Wall clock time and date at job start Tue Mar 31 2020 11:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99832 * 2 1 4 4 O 1.21592 * 119.99492 * 180.02562 * 3 2 1 5 5 N 1.34767 * 120.00109 * 359.97438 * 3 2 1 6 6 C 1.39955 * 119.99918 * 184.70349 * 5 3 2 7 7 C 1.39293 * 119.94685 * 213.59660 * 6 5 3 8 8 C 1.38492 * 120.42876 * 180.02562 * 7 6 5 9 9 C 1.37684 * 120.32066 * 0.02562 * 8 7 6 10 10 C 1.40744 * 119.88644 * 359.97438 * 9 8 7 11 11 C 1.41402 * 120.21014 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00064 * 153.53467 * 11 10 9 13 13 C 1.39933 * 119.99902 * 333.52806 * 11 10 9 14 14 N 1.30830 * 120.00053 * 330.00089 * 13 11 10 15 15 Si 1.86800 * 119.99880 * 150.00059 * 13 11 10 16 16 H 1.48496 * 109.47077 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.46913 * 300.00197 * 15 13 11 18 18 H 1.48498 * 109.47198 * 60.00034 * 15 13 11 19 19 C 1.38237 * 119.94932 * 33.82835 * 6 5 3 20 20 C 1.46497 * 119.99874 * 179.97438 * 2 1 3 21 21 H 1.09002 * 110.43308 * 178.90895 * 20 2 1 22 22 C 1.54629 * 110.48835 * 56.22979 * 20 2 1 23 23 C 1.54472 * 101.76513 * 266.11994 * 22 20 2 24 24 N 1.46769 * 105.47435 * 334.58307 * 23 22 20 25 25 C 1.46496 * 124.35180 * 196.99885 * 24 23 22 26 26 C 1.34422 * 111.29795 * 17.01253 * 24 23 22 27 27 O 1.21282 * 124.93811 * 179.55711 * 26 24 23 28 28 H 1.08998 * 109.47313 * 89.99824 * 1 2 3 29 29 H 1.08997 * 109.47058 * 210.00086 * 1 2 3 30 30 H 1.09003 * 109.46754 * 330.00417 * 1 2 3 31 31 H 0.96996 * 120.00463 * 4.69993 * 5 3 2 32 32 H 1.07999 * 119.78699 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.83890 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.05363 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00206 * 353.43022 * 14 13 11 36 36 H 1.08003 * 120.15709 * 0.02562 * 19 6 5 37 37 H 1.09002 * 110.96708 * 24.23728 * 22 20 2 38 38 H 1.08992 * 110.97315 * 147.99697 * 22 20 2 39 39 H 1.08996 * 110.25274 * 215.58250 * 23 22 20 40 40 H 1.09003 * 110.25174 * 93.58270 * 23 22 20 41 41 H 1.08999 * 109.47463 * 179.97438 * 25 24 23 42 42 H 1.09007 * 109.47219 * 299.99753 * 25 24 23 43 43 H 1.09000 * 109.47479 * 59.99018 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1613 3.5443 -0.0999 7 6 1.6852 4.6766 0.5571 8 6 2.3660 5.8791 0.4651 9 6 3.5216 5.9686 -0.2779 10 6 4.0147 4.8329 -0.9473 11 6 5.2006 4.9172 -1.7128 12 1 5.8084 4.0376 -1.8655 13 6 5.5866 6.1402 -2.2725 14 7 4.6791 7.0177 -2.6162 15 14 7.3975 6.5199 -2.5291 16 1 7.5397 7.8694 -3.1322 17 1 8.1004 6.4860 -1.2214 18 1 7.9920 5.5062 -3.4370 19 6 3.3178 3.6151 -0.8538 20 6 2.1975 -1.2687 0.0006 21 1 3.2722 -1.0877 -0.0190 22 6 1.7708 -2.1405 -1.2031 23 6 0.6628 -3.0179 -0.5795 24 7 0.9665 -3.0710 0.8554 25 6 0.4089 -4.0588 1.7824 26 6 1.8219 -2.0965 1.2098 27 8 2.2321 -1.9078 2.3355 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 0.4975 2.3359 0.0679 32 1 0.7789 4.6165 1.1413 33 1 1.9881 6.7511 0.9781 34 1 4.0488 6.9086 -0.3470 35 1 3.7385 6.7852 -2.5725 36 1 3.6855 2.7388 -1.3670 37 1 1.3729 -1.5244 -2.0094 38 1 2.6010 -2.7525 -1.5553 39 1 0.6891 -4.0198 -1.0079 40 1 -0.3145 -2.5632 -0.7416 41 1 0.7959 -3.8756 2.7848 42 1 -0.6779 -3.9758 1.7913 43 1 0.6940 -5.0605 1.4607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364135062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:06 Heat of formation + Delta-G solvation = -47.178050 kcal Electronic energy + Delta-G solvation = -26463.323501 eV Core-core repulsion = 22700.817644 eV Total energy + Delta-G solvation = -3762.505857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31330 -41.12844 -39.33711 -37.84015 -36.51316 -36.40087 -34.94675 -32.85775 -31.64189 -29.91735 -28.97375 -27.91398 -27.07261 -26.81217 -23.88093 -23.00561 -22.55778 -21.29125 -20.40069 -20.22788 -19.34244 -18.27949 -17.66367 -17.37452 -17.04491 -16.68483 -16.36022 -16.05067 -15.85080 -15.59911 -14.99167 -14.88346 -14.71981 -14.61236 -14.28331 -14.00982 -13.89604 -13.78316 -13.60037 -13.50561 -13.36240 -13.19441 -12.78108 -12.43679 -12.35592 -12.33789 -12.10853 -11.94188 -11.58597 -11.44598 -11.26625 -10.92973 -10.82345 -9.87361 -9.78412 -9.61211 -9.23364 -8.82259 -6.46317 0.75726 0.91529 0.94570 1.48940 1.60256 1.70534 1.80091 1.91691 2.07172 2.32169 2.64971 2.81676 3.21508 3.40072 3.54097 3.81400 3.97952 4.04569 4.33057 4.34671 4.42142 4.45487 4.54337 4.60157 4.63166 4.72733 4.78421 4.85916 4.92845 4.93837 4.96146 5.01923 5.05080 5.29252 5.46375 5.51190 5.55627 5.76791 5.81438 5.87650 5.90036 5.94335 6.27382 6.38322 6.77991 6.82532 6.91332 6.95660 7.39908 8.01019 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002986 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.642093 B = 9373.892933 C = 9975.573983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.608 5.608 3 C 0.697 3.303 4 O -0.613 6.613 5 N -0.665 5.665 6 C 0.187 3.813 7 C -0.262 4.262 8 C -0.068 4.068 9 C -0.249 4.249 10 C 0.083 3.917 11 C -0.567 4.567 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.805 5.805 15 Si 1.112 2.888 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.261 1.261 19 C -0.240 4.240 20 C 0.118 3.882 21 H 0.096 0.904 22 C -0.133 4.133 23 C 0.102 3.898 24 N -0.611 5.611 25 C 0.087 3.913 26 C 0.502 3.498 27 O -0.575 6.575 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.418 0.582 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.283 0.717 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 -20.222 0.400 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.346 5.346 3 C 0.399 3.601 4 O -0.492 6.492 5 N -0.315 5.315 6 C 0.093 3.907 7 C -0.283 4.283 8 C -0.086 4.086 9 C -0.269 4.269 10 C 0.080 3.920 11 C -0.595 4.595 12 H 0.075 0.925 13 C -0.205 4.205 14 N -0.426 5.426 15 Si 0.929 3.071 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.185 1.185 19 C -0.262 4.262 20 C 0.010 3.990 21 H 0.114 0.886 22 C -0.172 4.172 23 C -0.020 4.020 24 N -0.345 5.345 25 C -0.053 4.053 26 C 0.288 3.712 27 O -0.454 6.454 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.258 0.742 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.415 -19.066 0.508 23.318 hybrid contribution -1.178 -1.113 0.815 1.814 sum -14.593 -20.179 1.323 24.938 Atomic orbital electron populations 1.22190 0.76600 1.04264 1.04468 1.46730 1.07855 1.02272 1.77762 1.16092 0.84972 0.81337 0.77668 1.90957 1.13952 1.86266 1.58026 1.42445 1.10364 1.02562 1.76120 1.17369 0.93336 0.84591 0.95441 1.20409 1.05626 0.92431 1.09865 1.20765 0.93984 0.97149 0.96727 1.21087 1.01122 0.98437 1.06232 1.17825 0.91622 0.91721 0.90797 1.20631 1.07831 0.98686 1.32379 0.92465 1.28341 1.10703 0.91139 0.90271 1.70560 1.04633 1.37146 1.30300 0.83085 0.67893 0.77693 0.78398 1.18669 1.19312 1.18502 1.20915 0.99333 0.98105 1.07836 1.21642 0.98952 0.83010 0.95396 0.88576 1.23036 1.00610 0.97651 0.95860 1.22489 0.99041 1.03040 0.77385 1.48341 1.44252 1.30242 1.11624 1.21796 0.99848 0.91276 0.92409 1.21329 0.78810 0.81883 0.89221 1.90707 1.57487 1.72280 1.24923 0.88653 0.89433 0.90570 0.74243 0.84830 0.85309 0.89291 0.90542 0.89764 0.87012 0.87369 0.86489 0.88119 0.92400 0.89183 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 8.93 127.77 1.14 2.15 16 2 N -0.61 -16.47 2.81 -840.66 -2.37 -18.84 16 3 C 0.70 27.22 8.02 179.06 1.44 28.66 16 4 O -0.61 -31.20 13.39 -4.01 -0.05 -31.25 16 5 N -0.67 -24.27 5.22 -317.32 -1.66 -25.92 16 6 C 0.19 8.68 6.27 38.10 0.24 8.91 16 7 C -0.26 -11.17 9.97 22.58 0.23 -10.94 16 8 C -0.07 -3.09 10.02 22.20 0.22 -2.87 16 9 C -0.25 -13.48 8.15 22.75 0.19 -13.30 16 10 C 0.08 4.90 5.24 -21.31 -0.11 4.79 16 11 C -0.57 -33.83 8.93 23.46 0.21 -33.62 16 12 H 0.06 3.49 8.00 -2.91 -0.02 3.47 16 13 C 0.01 0.70 4.80 85.25 0.41 1.11 16 14 N -0.80 -44.92 12.41 21.82 0.27 -44.65 16 15 Si 1.11 46.31 30.02 68.60 2.06 48.37 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 19 C -0.24 -13.38 8.39 22.85 0.19 -13.18 16 20 C 0.12 3.04 3.43 44.98 0.15 3.19 16 21 H 0.10 3.25 6.97 -2.39 -0.02 3.24 16 22 C -0.13 -1.71 6.48 31.65 0.20 -1.51 16 23 C 0.10 0.72 6.44 86.83 0.56 1.28 16 24 N -0.61 -9.26 3.04 -842.90 -2.56 -11.82 16 25 C 0.09 0.92 11.14 127.77 1.42 2.34 16 26 C 0.50 13.36 6.77 87.90 0.60 13.95 16 27 O -0.58 -21.78 17.35 -3.03 -0.05 -21.83 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.08 5.79 -2.39 -0.01 1.06 16 30 H 0.08 1.10 6.30 -2.39 -0.02 1.08 16 31 H 0.42 11.04 6.51 -92.71 -0.60 10.43 16 32 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 34 H 0.09 4.97 6.76 -2.91 -0.02 4.95 16 35 H 0.28 16.35 7.18 -92.71 -0.67 15.68 16 36 H 0.08 5.02 6.42 -2.91 -0.02 5.00 16 37 H 0.11 1.24 8.08 -2.39 -0.02 1.23 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.10 0.29 7.07 -2.39 -0.02 0.27 16 41 H 0.06 0.94 7.53 -2.39 -0.02 0.92 16 42 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -87.44 351.96 3.27 -84.17 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.55 Total: 30.80 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 7.08 Total: -9.03 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -6.32 Total: -101.23 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.11 Total: -53.09 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.06 Total: 48.37 kcal Total: -87.44 3.27 -84.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364135062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.996 kcal (2) G-P(sol) polarization free energy of solvation -87.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds