Wall clock time and date at job start Tue Mar 31 2020 11:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00232 * 2 1 4 4 N 1.34779 * 120.00258 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00304 * 179.97438 * 4 2 1 6 6 H 1.08995 * 110.89071 * 328.87641 * 5 4 2 7 7 C 1.55163 * 111.00600 * 204.99630 * 5 4 2 8 8 C 1.54321 * 102.94181 * 206.42599 * 7 5 4 9 9 N 1.47012 * 107.27638 * 22.19225 * 8 7 5 10 10 C 1.34778 * 125.65504 * 181.02525 * 9 8 7 11 11 O 1.21579 * 120.00388 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99559 * 0.02562 * 10 9 8 13 13 C 1.39243 * 119.99993 * 175.50424 * 12 10 9 14 14 C 1.39480 * 119.83563 * 215.85086 * 13 12 10 15 15 C 1.36373 * 120.17016 * 179.97438 * 14 13 12 16 16 C 1.40867 * 119.82733 * 0.02562 * 15 14 13 17 17 C 1.41157 * 120.16511 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99658 * 335.15835 * 17 16 15 19 19 C 1.39888 * 120.00351 * 155.43705 * 17 16 15 20 20 N 1.30880 * 119.99809 * 344.43429 * 19 17 16 21 21 Si 1.86797 * 120.00191 * 164.43107 * 19 17 16 22 22 H 1.48493 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47233 * 120.00255 * 21 19 17 24 24 H 1.48506 * 109.46948 * 240.00043 * 21 19 17 25 25 C 1.40869 * 119.67507 * 0.25544 * 16 15 14 26 26 C 1.36376 * 119.82464 * 359.48525 * 25 16 15 27 27 C 1.47435 * 108.70336 * 1.28496 * 9 8 7 28 28 H 1.08993 * 109.47067 * 240.00135 * 1 2 3 29 29 H 1.09000 * 109.47178 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47049 * 119.99624 * 1 2 3 31 31 H 0.96998 * 119.99567 * 359.97438 * 4 2 1 32 32 H 1.09000 * 110.71674 * 88.05749 * 7 5 4 33 33 H 1.09000 * 110.87077 * 324.85927 * 7 5 4 34 34 H 1.09001 * 109.88184 * 262.77273 * 8 7 5 35 35 H 1.09000 * 110.01185 * 141.68574 * 8 7 5 36 36 H 0.97003 * 119.99747 * 355.51449 * 12 10 9 37 37 H 1.07998 * 119.91483 * 0.02562 * 14 13 12 38 38 H 1.07996 * 120.08345 * 180.02562 * 15 14 13 39 39 H 0.97006 * 119.99956 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.09162 * 179.74933 * 25 16 15 41 41 H 1.08004 * 119.92036 * 180.25434 * 26 25 16 42 42 H 1.09003 * 110.36066 * 94.48008 * 27 9 8 43 43 H 1.08996 * 110.36715 * 216.80371 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0343 -0.2954 -0.5274 7 6 4.2018 -2.4799 -0.6137 8 6 5.5833 -2.6178 0.0601 9 7 5.5435 -1.8325 1.3023 10 6 6.5644 -1.6814 2.1692 11 8 6.4176 -1.0062 3.1696 12 7 7.7480 -2.2789 1.9272 13 6 8.8302 -2.0479 2.7723 14 6 10.1197 -1.9784 2.2452 15 6 11.1846 -1.7518 3.0666 16 6 10.9795 -1.5884 4.4506 17 6 12.0766 -1.3542 5.3074 18 1 13.0647 -1.6838 5.0219 19 6 11.8832 -0.7003 6.5288 20 7 10.7743 -0.0411 6.7497 21 14 13.2074 -0.7680 7.8445 22 1 14.3547 -1.5714 7.3513 23 1 13.6653 0.6096 8.1574 24 1 12.6547 -1.3964 9.0713 25 6 9.6749 -1.6658 4.9763 26 6 8.6194 -1.8876 4.1417 27 6 4.2000 -1.2426 1.4459 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 4.3074 -2.3866 -1.6945 33 1 3.5636 -3.3268 -0.3616 34 1 6.3582 -2.2282 -0.6001 35 1 5.7837 -3.6643 0.2894 36 1 7.8459 -2.8698 1.1642 37 1 10.2752 -2.1035 1.1838 38 1 12.1823 -1.6979 2.6569 39 1 10.6403 0.4127 7.5966 40 1 9.5105 -1.5456 6.0369 41 1 7.6181 -1.9432 4.5426 42 1 3.5691 -1.8821 2.0634 43 1 4.2682 -0.2444 1.8782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364067974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:57 Heat of formation + Delta-G solvation = -35.417592 kcal Electronic energy + Delta-G solvation = -25538.984222 eV Core-core repulsion = 21776.988337 eV Total energy + Delta-G solvation = -3761.995886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51345 -39.66490 -38.06242 -36.88678 -34.47098 -34.39191 -32.88057 -31.28310 -29.98316 -29.40534 -29.02344 -27.94100 -25.01462 -23.49226 -21.68860 -21.28682 -21.01008 -20.71187 -19.30245 -18.07622 -17.34656 -17.24071 -16.76305 -16.29536 -15.54289 -15.32799 -15.22857 -14.67792 -14.47074 -13.90928 -13.77666 -13.71816 -13.28515 -13.03957 -12.99639 -12.79322 -12.62728 -12.50210 -12.07963 -11.95244 -11.82761 -11.74542 -11.40775 -11.20503 -11.09746 -10.87523 -10.45196 -10.23022 -9.94947 -9.83931 -9.53180 -9.46617 -9.15862 -8.64254 -8.53033 -7.45070 -6.93223 -6.65960 -4.23515 2.29156 2.55168 2.74582 3.07451 3.11498 3.13810 3.17128 3.21815 3.71416 3.98263 4.05222 4.28535 4.46516 4.52818 4.61735 4.71814 4.86818 4.92823 4.98102 5.04035 5.32518 5.36621 5.43037 5.62038 5.72500 5.75669 5.78229 6.03991 6.19518 6.27202 6.46328 6.88379 6.97501 7.11023 7.11658 7.17288 7.36000 7.40723 7.69046 7.87436 7.88785 8.08208 8.12924 8.32886 8.50080 8.70809 8.95322 8.98503 9.16751 10.26332 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002371 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.324145 B =11804.071367 C =12535.349059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.538 6.538 4 N -0.722 5.722 5 C 0.130 3.870 6 H 0.108 0.892 7 C -0.134 4.134 8 C 0.102 3.898 9 N -0.641 5.641 10 C 0.713 3.287 11 O -0.568 6.568 12 N -0.663 5.663 13 C 0.010 3.990 14 C -0.106 4.106 15 C -0.215 4.215 16 C 0.103 3.897 17 C -0.458 4.458 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.791 5.791 21 Si 0.909 3.091 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.272 1.272 25 C -0.156 4.156 26 C -0.086 4.086 27 C 0.118 3.882 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.403 0.597 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.390 0.610 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.280 0.720 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.956 -7.308 -14.539 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.414 6.414 4 N -0.375 5.375 5 C 0.023 3.977 6 H 0.126 0.874 7 C -0.172 4.172 8 C -0.022 4.022 9 N -0.383 5.383 10 C 0.415 3.585 11 O -0.444 6.444 12 N -0.309 5.309 13 C -0.082 4.082 14 C -0.127 4.127 15 C -0.235 4.235 16 C 0.101 3.899 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.145 4.145 20 N -0.416 5.416 21 Si 0.733 3.267 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.198 1.198 25 C -0.176 4.176 26 C -0.106 4.106 27 C -0.007 4.007 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.237 0.763 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.223 0.777 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.675 -5.844 -13.559 23.030 hybrid contribution 0.335 -0.682 0.149 0.775 sum -17.340 -6.527 -13.410 22.871 Atomic orbital electron populations 1.21918 0.91372 1.05747 1.04281 1.20907 0.90728 0.83449 0.75245 1.90780 1.70783 1.31338 1.48545 1.45899 1.06399 1.09026 1.76161 1.22156 0.79880 0.99467 0.96153 0.87377 1.22875 0.96145 0.97231 1.00968 1.21914 0.97537 0.96376 0.86411 1.47457 1.12158 1.54948 1.23719 1.15537 0.79790 0.80531 0.82613 1.90950 1.81580 1.44452 1.27416 1.42057 1.09180 1.48574 1.31084 1.17006 0.84686 1.17173 0.89336 1.20023 0.91878 1.03643 0.97134 1.20525 0.96482 1.12845 0.93658 1.17682 0.93154 0.88147 0.90947 1.19562 0.95544 1.32689 1.01020 0.90441 1.25944 0.96407 0.93082 0.99115 1.69870 1.25137 1.22472 1.24138 0.86258 0.81286 0.78763 0.80362 1.18463 1.20041 1.19769 1.21069 0.91990 1.04911 0.99614 1.20578 0.98662 0.99982 0.91401 1.22356 0.82399 0.99866 0.96053 0.89234 0.88855 0.89376 0.76265 0.89311 0.89922 0.91276 0.91285 0.77728 0.89339 0.88671 0.90908 0.85990 0.87566 0.91731 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.32 36.00 0.37 -0.43 16 2 C 0.51 4.58 7.94 -10.99 -0.09 4.49 16 3 O -0.54 -7.78 16.73 5.55 0.09 -7.69 16 4 N -0.72 -4.88 5.19 -51.62 -0.27 -5.15 16 5 C 0.13 1.17 3.44 -65.66 -0.23 0.94 16 6 H 0.11 1.21 7.54 -51.93 -0.39 0.82 16 7 C -0.13 -0.82 6.59 -24.89 -0.16 -0.98 16 8 C 0.10 0.91 6.15 -3.07 -0.02 0.90 16 9 N -0.64 -9.08 3.32 -176.10 -0.59 -9.67 16 10 C 0.71 13.93 8.32 -86.92 -0.72 13.21 16 11 O -0.57 -13.93 14.05 5.30 0.07 -13.85 16 12 N -0.66 -12.45 5.26 -14.10 -0.07 -12.52 16 13 C 0.01 0.24 6.30 -83.57 -0.53 -0.28 16 14 C -0.11 -2.40 9.90 -39.79 -0.39 -2.80 16 15 C -0.21 -5.34 9.74 -39.26 -0.38 -5.72 16 16 C 0.10 2.84 5.58 -106.80 -0.60 2.25 16 17 C -0.46 -12.43 9.05 -37.86 -0.34 -12.78 16 18 H 0.08 2.00 7.89 -52.48 -0.41 1.59 16 19 C 0.07 1.87 5.18 -17.34 -0.09 1.78 16 20 N -0.79 -21.46 10.83 55.54 0.60 -20.86 16 21 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 22 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.16 -4.31 8.64 -39.26 -0.34 -4.65 16 26 C -0.09 -2.24 8.61 -39.79 -0.34 -2.58 16 27 C 0.12 1.50 6.61 -2.40 -0.02 1.49 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.40 1.33 8.57 -40.82 -0.35 0.98 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.35 8.01 -51.93 -0.42 -0.06 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 5.72 7.81 -40.82 -0.32 5.40 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.28 6.91 8.30 -40.82 -0.34 6.58 16 40 H 0.12 3.50 6.08 -52.49 -0.32 3.18 16 41 H 0.11 2.81 6.26 -52.48 -0.33 2.49 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -36.15 360.23 -9.53 -45.68 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.89 Total: 9.66 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.88 Total: -5.17 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.33 Total: -48.20 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.17 Total: -21.54 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.15 -9.53 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364067974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.266 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds