Wall clock time and date at job start Tue Mar 31 2020 11:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99761 * 2 1 4 4 C 1.53003 * 109.46969 * 150.00137 * 3 2 1 5 5 C 1.53002 * 109.46883 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47492 * 299.99787 * 5 4 3 7 7 N 1.46493 * 109.47330 * 180.02562 * 6 5 4 8 8 S 1.65600 * 120.00074 * 145.00242 * 7 6 5 9 9 O 1.42099 * 104.27709 * 308.92593 * 8 7 6 10 10 O 1.42101 * 104.27857 * 181.06751 * 8 7 6 11 11 C 1.81401 * 104.44998 * 64.99863 * 8 7 6 12 12 C 1.53004 * 109.47176 * 172.68899 * 11 8 7 13 13 C 1.50710 * 115.54574 * 65.16165 * 12 11 8 14 14 H 1.07999 * 119.99893 * 264.89939 * 13 12 11 15 15 C 1.37872 * 120.00074 * 84.90205 * 13 12 11 16 16 N 1.31518 * 119.99883 * 352.82919 * 15 13 12 17 17 Si 1.86800 * 120.00016 * 172.82397 * 15 13 12 18 18 H 1.48497 * 109.46936 * 90.00107 * 17 15 13 19 19 H 1.48501 * 109.47112 * 210.00037 * 17 15 13 20 20 H 1.48495 * 109.47166 * 330.00006 * 17 15 13 21 21 C 1.52995 * 117.50372 * 279.49142 * 12 11 8 22 22 C 1.52998 * 117.50001 * 210.82593 * 12 11 8 23 23 C 1.53004 * 109.46854 * 59.99820 * 6 5 4 24 24 C 1.52994 * 109.47645 * 300.00431 * 23 6 5 25 25 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47183 * 299.99541 * 1 2 3 27 27 H 1.09001 * 109.47369 * 59.99842 * 1 2 3 28 28 H 1.08997 * 109.47390 * 29.99935 * 3 2 1 29 29 H 1.09003 * 109.47279 * 60.00124 * 4 3 2 30 30 H 1.09002 * 109.47190 * 299.99691 * 4 3 2 31 31 H 1.09003 * 109.46870 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47118 * 60.00543 * 5 4 3 33 33 H 1.09001 * 109.47556 * 300.00488 * 6 5 4 34 34 H 0.97005 * 120.00289 * 324.99935 * 7 6 5 35 35 H 1.08994 * 109.46958 * 292.69112 * 11 8 7 36 36 H 1.08998 * 109.47192 * 52.69426 * 11 8 7 37 37 H 0.97004 * 119.99681 * 185.05317 * 16 15 13 38 38 H 1.09008 * 117.49385 * 0.02562 * 21 12 11 39 39 H 1.09001 * 117.50057 * 145.01662 * 21 12 11 40 40 H 1.08996 * 117.49743 * 214.98020 * 22 12 11 41 41 H 1.09000 * 117.49918 * 359.97438 * 22 12 11 42 42 H 1.08997 * 109.46923 * 60.00623 * 23 6 5 43 43 H 1.09003 * 109.47080 * 179.97438 * 23 6 5 44 44 H 1.09003 * 109.46745 * 299.99906 * 24 23 6 45 45 H 1.08994 * 109.47429 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3589 1.2633 0.7212 5 6 3.9814 2.6609 0.7207 6 6 4.1889 3.1263 -0.7219 7 7 4.7855 4.4642 -0.7224 8 16 5.8738 4.8851 -1.8975 9 8 6.8271 3.8314 -1.8859 10 8 6.2484 6.2156 -1.5679 11 6 4.9127 4.8569 -3.4357 12 6 5.7659 5.4072 -4.5804 13 6 6.9762 4.5852 -4.9421 14 1 7.9397 4.8277 -4.5188 15 6 6.8534 3.5237 -5.8133 16 7 5.6625 3.1400 -6.2184 17 14 8.3784 2.6307 -6.4183 18 1 8.6973 1.5134 -5.4935 19 1 8.1289 2.0911 -7.7791 20 1 9.5214 3.5776 -6.4632 21 6 5.8803 6.9274 -4.7087 22 6 5.0416 6.1351 -5.7146 23 6 2.8402 3.1684 -1.4432 24 6 2.2176 1.7708 -1.4427 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.3449 1.9994 0.5138 29 1 4.0242 0.5694 0.2074 30 1 3.2111 0.9314 1.7489 31 1 4.9420 2.6309 1.2349 32 1 3.3163 3.3551 1.2343 33 1 4.8540 2.4321 -1.2356 34 1 4.5431 5.1037 -0.0345 35 1 4.6188 3.8320 -3.6617 36 1 4.0212 5.4731 -3.3184 37 1 5.5702 2.3489 -6.7722 38 1 5.3481 7.5357 -3.9772 39 1 6.8309 7.3332 -5.0550 40 1 5.4408 6.0198 -6.7223 41 1 3.9572 6.2216 -5.6456 42 1 2.1751 3.8626 -0.9297 43 1 2.9880 3.5004 -2.4709 44 1 2.8828 1.0766 -1.9563 45 1 1.2566 1.8010 -1.9561 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365417089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:59 Heat of formation + Delta-G solvation = -136.690595 kcal Electronic energy + Delta-G solvation = -26141.138342 eV Core-core repulsion = 22477.902130 eV Total energy + Delta-G solvation = -3663.236212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.34163 -38.56696 -38.12846 -37.78929 -36.78765 -34.40731 -34.08572 -31.84931 -29.84715 -29.33286 -27.49826 -27.05542 -23.68505 -23.04366 -22.96222 -21.51729 -21.14437 -20.14866 -18.45981 -18.36406 -17.63387 -17.41555 -16.79781 -16.71142 -16.36790 -16.05326 -15.91341 -15.55572 -15.05740 -14.91286 -14.59496 -14.19259 -13.78652 -13.71150 -13.58303 -13.46294 -13.19437 -13.07328 -12.93265 -12.89623 -12.86811 -12.52576 -12.43526 -12.35192 -12.20402 -12.09117 -11.99494 -11.87474 -11.58255 -11.47271 -11.33718 -10.88062 -10.56959 -10.53015 -10.25039 -9.86855 -8.19951 -6.34357 -0.49957 1.37179 1.40185 1.48153 2.02277 2.38932 2.86230 2.94332 3.07609 3.38769 3.45954 3.66422 3.75572 3.92904 4.08330 4.12607 4.20173 4.27335 4.33275 4.39638 4.49117 4.53200 4.54975 4.57558 4.60164 4.61296 4.80599 4.85999 4.86235 4.96775 4.98522 5.07861 5.10530 5.18513 5.22200 5.23332 5.35831 5.46800 5.49796 5.59653 5.71260 6.22104 6.24335 6.35576 6.71465 7.37965 8.86822 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.004445 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.477013 B = 6297.882848 C = 7016.728944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.090 3.910 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.138 3.862 7 N -1.107 6.107 8 S 2.620 3.380 9 O -0.997 6.997 10 O -0.996 6.996 11 C -0.550 4.550 12 C 0.010 3.990 13 C -0.536 4.536 14 H 0.047 0.953 15 C 0.045 3.955 16 N -0.890 5.890 17 Si 0.932 3.068 18 H -0.278 1.278 19 H -0.273 1.273 20 H -0.269 1.269 21 C -0.196 4.196 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.139 4.139 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.425 0.575 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.265 0.735 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 -1.885 13.670 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.033 3.967 4 C -0.153 4.153 5 C -0.150 4.150 6 C 0.031 3.969 7 N -0.867 5.867 8 S 2.717 3.283 9 O -0.986 6.986 10 O -0.986 6.986 11 C -0.682 4.682 12 C 0.008 3.992 13 C -0.573 4.573 14 H 0.065 0.935 15 C -0.158 4.158 16 N -0.526 5.526 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.197 1.197 20 H -0.194 1.194 21 C -0.234 4.234 22 C -0.176 4.176 23 C -0.179 4.179 24 C -0.178 4.178 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.261 0.739 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.525 -2.077 13.540 18.562 hybrid contribution 0.155 -0.373 -0.924 1.008 sum -12.370 -2.450 12.616 17.838 Atomic orbital electron populations 1.22954 0.79879 1.03565 1.00801 1.87890 1.21174 1.28694 1.95158 1.22237 0.95202 0.84411 0.94889 1.21562 0.95168 0.96814 1.01720 1.21721 1.02471 0.96716 0.94056 1.21009 0.94467 0.82223 0.99165 1.55471 1.64220 1.22402 1.44618 1.04406 0.75040 0.72697 0.76126 1.93482 1.59878 1.58463 1.86825 1.93461 1.82387 1.39236 1.83509 1.29946 1.11611 1.10392 1.16292 1.18409 0.96045 0.89792 0.94940 1.20702 0.93360 1.15066 1.28168 0.93499 1.25481 0.98217 0.97134 0.95011 1.70015 1.22883 1.24144 1.35575 0.85947 0.81059 0.79216 0.78052 1.20374 1.19748 1.19357 1.23242 1.01786 0.94693 1.03635 1.22501 0.96780 1.03813 0.94511 1.22140 0.96369 0.97845 1.01522 1.21979 1.01571 0.96274 0.97941 0.88961 0.92639 0.93650 0.89821 0.92371 0.89317 0.90537 0.88411 0.91444 0.73878 0.85882 0.84655 0.92570 0.88204 0.90092 0.91642 0.89278 0.88399 0.91721 0.92794 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.41 -8.61 10.35 -148.98 -1.54 -10.15 16 3 C 0.09 1.66 2.61 30.60 0.08 1.74 16 4 C -0.11 -2.14 5.57 30.60 0.17 -1.97 16 5 C -0.11 -2.06 5.45 30.59 0.17 -1.89 16 6 C 0.14 3.50 2.69 44.99 0.12 3.62 16 7 N -1.11 -30.19 5.36 -169.40 -0.91 -31.10 16 8 S 2.62 104.12 5.16 -56.49 -0.29 103.83 16 9 O -1.00 -48.69 17.12 -127.65 -2.19 -50.87 16 10 O -1.00 -42.73 18.08 -127.65 -2.31 -45.04 16 11 C -0.55 -22.21 4.82 71.98 0.35 -21.86 16 12 C 0.01 0.49 1.33 -52.93 -0.07 0.42 16 13 C -0.54 -29.82 8.23 25.60 0.21 -29.61 16 14 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 15 C 0.04 2.46 5.38 84.65 0.46 2.91 16 16 N -0.89 -48.99 12.96 21.45 0.28 -48.71 16 17 Si 0.93 44.36 29.55 68.60 2.03 46.38 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.20 -8.39 9.96 30.62 0.30 -8.08 16 22 C -0.14 -6.08 9.47 30.62 0.29 -5.79 16 23 C -0.14 -3.05 5.49 30.59 0.17 -2.88 16 24 C -0.14 -2.99 5.54 30.59 0.17 -2.82 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 0.60 8.08 -2.39 -0.02 0.58 16 27 H 0.04 0.60 7.87 -2.39 -0.02 0.58 16 28 H 0.08 1.17 7.79 -2.39 -0.02 1.15 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 2.12 7.48 -2.39 -0.02 2.10 16 34 H 0.42 8.85 8.80 -96.74 -0.85 8.00 16 35 H 0.12 5.27 7.26 -2.39 -0.02 5.26 16 36 H 0.14 4.34 8.09 -2.39 -0.02 4.32 16 37 H 0.27 13.90 8.32 -92.71 -0.77 13.13 16 38 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 39 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.63 6.02 -2.39 -0.01 1.61 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 45 H 0.08 1.48 7.87 -2.39 -0.02 1.46 16 Total: -1.00 -71.23 372.21 -1.17 -72.40 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.12 Total: 27.89 kcal Atomic # 6 Polarization: -68.28 SS G_CDS: 3.64 Total: -64.64 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -0.63 Total: -79.81 kcal Atomic # 8 Polarization: -100.03 SS G_CDS: -6.03 Total: -106.06 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 104.12 SS G_CDS: -0.29 Total: 103.83 kcal Total: -71.23 -1.17 -72.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365417089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.287 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds