Wall clock time and date at job start Tue Mar 31 2020 11:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99761 * 2 1 4 4 C 1.53003 * 109.46969 * 150.00137 * 3 2 1 5 5 C 1.53002 * 109.46883 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47492 * 299.99787 * 5 4 3 7 7 N 1.46493 * 109.47330 * 180.02562 * 6 5 4 8 8 S 1.65600 * 120.00074 * 145.00242 * 7 6 5 9 9 O 1.42099 * 104.27709 * 308.92593 * 8 7 6 10 10 O 1.42101 * 104.27857 * 181.06751 * 8 7 6 11 11 C 1.81401 * 104.44998 * 64.99863 * 8 7 6 12 12 C 1.53004 * 109.47176 * 172.68899 * 11 8 7 13 13 C 1.50710 * 115.54574 * 65.16165 * 12 11 8 14 14 H 1.07999 * 119.99893 * 264.89939 * 13 12 11 15 15 C 1.37872 * 120.00074 * 84.90205 * 13 12 11 16 16 N 1.31518 * 119.99883 * 352.82919 * 15 13 12 17 17 Si 1.86800 * 120.00016 * 172.82397 * 15 13 12 18 18 H 1.48497 * 109.46936 * 90.00107 * 17 15 13 19 19 H 1.48501 * 109.47112 * 210.00037 * 17 15 13 20 20 H 1.48495 * 109.47166 * 330.00006 * 17 15 13 21 21 C 1.52995 * 117.50372 * 279.49142 * 12 11 8 22 22 C 1.52998 * 117.50001 * 210.82593 * 12 11 8 23 23 C 1.53004 * 109.46854 * 59.99820 * 6 5 4 24 24 C 1.52994 * 109.47645 * 300.00431 * 23 6 5 25 25 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47183 * 299.99541 * 1 2 3 27 27 H 1.09001 * 109.47369 * 59.99842 * 1 2 3 28 28 H 1.08997 * 109.47390 * 29.99935 * 3 2 1 29 29 H 1.09003 * 109.47279 * 60.00124 * 4 3 2 30 30 H 1.09002 * 109.47190 * 299.99691 * 4 3 2 31 31 H 1.09003 * 109.46870 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47118 * 60.00543 * 5 4 3 33 33 H 1.09001 * 109.47556 * 300.00488 * 6 5 4 34 34 H 0.97005 * 120.00289 * 324.99935 * 7 6 5 35 35 H 1.08994 * 109.46958 * 292.69112 * 11 8 7 36 36 H 1.08998 * 109.47192 * 52.69426 * 11 8 7 37 37 H 0.97004 * 119.99681 * 185.05317 * 16 15 13 38 38 H 1.09008 * 117.49385 * 0.02562 * 21 12 11 39 39 H 1.09001 * 117.50057 * 145.01662 * 21 12 11 40 40 H 1.08996 * 117.49743 * 214.98020 * 22 12 11 41 41 H 1.09000 * 117.49918 * 359.97438 * 22 12 11 42 42 H 1.08997 * 109.46923 * 60.00623 * 23 6 5 43 43 H 1.09003 * 109.47080 * 179.97438 * 23 6 5 44 44 H 1.09003 * 109.46745 * 299.99906 * 24 23 6 45 45 H 1.08994 * 109.47429 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3589 1.2633 0.7212 5 6 3.9814 2.6609 0.7207 6 6 4.1889 3.1263 -0.7219 7 7 4.7855 4.4642 -0.7224 8 16 5.8738 4.8851 -1.8975 9 8 6.8271 3.8314 -1.8859 10 8 6.2484 6.2156 -1.5679 11 6 4.9127 4.8569 -3.4357 12 6 5.7659 5.4072 -4.5804 13 6 6.9762 4.5852 -4.9421 14 1 7.9397 4.8277 -4.5188 15 6 6.8534 3.5237 -5.8133 16 7 5.6625 3.1400 -6.2184 17 14 8.3784 2.6307 -6.4183 18 1 8.6973 1.5134 -5.4935 19 1 8.1289 2.0911 -7.7791 20 1 9.5214 3.5776 -6.4632 21 6 5.8803 6.9274 -4.7087 22 6 5.0416 6.1351 -5.7146 23 6 2.8402 3.1684 -1.4432 24 6 2.2176 1.7708 -1.4427 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.3449 1.9994 0.5138 29 1 4.0242 0.5694 0.2074 30 1 3.2111 0.9314 1.7489 31 1 4.9420 2.6309 1.2349 32 1 3.3163 3.3551 1.2343 33 1 4.8540 2.4321 -1.2356 34 1 4.5431 5.1037 -0.0345 35 1 4.6188 3.8320 -3.6617 36 1 4.0212 5.4731 -3.3184 37 1 5.5702 2.3489 -6.7722 38 1 5.3481 7.5357 -3.9772 39 1 6.8309 7.3332 -5.0550 40 1 5.4408 6.0198 -6.7223 41 1 3.9572 6.2216 -5.6456 42 1 2.1751 3.8626 -0.9297 43 1 2.9880 3.5004 -2.4709 44 1 2.8828 1.0766 -1.9563 45 1 1.2566 1.8010 -1.9561 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365417089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:00 Heat of formation + Delta-G solvation = -113.716351 kcal Electronic energy + Delta-G solvation = -26140.142105 eV Core-core repulsion = 22477.902130 eV Total energy + Delta-G solvation = -3662.239974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.47063 -37.12822 -36.75927 -36.18522 -35.07135 -33.33839 -32.03960 -30.96558 -28.44618 -28.15777 -26.32299 -25.46282 -22.79766 -22.07765 -21.21158 -20.27090 -19.65321 -18.59626 -17.03468 -16.79305 -16.54511 -16.16053 -15.43701 -15.27936 -15.09556 -14.72607 -14.41069 -14.15603 -13.83613 -13.66097 -13.32465 -13.12409 -12.65641 -12.49443 -12.30570 -11.94820 -11.82005 -11.53574 -11.46199 -11.27524 -11.22939 -11.17428 -11.02310 -10.98293 -10.93201 -10.60922 -10.56425 -10.49932 -10.43743 -10.10553 -9.73310 -9.61477 -9.15438 -8.95741 -8.55682 -8.09527 -6.13903 -4.24513 1.08695 3.31395 3.37096 3.39548 3.42072 3.62682 4.37757 4.50497 4.57644 4.61582 4.92613 4.95403 5.03020 5.05645 5.15127 5.15540 5.18952 5.20761 5.22431 5.32303 5.38464 5.40523 5.47140 5.68562 5.74404 5.84133 5.93230 5.97089 6.01539 6.07465 6.09164 6.23384 6.28595 6.36216 6.43828 6.61214 6.72308 6.98485 7.06422 7.23075 7.30922 7.39360 7.80454 8.20480 8.80928 9.46882 10.93679 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.004445 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.477013 B = 6297.882848 C = 7016.728944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.088 3.912 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.146 3.854 7 N -1.129 6.129 8 S 2.605 3.395 9 O -0.951 6.951 10 O -0.975 6.975 11 C -0.554 4.554 12 C 0.044 3.956 13 C -0.517 4.517 14 H 0.068 0.932 15 C 0.083 3.917 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.208 4.208 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.140 4.140 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.263 0.737 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 -2.447 12.198 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.156 4.156 6 C 0.038 3.962 7 N -0.883 5.883 8 S 2.702 3.298 9 O -0.941 6.941 10 O -0.966 6.966 11 C -0.687 4.687 12 C 0.041 3.959 13 C -0.554 4.554 14 H 0.086 0.914 15 C -0.122 4.122 16 N -0.510 5.510 17 Si 0.717 3.283 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.245 4.245 22 C -0.180 4.180 23 C -0.182 4.182 24 C -0.178 4.178 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.470 -2.655 12.071 16.198 hybrid contribution -0.447 -0.183 -0.496 0.692 sum -10.917 -2.838 11.575 16.162 Atomic orbital electron populations 1.22763 0.81412 1.02536 0.99841 1.87915 1.19363 1.28102 1.95081 1.22228 0.94838 0.84137 0.95750 1.21569 0.95412 0.97423 1.00955 1.21741 1.01717 0.96028 0.96126 1.20828 0.94453 0.83769 0.97105 1.56051 1.65088 1.21449 1.45726 1.05179 0.74938 0.73853 0.75795 1.93537 1.57399 1.57070 1.86049 1.93502 1.81510 1.38410 1.83149 1.30068 1.10841 1.10551 1.17271 1.18276 0.95911 0.88742 0.92949 1.20522 0.92756 1.14174 1.27907 0.91413 1.24939 0.96108 0.96433 0.94734 1.69976 1.22028 1.23801 1.35166 0.86593 0.83377 0.80256 0.78057 1.20000 1.21075 1.19430 1.23192 1.01853 0.95749 1.03729 1.22545 0.95563 1.04098 0.95786 1.22172 0.96793 0.96913 1.02313 1.21992 1.01807 0.97099 0.96910 0.89839 0.94275 0.94025 0.92204 0.90411 0.91005 0.90343 0.91366 0.88476 0.75957 0.84763 0.88261 0.92739 0.90729 0.89549 0.89589 0.91581 0.91300 0.90133 0.90312 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.39 -4.38 10.35 -35.23 -0.36 -4.75 16 3 C 0.09 0.91 2.61 -26.73 -0.07 0.84 16 4 C -0.12 -1.18 5.57 -26.73 -0.15 -1.33 16 5 C -0.12 -1.23 5.45 -26.73 -0.15 -1.37 16 6 C 0.15 1.93 2.69 -67.93 -0.18 1.74 16 7 N -1.13 -16.29 5.36 -4.90 -0.03 -16.32 16 8 S 2.61 52.13 5.16 -107.50 -0.55 51.58 16 9 O -0.95 -22.59 17.12 -57.54 -0.98 -23.58 16 10 O -0.98 -21.37 18.08 -57.54 -1.04 -22.41 16 11 C -0.55 -11.39 4.82 37.16 0.18 -11.21 16 12 C 0.04 1.05 1.33 -155.66 -0.21 0.84 16 13 C -0.52 -14.08 8.23 -34.44 -0.28 -14.36 16 14 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 15 C 0.08 2.25 5.38 -17.82 -0.10 2.15 16 16 N -0.87 -23.81 12.96 55.43 0.72 -23.10 16 17 Si 0.89 21.36 29.55 -169.99 -5.02 16.34 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.21 -4.56 9.96 -26.69 -0.27 -4.82 16 22 C -0.14 -3.18 9.47 -26.69 -0.25 -3.43 16 23 C -0.14 -1.69 5.49 -26.73 -0.15 -1.84 16 24 C -0.14 -1.59 5.54 -26.73 -0.15 -1.73 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 27 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 28 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.47 7.48 -51.93 -0.39 1.09 16 34 H 0.41 4.82 8.80 -34.47 -0.30 4.52 16 35 H 0.13 2.85 7.26 -51.93 -0.38 2.47 16 36 H 0.10 1.71 8.09 -51.93 -0.42 1.29 16 37 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 38 H 0.07 1.49 8.14 -51.92 -0.42 1.06 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 40 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.06 6.02 -51.93 -0.31 0.75 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -32.67 372.21 -9.98 -42.65 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.64 Total: 7.14 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -0.67 Total: -33.17 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.69 Total: -39.41 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -2.39 Total: -50.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 52.13 SS G_CDS: -0.55 Total: 51.58 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.67 -9.98 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365417089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.065 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds