 0.912 7 C 0.138 3.862 8 N -0.701 5.701 9 C 0.511 3.489 10 O -0.521 6.521 11 C 0.499 3.501 12 O -0.506 6.506 13 N -0.632 5.632 14 C 0.158 3.842 15 C -0.242 4.242 16 C -0.075 4.075 17 C -0.223 4.223 18 C 0.109 3.891 19 C -0.525 4.525 20 H 0.076 0.924 21 C 0.043 3.957 22 N -0.788 5.788 23 Si 1.063 2.937 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.276 1.276 27 C -0.247 4.247 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.410 0.590 38 H 0.413 0.587 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.300 0.700 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 21.324 4.109 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 N -0.200 5.200 3 C -0.129 4.129 4 C -0.173 4.173 5 C -0.098 4.098 6 H 0.106 0.894 7 C 0.014 3.986 8 N -0.354 5.354 9 C 0.292 3.708 10 O -0.397 6.397 11 C 0.280 3.720 12 O -0.381 6.381 13 N -0.277 5.277 14 C 0.067 3.933 15 C -0.263 4.263 16 C -0.094 4.094 17 C -0.242 4.242 18 C 0.106 3.894 19 C -0.552 4.552 20 H 0.094 0.906 21 C -0.181 4.181 22 N -0.410 5.410 23 Si 0.886 3.114 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.201 1.201 27 C -0.268 4.268 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.246 0.754 38 H 0.249 0.751 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.645 19.549 4.123 20.761 hybrid contribution 0.412 1.963 0.063 2.007 sum 6.057 21.511 4.186 22.737 Atomic orbital electron populations 1.22925 0.89181 1.01740 1.02486 1.68554 1.09529 1.18559 1.23355 1.23901 0.97287 0.91195 1.00495 1.23319 0.98198 0.96706 0.99041 1.23782 0.98082 0.95315 0.92582 0.89400 1.21392 0.89685 0.84881 1.02621 1.45685 1.11454 1.06597 1.71690 1.20253 0.89141 0.83726 0.77694 1.90755 1.19807 1.80225 1.48919 1.19995 0.88875 0.83769 0.79398 1.90755 1.19298 1.80001 1.48042 1.43160 1.11771 1.06241 1.66520 1.17509 0.88335 0.89914 0.97572 1.20401 0.93468 1.03549 1.08892 1.20520 0.96963 0.94429 0.97441 1.21210 0.97107 1.01059 1.04844 1.17396 0.90142 0.91822 0.90086 1.20493 1.16735 1.00448 1.17560 0.90550 1.27021 0.91488 0.96936 1.02614 1.70465 1.33466 1.36508 1.00557 0.83672 0.77711 0.76057 0.73917 1.19870 1.19920 1.20096 1.20653 0.99370 1.00990 1.05787 0.91054 0.90774 0.94493 0.89044 0.91059 0.88503 0.90403 0.89891 0.90250 0.75357 0.75052 0.87236 0.88713 0.87574 0.88715 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.07 0.58 0.47 16 2 N -0.48 -3.80 6.36 -238.97 -1.52 -5.32 16 3 C 0.00 0.00 7.96 -2.77 -0.02 -0.02 16 4 C -0.13 -0.72 7.85 -25.80 -0.20 -0.92 16 5 C 0.01 0.09 3.35 -66.65 -0.22 -0.14 16 6 H 0.09 0.57 7.93 -51.93 -0.41 0.16 16 7 C 0.14 1.28 5.71 -4.04 -0.02 1.26 16 8 N -0.70 -8.24 5.55 -60.76 -0.34 -8.57 16 9 C 0.51 7.74 7.89 -11.63 -0.09 7.65 16 10 O -0.52 -8.70 16.49 5.48 0.09 -8.61 16 11 C 0.50 8.93 7.74 -11.63 -0.09 8.84 16 12 O -0.51 -9.98 13.86 5.48 0.08 -9.91 16 13 N -0.63 -12.03 5.31 -10.34 -0.05 -12.08 16 14 C 0.16 3.60 6.29 -83.82 -0.53 3.08 16 15 C -0.24 -5.67 8.71 -39.09 -0.34 -6.01 16 16 C -0.07 -1.77 10.02 -39.69 -0.40 -2.17 16 17 C -0.22 -5.71 8.07 -38.83 -0.31 -6.03 16 18 C 0.11 2.88 5.32 -106.85 -0.57 2.31 16 19 C -0.52 -13.81 8.95 -37.74 -0.34 -14.15 16 20 H 0.08 1.96 8.00 -52.48 -0.42 1.54 16 21 C 0.04 1.07 4.83 -17.34 -0.08 0.99 16 22 N -0.79 -20.63 12.30 55.55 0.68 -19.95 16 23 Si 1.06 21.33 30.02 -169.99 -5.10 16.23 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 27 C -0.25 -6.01 9.71 -38.66 -0.38 -6.39 16 28 H 0.07 0.59 7.30 -51.93 -0.38 0.21 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.23 7.62 -51.93 -0.40 -0.17 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.34 7.62 -51.93 -0.40 -0.05 16 33 H 0.10 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.41 4.53 7.10 -40.82 -0.29 4.24 16 38 H 0.41 7.01 8.30 -40.82 -0.34 6.67 16 39 H 0.11 2.50 6.17 -52.48 -0.32 2.18 16 40 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.11 2.78 6.49 -52.49 -0.34 2.44 16 42 H 0.30 8.05 6.98 -40.82 -0.28 7.77 16 43 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -30.07 361.68 -9.49 -39.55 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.76 Total: 14.45 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.02 Total: -11.24 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -1.23 Total: -45.93 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.52 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.10 Total: 16.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.07 -9.49 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354533921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.684 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds