Wall clock time and date at job start Tue Mar 31 2020 11:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47955 * 110.99642 * 2 1 4 4 C 1.53929 * 86.18317 * 222.41543 * 3 2 1 5 5 C 1.47962 * 110.99969 * 260.64588 * 2 1 3 6 6 H 1.08998 * 113.86126 * 23.24721 * 5 2 1 7 7 C 1.53000 * 113.75614 * 251.90111 * 5 2 1 8 8 N 1.46501 * 109.47416 * 78.43438 * 7 5 2 9 9 C 1.34773 * 119.99805 * 179.97438 * 8 7 5 10 10 O 1.21364 * 120.00137 * 359.97438 * 9 8 7 11 11 C 1.49354 * 119.99814 * 180.02562 * 9 8 7 12 12 O 1.21373 * 120.00261 * 359.97438 * 11 9 8 13 13 N 1.34783 * 120.00255 * 179.97438 * 11 9 8 14 14 C 1.39732 * 120.00285 * 185.67496 * 13 11 9 15 15 C 1.39336 * 119.95797 * 324.94938 * 14 13 11 16 16 C 1.38474 * 120.43018 * 180.02562 * 15 14 13 17 17 C 1.37695 * 120.32446 * 359.67035 * 16 15 14 18 18 C 1.40747 * 119.89466 * 0.62588 * 17 16 15 19 19 C 1.41410 * 120.20706 * 179.67843 * 18 17 16 20 20 H 1.08004 * 120.00251 * 157.05176 * 19 18 17 21 21 C 1.39931 * 119.99804 * 337.04248 * 19 18 17 22 22 N 1.30830 * 120.00246 * 329.88817 * 21 19 18 23 23 Si 1.86801 * 120.00112 * 150.16892 * 21 19 18 24 24 H 1.48495 * 109.47455 * 179.72367 * 23 21 19 25 25 H 1.48501 * 109.46836 * 299.72265 * 23 21 19 26 26 H 1.48500 * 109.47131 * 59.72069 * 23 21 19 27 27 C 1.38305 * 119.95125 * 144.96574 * 14 13 11 28 28 H 1.09000 * 109.46694 * 159.35533 * 1 2 3 29 29 H 1.08996 * 109.47040 * 279.35792 * 1 2 3 30 30 H 1.08995 * 109.46846 * 39.35860 * 1 2 3 31 31 H 1.09007 * 113.75818 * 108.09939 * 3 2 1 32 32 H 1.09000 * 113.86467 * 336.75082 * 3 2 1 33 33 H 1.08997 * 113.73925 * 269.36815 * 4 3 2 34 34 H 1.09000 * 113.83069 * 138.09057 * 4 3 2 35 35 H 1.09004 * 109.47202 * 318.43722 * 7 5 2 36 36 H 1.09006 * 109.47315 * 198.44185 * 7 5 2 37 37 H 0.96994 * 119.99916 * 0.02562 * 8 7 5 38 38 H 0.97002 * 119.99861 * 5.68248 * 13 11 9 39 39 H 1.08008 * 119.78553 * 359.97438 * 15 14 13 40 40 H 1.07993 * 119.83699 * 179.97438 * 16 15 14 41 41 H 1.07997 * 120.05406 * 180.33021 * 17 16 15 42 42 H 0.97002 * 119.99720 * 354.38823 * 22 21 19 43 43 H 1.08000 * 120.16548 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8794 -1.0359 5 6 1.9993 -0.2245 -1.3630 6 1 1.3023 0.0434 -2.1569 7 6 2.6263 -1.6061 -1.5606 8 7 1.5672 -2.6009 -1.7472 9 6 1.8859 -3.8961 -1.9408 10 8 3.0501 -4.2381 -1.9611 11 6 0.8062 -4.9102 -2.1316 12 8 -0.3582 -4.5681 -2.1118 13 7 1.1247 -6.2054 -2.3258 14 6 0.1238 -7.1343 -2.6221 15 6 -1.1396 -7.0023 -2.0493 16 6 -2.1385 -7.9175 -2.3357 17 6 -1.8959 -8.9651 -3.1958 18 6 -0.6229 -9.1151 -3.7771 19 6 -0.3646 -10.1924 -4.6559 20 1 0.4391 -10.1227 -5.3741 21 6 -1.1500 -11.3489 -4.5949 22 7 -1.6827 -11.7187 -3.4587 23 14 -1.4316 -12.3690 -6.1343 24 1 -2.2863 -13.5376 -5.8043 25 1 -2.1063 -11.5370 -7.1628 26 1 -0.1260 -12.8431 -6.6595 27 6 0.3886 -8.1837 -3.4832 28 1 -0.3633 -0.9617 -0.3623 29 1 -0.3633 0.1671 1.0139 30 1 -0.3633 0.7946 -0.6517 31 1 2.4459 1.6803 0.9483 32 1 1.3022 2.1212 -0.3935 33 1 3.9451 0.5052 -0.5952 34 1 3.1934 1.5749 -1.8573 35 1 3.2179 -1.8656 -0.6826 36 1 3.2696 -1.5907 -2.4404 37 1 0.6368 -2.3274 -1.7321 38 1 2.0488 -6.4927 -2.2598 39 1 -1.3408 -6.1813 -1.3770 40 1 -3.1141 -7.8063 -1.8861 41 1 -2.6798 -9.6733 -3.4202 42 1 -1.4679 -11.2390 -2.6434 43 1 1.3673 -8.2870 -3.9279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354533921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:51 Heat of formation + Delta-G solvation = -37.795045 kcal Electronic energy + Delta-G solvation = -25310.236156 eV Core-core repulsion = 21548.137176 eV Total energy + Delta-G solvation = -3762.098980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09274 -41.04253 -40.11477 -39.05265 -36.77020 -35.84165 -34.91114 -31.77459 -31.72501 -30.48924 -29.67252 -27.08359 -26.17014 -25.06938 -24.08096 -23.16672 -22.59301 -21.58577 -20.68487 -19.93282 -19.64464 -18.04579 -17.45904 -17.33266 -17.06537 -16.84318 -16.57140 -16.08491 -15.90091 -15.84854 -15.59235 -15.11627 -15.04633 -14.61611 -14.25029 -14.05768 -13.98850 -13.92343 -13.20724 -13.15160 -13.07620 -12.80200 -12.46538 -12.40666 -12.31990 -12.10373 -11.94994 -11.85463 -11.71967 -11.55615 -11.28565 -10.84159 -10.63529 -10.40278 -9.82480 -9.67040 -9.25136 -9.01956 -6.48836 0.04701 0.84115 0.88160 1.22178 1.52516 1.64642 1.82209 2.02784 2.32899 2.49433 2.63051 2.87192 3.26764 3.50099 3.54209 3.70277 4.01402 4.12192 4.25916 4.28278 4.37699 4.48570 4.54722 4.57401 4.69217 4.74771 4.80641 4.82329 4.92472 4.94463 4.96996 4.99772 5.06242 5.22868 5.35917 5.42468 5.55147 5.67959 5.77690 5.86236 5.90100 6.03415 6.17013 6.22159 6.39379 6.60708 6.73379 6.81596 6.91704 7.98760 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035330 B = 0.002210 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.337563 B =12666.839001 C =13140.176460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.501 5.501 3 C 0.002 3.998 4 C -0.125 4.125 5 C 0.013 3.987 6 H 0.098 0.902 7 C 0.136 3.864 8 N -0.683 5.683 9 C 0.519 3.481 10 O -0.538 6.538 11 C 0.500 3.500 12 O -0.523 6.523 13 N -0.632 5.632 14 C 0.167 3.833 15 C -0.247 4.247 16 C -0.074 4.074 17 C -0.243 4.243 18 C 0.085 3.915 19 C -0.554 4.554 20 H 0.075 0.925 21 C 0.008 3.992 22 N -0.804 5.804 23 Si 1.115 2.885 24 H -0.271 1.271 25 H -0.265 1.265 26 H -0.256 1.256 27 C -0.260 4.260 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.423 0.577 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.285 0.715 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 23.224 3.668 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 N -0.224 5.224 3 C -0.127 4.127 4 C -0.163 4.163 5 C -0.096 4.096 6 H 0.116 0.884 7 C 0.013 3.987 8 N -0.335 5.335 9 C 0.299 3.701 10 O -0.415 6.415 11 C 0.282 3.718 12 O -0.399 6.399 13 N -0.278 5.278 14 C 0.074 3.926 15 C -0.268 4.268 16 C -0.092 4.092 17 C -0.262 4.262 18 C 0.081 3.919 19 C -0.581 4.581 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.426 5.426 23 Si 0.932 3.068 24 H -0.195 1.195 25 H -0.190 1.190 26 H -0.181 1.181 27 C -0.281 4.281 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.261 0.739 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.251 21.514 3.710 22.709 hybrid contribution 0.257 1.561 0.316 1.613 sum 6.508 23.075 4.026 24.311 Atomic orbital electron populations 1.22911 0.89223 1.01526 1.02647 1.68548 1.09713 1.20309 1.23875 1.23961 0.97431 0.90350 1.00920 1.23300 0.97598 0.96011 0.99394 1.23803 0.98956 0.94257 0.92630 0.88412 1.21611 0.89162 0.85261 1.02627 1.45731 1.12519 1.05697 1.69560 1.19667 0.87882 0.84190 0.78398 1.90759 1.19887 1.80521 1.50351 1.20526 0.89433 0.83717 0.78109 1.90738 1.20386 1.80276 1.48501 1.43099 1.11556 1.06346 1.66782 1.17516 0.88971 0.89851 0.96215 1.20606 0.93706 1.03562 1.08887 1.20788 0.98249 0.93590 0.96615 1.21165 0.96804 1.01876 1.06401 1.17741 0.90955 0.92631 0.90553 1.20713 1.17823 1.01334 1.18277 0.90700 1.28443 0.90335 0.97598 1.04598 1.70578 1.34611 1.36809 1.00601 0.83035 0.78606 0.74734 0.70438 1.19517 1.18969 1.18054 1.20787 0.99466 1.01414 1.06439 0.92251 0.90963 0.93207 0.88811 0.89836 0.88546 0.88565 0.90695 0.89368 0.74775 0.73874 0.86414 0.86312 0.88874 0.90334 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.65 127.69 1.23 1.04 16 2 N -0.50 -7.05 6.36 -909.98 -5.79 -12.83 16 3 C 0.00 0.01 7.96 86.40 0.69 0.70 16 4 C -0.12 -0.99 7.85 31.24 0.25 -0.75 16 5 C 0.01 0.16 3.35 45.02 0.15 0.31 16 6 H 0.10 1.00 7.93 -2.39 -0.02 0.98 16 7 C 0.14 2.27 5.71 86.38 0.49 2.77 16 8 N -0.68 -14.95 5.55 -464.49 -2.58 -17.52 16 9 C 0.52 15.03 7.89 87.24 0.69 15.71 16 10 O -0.54 -17.24 16.49 -3.29 -0.05 -17.30 16 11 C 0.50 17.39 7.74 87.24 0.67 18.07 16 12 O -0.52 -20.10 13.86 -3.32 -0.05 -20.14 16 13 N -0.63 -23.62 5.31 -304.99 -1.62 -25.24 16 14 C 0.17 7.58 6.29 38.16 0.24 7.82 16 15 C -0.25 -11.44 8.71 22.59 0.20 -11.25 16 16 C -0.07 -3.49 10.02 22.20 0.22 -3.27 16 17 C -0.24 -12.74 8.07 22.75 0.18 -12.56 16 18 C 0.08 4.56 5.32 -21.31 -0.11 4.45 16 19 C -0.55 -29.76 8.95 23.46 0.21 -29.55 16 20 H 0.07 3.91 8.00 -2.91 -0.02 3.89 16 21 C 0.01 0.42 4.83 85.25 0.41 0.83 16 22 N -0.80 -43.03 12.30 21.82 0.27 -42.77 16 23 Si 1.12 42.68 30.02 68.60 2.06 44.74 16 24 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 25 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 27 C -0.26 -12.80 9.71 22.86 0.22 -12.58 16 28 H 0.06 0.91 7.30 -2.39 -0.02 0.90 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.52 7.62 -2.39 -0.02 0.50 16 31 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 0.56 7.62 -2.39 -0.02 0.54 16 33 H 0.10 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.42 8.50 7.10 -92.71 -0.66 7.84 16 38 H 0.42 14.08 8.30 -92.71 -0.77 13.31 16 39 H 0.12 5.26 6.17 -2.91 -0.02 5.24 16 40 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 41 H 0.09 5.05 6.49 -2.91 -0.02 5.03 16 42 H 0.28 15.87 6.98 -92.71 -0.65 15.23 16 43 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -64.75 361.68 -2.26 -67.01 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.25 Total: 42.30 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.75 Total: -18.24 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -9.72 Total: -98.36 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.10 Total: -37.44 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.06 Total: 44.74 kcal Total: -64.75 -2.26 -67.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354533921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.213 kcal (2) G-P(sol) polarization free energy of solvation -64.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds