Wall clock time and date at job start Tue Mar 31 2020 11:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99832 * 2 1 4 4 O 1.21592 * 119.99492 * 180.02562 * 3 2 1 5 5 N 1.34767 * 120.00109 * 359.97438 * 3 2 1 6 6 C 1.39955 * 119.99918 * 184.70349 * 5 3 2 7 7 C 1.39293 * 119.94685 * 213.59660 * 6 5 3 8 8 C 1.38492 * 120.42876 * 180.02562 * 7 6 5 9 9 C 1.37684 * 120.32066 * 0.02562 * 8 7 6 10 10 C 1.40744 * 119.88644 * 359.97438 * 9 8 7 11 11 C 1.41402 * 120.21014 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00064 * 153.53467 * 11 10 9 13 13 C 1.39933 * 119.99902 * 333.52806 * 11 10 9 14 14 N 1.30830 * 120.00053 * 330.00089 * 13 11 10 15 15 Si 1.86800 * 119.99880 * 150.00059 * 13 11 10 16 16 H 1.48496 * 109.47077 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.46913 * 300.00197 * 15 13 11 18 18 H 1.48498 * 109.47198 * 60.00034 * 15 13 11 19 19 C 1.38237 * 119.94932 * 33.82835 * 6 5 3 20 20 C 1.46497 * 119.99874 * 179.97438 * 2 1 3 21 21 H 1.09002 * 110.43308 * 178.90895 * 20 2 1 22 22 C 1.54629 * 110.48835 * 56.22979 * 20 2 1 23 23 C 1.54472 * 101.76513 * 266.11994 * 22 20 2 24 24 N 1.46769 * 105.47435 * 334.58307 * 23 22 20 25 25 C 1.46496 * 124.35180 * 196.99885 * 24 23 22 26 26 C 1.34422 * 111.29795 * 17.01253 * 24 23 22 27 27 O 1.21282 * 124.93811 * 179.55711 * 26 24 23 28 28 H 1.08998 * 109.47313 * 89.99824 * 1 2 3 29 29 H 1.08997 * 109.47058 * 210.00086 * 1 2 3 30 30 H 1.09003 * 109.46754 * 330.00417 * 1 2 3 31 31 H 0.96996 * 120.00463 * 4.69993 * 5 3 2 32 32 H 1.07999 * 119.78699 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.83890 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.05363 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00206 * 353.43022 * 14 13 11 36 36 H 1.08003 * 120.15709 * 0.02562 * 19 6 5 37 37 H 1.09002 * 110.96708 * 24.23728 * 22 20 2 38 38 H 1.08992 * 110.97315 * 147.99697 * 22 20 2 39 39 H 1.08996 * 110.25274 * 215.58250 * 23 22 20 40 40 H 1.09003 * 110.25174 * 93.58270 * 23 22 20 41 41 H 1.08999 * 109.47463 * 179.97438 * 25 24 23 42 42 H 1.09007 * 109.47219 * 299.99753 * 25 24 23 43 43 H 1.09000 * 109.47479 * 59.99018 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1613 3.5443 -0.0999 7 6 1.6852 4.6766 0.5571 8 6 2.3660 5.8791 0.4651 9 6 3.5216 5.9686 -0.2779 10 6 4.0147 4.8329 -0.9473 11 6 5.2006 4.9172 -1.7128 12 1 5.8084 4.0376 -1.8655 13 6 5.5866 6.1402 -2.2725 14 7 4.6791 7.0177 -2.6162 15 14 7.3975 6.5199 -2.5291 16 1 7.5397 7.8694 -3.1322 17 1 8.1004 6.4860 -1.2214 18 1 7.9920 5.5062 -3.4370 19 6 3.3178 3.6151 -0.8538 20 6 2.1975 -1.2687 0.0006 21 1 3.2722 -1.0877 -0.0190 22 6 1.7708 -2.1405 -1.2031 23 6 0.6628 -3.0179 -0.5795 24 7 0.9665 -3.0710 0.8554 25 6 0.4089 -4.0588 1.7824 26 6 1.8219 -2.0965 1.2098 27 8 2.2321 -1.9078 2.3355 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 0.4975 2.3359 0.0679 32 1 0.7789 4.6165 1.1413 33 1 1.9881 6.7511 0.9781 34 1 4.0488 6.9086 -0.3470 35 1 3.7385 6.7852 -2.5725 36 1 3.6855 2.7388 -1.3670 37 1 1.3729 -1.5244 -2.0094 38 1 2.6010 -2.7525 -1.5553 39 1 0.6891 -4.0198 -1.0079 40 1 -0.3145 -2.5632 -0.7416 41 1 0.7959 -3.8756 2.7848 42 1 -0.6779 -3.9758 1.7913 43 1 0.6940 -5.0605 1.4607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364135062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:07 Heat of formation + Delta-G solvation = -22.411119 kcal Electronic energy + Delta-G solvation = -26462.249526 eV Core-core repulsion = 22700.817644 eV Total energy + Delta-G solvation = -3761.431883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22808 -39.74816 -37.54890 -36.74140 -35.26692 -34.67995 -33.19396 -31.94508 -29.65523 -28.39800 -27.91186 -27.17536 -25.86706 -25.01663 -22.65576 -21.41324 -20.98515 -19.92002 -19.29367 -18.58386 -17.74622 -17.20780 -16.74573 -15.92188 -15.73333 -15.40088 -14.87128 -14.59793 -14.21328 -14.03736 -13.89971 -13.77384 -13.54146 -13.20879 -13.16873 -12.92629 -12.80926 -12.67260 -12.52892 -12.12223 -11.79314 -11.70298 -11.60052 -11.47024 -11.02106 -10.50324 -10.36575 -10.34900 -10.27982 -9.68609 -9.52011 -9.11727 -9.08457 -8.85225 -8.69345 -7.59151 -7.18785 -6.95215 -4.34846 2.00629 2.61395 2.66600 2.88109 3.01790 3.22209 3.31310 3.43551 3.55910 3.97752 4.08918 4.16002 4.19209 4.50836 4.60768 4.60969 4.79464 4.92281 5.02345 5.05004 5.15726 5.33528 5.35599 5.37825 5.55264 5.57306 5.61937 6.11236 6.15294 6.24703 6.36211 6.64153 6.68138 6.72483 6.92901 7.00403 7.16616 7.53071 7.69515 7.78091 7.87374 7.89620 7.95691 8.22837 8.29139 8.39111 8.85864 8.87673 8.98580 10.09991 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002986 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.642093 B = 9373.892933 C = 9975.573983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.619 5.619 3 C 0.705 3.295 4 O -0.555 6.555 5 N -0.677 5.677 6 C 0.180 3.820 7 C -0.277 4.277 8 C -0.070 4.070 9 C -0.229 4.229 10 C 0.110 3.890 11 C -0.524 4.524 12 H 0.077 0.923 13 C 0.044 3.956 14 N -0.792 5.792 15 Si 1.061 2.939 16 H -0.275 1.275 17 H -0.274 1.274 18 H -0.276 1.276 19 C -0.213 4.213 20 C 0.131 3.869 21 H 0.137 0.863 22 C -0.145 4.145 23 C 0.101 3.899 24 N -0.626 5.626 25 C 0.093 3.907 26 C 0.509 3.491 27 O -0.513 6.513 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.297 0.703 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 -18.632 0.670 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.359 5.359 3 C 0.407 3.593 4 O -0.430 6.430 5 N -0.325 5.325 6 C 0.087 3.913 7 C -0.299 4.299 8 C -0.089 4.089 9 C -0.249 4.249 10 C 0.107 3.893 11 C -0.552 4.552 12 H 0.095 0.905 13 C -0.178 4.178 14 N -0.414 5.414 15 Si 0.885 3.115 16 H -0.200 1.200 17 H -0.199 1.199 18 H -0.201 1.201 19 C -0.235 4.235 20 C 0.022 3.978 21 H 0.155 0.845 22 C -0.184 4.184 23 C -0.022 4.022 24 N -0.362 5.362 25 C -0.048 4.048 26 C 0.294 3.706 27 O -0.386 6.386 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.079 -17.382 0.812 20.109 hybrid contribution -1.948 -1.403 0.645 2.486 sum -12.027 -18.785 1.457 22.353 Atomic orbital electron populations 1.21806 0.79976 1.03045 1.01944 1.46733 1.05934 1.03682 1.79552 1.15812 0.85456 0.80058 0.77976 1.90987 1.11095 1.85231 1.55654 1.42701 1.09444 1.03942 1.76370 1.17288 0.94365 0.82539 0.97082 1.19931 1.04935 0.93610 1.11411 1.20353 0.95279 0.95315 0.97929 1.21102 0.99531 0.99468 1.04780 1.17511 0.91100 0.90547 0.90163 1.20511 1.06653 0.98184 1.29869 0.90538 1.26979 1.07153 0.91968 0.91739 1.70450 1.05227 1.36937 1.28823 0.83705 0.72924 0.77010 0.77860 1.19974 1.19932 1.20136 1.20971 0.97417 0.99206 1.05917 1.21490 1.00840 0.82775 0.92651 0.84505 1.23019 0.99331 0.98216 0.97834 1.22170 0.98941 1.01267 0.79836 1.48217 1.46422 1.31731 1.09831 1.21563 0.98423 0.90885 0.93967 1.21274 0.78260 0.80885 0.90204 1.90747 1.54866 1.70258 1.22714 0.91978 0.91156 0.91180 0.76967 0.89228 0.88890 0.87939 0.88975 0.87340 0.88158 0.88536 0.89997 0.90852 0.89930 0.92040 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 8.93 59.85 0.53 1.24 16 2 N -0.62 -8.62 2.81 -179.69 -0.51 -9.12 16 3 C 0.71 13.50 8.02 -86.92 -0.70 12.81 16 4 O -0.56 -13.24 13.39 5.28 0.07 -13.17 16 5 N -0.68 -12.65 5.22 -14.27 -0.07 -12.72 16 6 C 0.18 4.18 6.27 -83.76 -0.52 3.65 16 7 C -0.28 -6.23 9.97 -39.10 -0.39 -6.61 16 8 C -0.07 -1.64 10.02 -39.69 -0.40 -2.04 16 9 C -0.23 -6.05 8.15 -38.84 -0.32 -6.36 16 10 C 0.11 3.07 5.24 -106.85 -0.56 2.51 16 11 C -0.52 -14.68 8.93 -37.74 -0.34 -15.01 16 12 H 0.08 2.15 8.00 -52.49 -0.42 1.73 16 13 C 0.04 1.15 4.80 -17.34 -0.08 1.07 16 14 N -0.79 -21.36 12.41 55.55 0.69 -20.67 16 15 Si 1.06 22.39 30.02 -169.99 -5.10 17.29 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 19 C -0.21 -5.66 8.39 -38.69 -0.32 -5.99 16 20 C 0.13 1.67 3.43 -67.94 -0.23 1.44 16 21 H 0.14 2.11 6.97 -51.93 -0.36 1.74 16 22 C -0.15 -1.12 6.48 -25.10 -0.16 -1.28 16 23 C 0.10 0.59 6.44 -3.12 -0.02 0.57 16 24 N -0.63 -5.61 3.04 -180.29 -0.55 -6.16 16 25 C 0.09 0.63 11.14 59.84 0.67 1.30 16 26 C 0.51 6.81 6.77 -10.86 -0.07 6.74 16 27 O -0.51 -9.27 17.35 5.56 0.10 -9.17 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.58 5.79 -51.93 -0.30 0.28 16 30 H 0.07 0.63 6.30 -51.93 -0.33 0.30 16 31 H 0.39 5.76 6.51 -40.82 -0.27 5.49 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.10 2.76 6.76 -52.48 -0.35 2.41 16 35 H 0.30 8.21 7.18 -40.82 -0.29 7.91 16 36 H 0.11 2.99 6.42 -52.48 -0.34 2.65 16 37 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.34 7.07 -51.93 -0.37 -0.03 16 41 H 0.08 0.70 7.53 -51.93 -0.39 0.31 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -35.67 351.96 -8.58 -44.25 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.59 Total: 10.14 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.92 Total: -5.96 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.44 Total: -48.68 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.10 Total: 17.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.67 -8.58 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364135062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.842 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds