Wall clock time and date at job start Tue Mar 31 2020 11:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00232 * 2 1 4 4 N 1.34779 * 120.00258 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00304 * 179.97438 * 4 2 1 6 6 H 1.08995 * 110.89071 * 328.87641 * 5 4 2 7 7 C 1.55163 * 111.00600 * 204.99630 * 5 4 2 8 8 C 1.54321 * 102.94181 * 206.42599 * 7 5 4 9 9 N 1.47012 * 107.27638 * 22.19225 * 8 7 5 10 10 C 1.34778 * 125.65504 * 181.02525 * 9 8 7 11 11 O 1.21579 * 120.00388 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99559 * 0.02562 * 10 9 8 13 13 C 1.39243 * 119.99993 * 175.50424 * 12 10 9 14 14 C 1.39480 * 119.83563 * 215.85086 * 13 12 10 15 15 C 1.36373 * 120.17016 * 179.97438 * 14 13 12 16 16 C 1.40867 * 119.82733 * 0.02562 * 15 14 13 17 17 C 1.41157 * 120.16511 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99658 * 335.15835 * 17 16 15 19 19 C 1.39888 * 120.00351 * 155.43705 * 17 16 15 20 20 N 1.30880 * 119.99809 * 344.43429 * 19 17 16 21 21 Si 1.86797 * 120.00191 * 164.43107 * 19 17 16 22 22 H 1.48493 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47233 * 120.00255 * 21 19 17 24 24 H 1.48506 * 109.46948 * 240.00043 * 21 19 17 25 25 C 1.40869 * 119.67507 * 0.25544 * 16 15 14 26 26 C 1.36376 * 119.82464 * 359.48525 * 25 16 15 27 27 C 1.47435 * 108.70336 * 1.28496 * 9 8 7 28 28 H 1.08993 * 109.47067 * 240.00135 * 1 2 3 29 29 H 1.09000 * 109.47178 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47049 * 119.99624 * 1 2 3 31 31 H 0.96998 * 119.99567 * 359.97438 * 4 2 1 32 32 H 1.09000 * 110.71674 * 88.05749 * 7 5 4 33 33 H 1.09000 * 110.87077 * 324.85927 * 7 5 4 34 34 H 1.09001 * 109.88184 * 262.77273 * 8 7 5 35 35 H 1.09000 * 110.01185 * 141.68574 * 8 7 5 36 36 H 0.97003 * 119.99747 * 355.51449 * 12 10 9 37 37 H 1.07998 * 119.91483 * 0.02562 * 14 13 12 38 38 H 1.07996 * 120.08345 * 180.02562 * 15 14 13 39 39 H 0.97006 * 119.99956 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.09162 * 179.74933 * 25 16 15 41 41 H 1.08004 * 119.92036 * 180.25434 * 26 25 16 42 42 H 1.09003 * 110.36066 * 94.48008 * 27 9 8 43 43 H 1.08996 * 110.36715 * 216.80371 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0343 -0.2954 -0.5274 7 6 4.2018 -2.4799 -0.6137 8 6 5.5833 -2.6178 0.0601 9 7 5.5435 -1.8325 1.3023 10 6 6.5644 -1.6814 2.1692 11 8 6.4176 -1.0062 3.1696 12 7 7.7480 -2.2789 1.9272 13 6 8.8302 -2.0479 2.7723 14 6 10.1197 -1.9784 2.2452 15 6 11.1846 -1.7518 3.0666 16 6 10.9795 -1.5884 4.4506 17 6 12.0766 -1.3542 5.3074 18 1 13.0647 -1.6838 5.0219 19 6 11.8832 -0.7003 6.5288 20 7 10.7743 -0.0411 6.7497 21 14 13.2074 -0.7680 7.8445 22 1 14.3547 -1.5714 7.3513 23 1 13.6653 0.6096 8.1574 24 1 12.6547 -1.3964 9.0713 25 6 9.6749 -1.6658 4.9763 26 6 8.6194 -1.8876 4.1417 27 6 4.2000 -1.2426 1.4459 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 4.3074 -2.3866 -1.6945 33 1 3.5636 -3.3268 -0.3616 34 1 6.3582 -2.2282 -0.6001 35 1 5.7837 -3.6643 0.2894 36 1 7.8459 -2.8698 1.1642 37 1 10.2752 -2.1035 1.1838 38 1 12.1823 -1.6979 2.6569 39 1 10.6403 0.4127 7.5966 40 1 9.5105 -1.5456 6.0369 41 1 7.6181 -1.9432 4.5426 42 1 3.5691 -1.8821 2.0634 43 1 4.2682 -0.2444 1.8782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364067974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:56 Heat of formation + Delta-G solvation = -61.993957 kcal Electronic energy + Delta-G solvation = -25540.136660 eV Core-core repulsion = 21776.988337 eV Total energy + Delta-G solvation = -3763.148323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.70915 -40.74014 -39.49950 -38.39218 -36.21690 -35.43308 -34.65875 -32.24789 -31.38230 -30.73928 -30.60223 -28.94536 -26.76930 -24.71217 -23.17872 -22.70508 -22.29560 -21.67117 -20.77323 -19.44633 -19.21403 -18.23008 -17.82867 -17.53459 -17.06948 -16.56828 -16.27718 -16.09670 -15.73761 -15.60626 -14.88725 -14.67719 -14.51121 -14.48186 -14.12227 -13.97937 -13.90797 -13.64180 -13.38237 -13.32757 -13.03227 -12.82882 -12.73563 -12.65977 -12.59115 -12.30680 -11.88015 -11.75116 -11.74573 -11.31614 -11.05510 -11.00568 -10.51971 -10.27519 -9.73675 -9.44803 -8.83717 -8.59241 -6.26904 0.85115 1.14865 1.37619 1.41011 1.49719 1.54776 1.63881 2.12398 2.21491 2.28757 2.77462 3.06692 3.46805 3.53507 3.74962 3.93647 3.99511 4.18000 4.26891 4.43679 4.49084 4.54037 4.57825 4.68575 4.71424 4.76998 4.89999 4.98217 5.03002 5.08832 5.14949 5.17255 5.24510 5.32212 5.43242 5.47473 5.67851 5.80989 6.06651 6.11737 6.17289 6.35202 6.55707 6.69596 6.93398 6.99897 7.02639 7.26799 7.60277 8.35303 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002371 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.324145 B =11804.071367 C =12535.349059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.502 3.498 3 O -0.604 6.604 4 N -0.703 5.703 5 C 0.138 3.862 6 H 0.083 0.917 7 C -0.112 4.112 8 C 0.089 3.911 9 N -0.635 5.635 10 C 0.705 3.295 11 O -0.629 6.629 12 N -0.651 5.651 13 C 0.023 3.977 14 C -0.099 4.099 15 C -0.220 4.220 16 C 0.070 3.930 17 C -0.491 4.491 18 H 0.084 0.916 19 C 0.025 3.975 20 N -0.833 5.833 21 Si 0.989 3.011 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.267 1.267 25 C -0.181 4.181 26 C -0.101 4.101 27 C 0.114 3.886 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.425 0.575 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.414 0.586 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.285 0.715 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.723 -9.691 -17.351 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.291 3.709 3 O -0.485 6.485 4 N -0.357 5.357 5 C 0.030 3.970 6 H 0.101 0.899 7 C -0.150 4.150 8 C -0.033 4.033 9 N -0.374 5.374 10 C 0.408 3.592 11 O -0.510 6.510 12 N -0.299 5.299 13 C -0.071 4.071 14 C -0.119 4.119 15 C -0.240 4.240 16 C 0.068 3.932 17 C -0.521 4.521 18 H 0.102 0.898 19 C -0.188 4.188 20 N -0.460 5.460 21 Si 0.809 3.191 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.192 1.192 25 C -0.201 4.201 26 C -0.122 4.122 27 C -0.011 4.011 28 H 0.130 0.870 29 H 0.101 0.899 30 H 0.138 0.862 31 H 0.264 0.736 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.251 0.749 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.507 -8.324 -16.472 26.137 hybrid contribution 0.404 0.033 0.884 0.972 sum -18.103 -8.291 -15.589 25.288 Atomic orbital electron populations 1.21929 0.87590 1.05985 1.06813 1.21801 0.92571 0.82845 0.73668 1.90760 1.72334 1.33725 1.51642 1.45751 1.05442 1.09674 1.74790 1.21895 0.81170 1.00626 0.93287 0.89901 1.22886 0.94259 0.95947 1.01943 1.22388 1.00023 0.96753 0.84156 1.47387 1.11116 1.54608 1.24272 1.15769 0.80705 0.80110 0.82647 1.90916 1.82765 1.46934 1.30363 1.41757 1.07975 1.49040 1.31104 1.17058 0.86444 1.14835 0.88747 1.20384 0.90597 1.01708 0.99205 1.20826 0.98172 1.12192 0.92857 1.18038 0.93132 0.89366 0.92678 1.19857 0.95754 1.33992 1.02455 0.89822 1.26924 0.98832 0.91957 1.01118 1.69967 1.27444 1.23493 1.25049 0.85069 0.78100 0.79055 0.76891 1.17428 1.19258 1.19201 1.20954 0.93133 1.07189 0.98873 1.20583 0.97456 1.01017 0.93128 1.22484 0.82229 0.97532 0.98874 0.87036 0.89886 0.86172 0.73644 0.86550 0.86814 0.90213 0.88959 0.74853 0.84656 0.86852 0.90409 0.88407 0.89106 0.90528 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.32 71.24 0.74 -0.38 16 2 C 0.50 8.54 7.94 87.66 0.70 9.23 16 3 O -0.60 -18.17 16.73 -3.04 -0.05 -18.22 16 4 N -0.70 -7.86 5.19 -435.60 -2.26 -10.12 16 5 C 0.14 2.25 3.44 46.46 0.16 2.41 16 6 H 0.08 1.85 7.54 -2.39 -0.02 1.83 16 7 C -0.11 -0.86 6.59 31.78 0.21 -0.65 16 8 C 0.09 1.27 6.15 86.73 0.53 1.80 16 9 N -0.63 -17.40 3.32 -829.32 -2.76 -20.16 16 10 C 0.71 27.82 8.32 179.05 1.49 29.31 16 11 O -0.63 -32.53 14.05 -3.97 -0.06 -32.59 16 12 N -0.65 -23.65 5.26 -316.78 -1.67 -25.31 16 13 C 0.02 1.07 6.30 38.56 0.24 1.31 16 14 C -0.10 -4.29 9.90 22.13 0.22 -4.07 16 15 C -0.22 -10.87 9.74 22.48 0.22 -10.65 16 16 C 0.07 4.00 5.58 -21.28 -0.12 3.89 16 17 C -0.49 -27.42 9.05 23.39 0.21 -27.21 16 18 H 0.08 4.39 7.89 -2.91 -0.02 4.36 16 19 C 0.03 1.35 5.18 85.23 0.44 1.79 16 20 N -0.83 -47.49 10.83 21.82 0.24 -47.26 16 21 Si 0.99 40.08 29.59 68.60 2.03 42.11 16 22 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 25 C -0.18 -10.63 8.64 22.48 0.19 -10.44 16 26 C -0.10 -5.53 8.61 22.14 0.19 -5.34 16 27 C 0.11 2.90 6.61 86.93 0.57 3.48 16 28 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.42 1.05 8.57 -92.71 -0.79 0.26 16 32 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 0.26 8.01 -2.39 -0.02 0.24 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.41 10.87 7.81 -92.71 -0.72 10.14 16 37 H 0.14 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 39 H 0.29 14.79 8.30 -92.70 -0.77 14.03 16 40 H 0.10 6.08 6.08 -2.91 -0.02 6.06 16 41 H 0.09 5.16 6.26 -2.91 -0.02 5.14 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.04 1.26 8.03 -2.39 -0.02 1.24 16 Total: -1.00 -88.38 360.23 1.01 -87.38 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.47 Total: 29.67 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 6.00 Total: -5.51 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -6.45 Total: -102.85 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.11 Total: -50.80 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -88.38 1.01 -87.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364067974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.382 kcal (2) G-P(sol) polarization free energy of solvation -88.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds